Wall clock time and date at job start Tue Mar 31 2020 03:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35535 * 125.67520 * 2 1 4 4 C 1.35452 * 108.86581 * 180.26522 * 3 2 1 5 5 C 1.39833 * 107.86763 * 359.76556 * 4 3 2 6 6 C 1.37644 * 125.67603 * 179.86655 * 2 1 3 7 7 C 1.46679 * 126.23465 * 0.02562 * 6 2 1 8 8 O 1.21690 * 120.00039 * 354.33629 * 7 6 2 9 9 N 1.34781 * 120.00191 * 174.34189 * 7 6 2 10 10 C 1.46497 * 120.00328 * 184.72760 * 9 7 6 11 11 H 1.09003 * 109.45868 * 324.97014 * 10 9 7 12 12 C 1.53036 * 109.46185 * 84.92779 * 10 9 7 13 13 C 1.52761 * 109.38442 * 181.26077 * 12 10 9 14 14 N 1.46926 * 109.01090 * 305.59175 * 13 12 10 15 15 C 1.36930 * 120.63108 * 233.58455 * 14 13 12 16 16 H 1.07998 * 120.00022 * 148.36550 * 15 14 13 17 17 C 1.38816 * 119.99832 * 328.09196 * 15 14 13 18 18 N 1.31618 * 119.99908 * 349.88470 * 17 15 14 19 19 Si 1.86799 * 119.99923 * 169.88650 * 17 15 14 20 20 H 1.48500 * 109.47154 * 89.99738 * 19 17 15 21 21 H 1.48497 * 109.47046 * 209.99902 * 19 17 15 22 22 H 1.48499 * 109.47183 * 329.99815 * 19 17 15 23 23 C 1.46929 * 118.73733 * 53.30661 * 14 13 12 24 24 C 1.53041 * 109.45952 * 205.00169 * 10 9 7 25 25 H 1.08997 * 109.52905 * 58.64653 * 24 10 9 26 26 O 1.42903 * 109.49329 * 298.55888 * 24 10 9 27 27 H 1.08998 * 109.46949 * 273.88186 * 1 2 3 28 28 H 1.08995 * 109.46996 * 33.87933 * 1 2 3 29 29 H 1.08997 * 109.47110 * 153.88199 * 1 2 3 30 30 H 1.07991 * 125.57101 * 359.97438 * 3 2 1 31 31 H 1.08004 * 126.06712 * 179.74523 * 4 3 2 32 32 H 1.07999 * 126.45913 * 179.97438 * 5 4 3 33 33 H 0.97008 * 119.99595 * 4.72447 * 9 7 6 34 34 H 1.08999 * 109.49944 * 301.34052 * 12 10 9 35 35 H 1.09003 * 109.49751 * 61.43451 * 12 10 9 36 36 H 1.08998 * 109.50936 * 185.70385 * 13 12 10 37 37 H 1.09004 * 109.42716 * 65.42788 * 13 12 10 38 38 H 0.97003 * 119.99686 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.58556 * 66.43473 * 23 14 13 40 40 H 1.09002 * 109.58538 * 186.86193 * 23 14 13 41 41 H 0.96701 * 113.99399 * 180.16529 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7093 -0.0059 5 6 3.5780 -0.6888 -0.0044 6 6 2.2678 -1.1181 0.0026 7 6 1.8124 -2.5124 0.0053 8 8 0.6265 -2.7649 0.1094 9 7 2.7073 -3.5139 -0.1074 10 6 2.2459 -4.9006 -0.2089 11 1 1.3520 -5.0315 0.4010 12 6 1.9185 -5.2234 -1.6686 13 6 1.4078 -6.6597 -1.7680 14 7 2.3935 -7.5615 -1.1566 15 6 2.8850 -8.6331 -1.8531 16 1 3.8941 -8.9751 -1.6766 17 6 2.0843 -9.2835 -2.7820 18 7 0.7999 -9.0047 -2.8535 19 14 2.8295 -10.5545 -3.9303 20 1 2.7567 -11.8961 -3.2979 21 1 2.0753 -10.5685 -5.2094 22 1 4.2490 -10.2091 -4.1965 23 6 2.8465 -7.2881 0.2141 24 6 3.3453 -5.8415 0.2893 25 1 3.5949 -5.5960 1.3215 26 8 4.5066 -5.6942 -0.5304 27 1 -0.3633 0.0696 1.0253 28 1 -0.3633 0.8531 -0.5728 29 1 -0.3633 -0.9227 -0.4524 30 1 1.9083 2.1236 -0.0004 31 1 4.4133 1.3611 -0.0113 32 1 4.4583 -1.3144 -0.0083 33 1 3.6570 -3.3165 -0.1212 34 1 1.1520 -4.5377 -2.0298 35 1 2.8177 -5.1169 -2.2753 36 1 1.2701 -6.9254 -2.8161 37 1 0.4581 -6.7442 -1.2396 38 1 0.2404 -9.4595 -3.5023 39 1 2.0166 -7.4250 0.9073 40 1 3.6579 -7.9682 0.4733 41 1 5.2444 -6.2639 -0.2730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090088413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:28 Heat of formation + Delta-G solvation = -34.215954 kcal Electronic energy + Delta-G solvation = -24047.956197 eV Core-core repulsion = 20542.464700 eV Total energy + Delta-G solvation = -3505.491498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -42.31126 -40.71341 -39.21627 -36.58549 -35.78545 -33.98978 -33.46847 -31.91623 -30.72372 -29.71939 -27.37503 -26.95443 -24.44855 -23.83145 -22.89385 -21.40997 -21.18947 -20.37797 -19.11669 -18.67911 -17.53105 -17.26716 -16.83841 -16.57309 -16.46113 -15.82803 -15.53454 -15.36162 -15.30048 -14.93446 -14.51375 -14.38221 -14.11428 -13.77213 -13.64285 -13.24848 -13.18037 -12.96215 -12.90022 -12.76583 -12.69620 -12.43625 -12.10639 -12.06410 -11.89143 -11.45171 -11.03379 -10.85134 -10.53107 -10.08819 -9.67509 -9.15916 -8.61065 -7.85351 -5.36601 0.49016 1.47585 1.49309 1.58536 1.68206 1.85704 2.35913 2.42648 2.51342 3.31405 3.38409 3.62159 3.79009 3.87367 3.98946 4.04642 4.20960 4.26840 4.36953 4.37137 4.49545 4.56362 4.70046 4.72309 4.77894 4.86850 4.94317 5.00440 5.12086 5.19028 5.28939 5.44497 5.49000 5.64393 5.69415 5.84246 6.01423 6.34861 6.40881 6.56988 6.99394 7.15716 7.19090 7.83448 8.37762 9.21204 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.003617 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.879653 B = 7740.133534 C = 8087.475796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.422 5.422 3 C 0.023 3.977 4 C -0.220 4.220 5 C -0.137 4.137 6 C -0.091 4.091 7 C 0.579 3.421 8 O -0.591 6.591 9 N -0.695 5.695 10 C 0.170 3.830 11 H 0.075 0.925 12 C -0.125 4.125 13 C 0.186 3.814 14 N -0.598 5.598 15 C -0.255 4.255 16 H 0.073 0.927 17 C -0.054 4.054 18 N -0.940 5.940 19 Si 0.971 3.029 20 H -0.283 1.283 21 H -0.298 1.298 22 H -0.267 1.267 23 C 0.112 3.888 24 C 0.100 3.900 25 H 0.086 0.914 26 O -0.563 6.563 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.206 0.794 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.415 0.585 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.054 0.946 37 H -0.009 1.009 38 H 0.248 0.752 39 H 0.023 0.977 40 H 0.078 0.922 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.864 19.786 8.081 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.095 5.095 3 C -0.113 4.113 4 C -0.243 4.243 5 C -0.163 4.163 6 C -0.203 4.203 7 C 0.369 3.631 8 O -0.474 6.474 9 N -0.345 5.345 10 C 0.066 3.934 11 H 0.093 0.907 12 C -0.165 4.165 13 C 0.059 3.941 14 N -0.321 5.321 15 C -0.385 4.385 16 H 0.091 0.909 17 C -0.249 4.249 18 N -0.587 5.587 19 Si 0.799 3.201 20 H -0.210 1.210 21 H -0.224 1.224 22 H -0.192 1.192 23 C -0.015 4.015 24 C 0.039 3.961 25 H 0.103 0.897 26 O -0.370 6.370 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.093 0.907 30 H 0.222 0.778 31 H 0.185 0.815 32 H 0.175 0.825 33 H 0.252 0.748 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.010 0.990 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.097 0.903 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.154 19.903 7.744 21.969 hybrid contribution 0.339 -1.368 -0.543 1.511 sum 5.493 18.535 7.200 20.629 Atomic orbital electron populations 1.22338 0.75559 1.05367 1.04427 1.44122 1.07502 1.05134 1.52740 1.22728 0.90545 0.92404 1.05588 1.21209 0.97168 0.94534 1.11383 1.21704 0.94085 0.96724 1.03830 1.20025 0.91768 0.87060 1.21464 1.17454 0.85298 0.84722 0.75602 1.90749 1.17923 1.85530 1.53202 1.45600 1.10348 1.05286 1.73299 1.20741 0.96522 0.79617 0.96550 0.90718 1.22146 1.00053 0.97754 0.96586 1.20352 0.89359 0.86332 0.98020 1.44039 1.49054 1.28250 1.10777 1.19517 0.95538 1.05577 1.17899 0.90933 1.25978 0.95271 1.00462 1.03216 1.70162 1.05067 1.45613 1.37820 0.85220 0.77989 0.79039 0.77843 1.21000 1.22426 1.19170 1.21811 0.98239 0.94992 0.86435 1.22354 0.85685 0.94451 0.93642 0.89685 1.86416 1.24469 1.66749 1.59410 0.89944 0.86828 0.90702 0.77754 0.81468 0.82478 0.74788 0.94175 0.92236 0.92737 0.99047 0.94267 0.95890 0.90338 0.75980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 10.63 127.77 1.36 2.61 16 2 N -0.42 -9.64 3.16 -534.32 -1.69 -11.33 16 3 C 0.02 0.38 11.38 83.48 0.95 1.33 16 4 C -0.22 -3.82 10.81 22.01 0.24 -3.58 16 5 C -0.14 -2.98 10.35 22.57 0.23 -2.75 16 6 C -0.09 -2.48 6.88 40.35 0.28 -2.20 16 7 C 0.58 19.29 7.73 86.45 0.67 19.95 16 8 O -0.59 -23.61 14.29 -4.32 -0.06 -23.67 16 9 N -0.70 -21.36 5.04 -446.38 -2.25 -23.60 16 10 C 0.17 6.17 2.24 45.02 0.10 6.27 16 11 H 0.07 3.00 7.51 -2.39 -0.02 2.98 16 12 C -0.13 -5.40 5.50 30.53 0.17 -5.23 16 13 C 0.19 9.61 5.22 86.22 0.45 10.06 16 14 N -0.60 -29.95 2.93 -699.91 -2.05 -32.00 16 15 C -0.26 -13.84 9.58 84.04 0.80 -13.03 16 16 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 17 C -0.05 -3.06 5.06 84.86 0.43 -2.63 16 18 N -0.94 -56.96 11.06 21.65 0.24 -56.72 16 19 Si 0.97 45.12 29.57 68.60 2.03 47.15 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 C 0.11 4.35 6.16 86.36 0.53 4.88 16 24 C 0.10 3.14 3.38 30.67 0.10 3.25 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 O -0.56 -16.87 12.09 -148.98 -1.80 -18.67 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.97 6.24 -2.39 -0.01 1.96 16 30 H 0.21 1.62 8.06 -2.92 -0.02 1.60 16 31 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.16 2.80 7.45 -2.91 -0.02 2.78 16 33 H 0.41 10.68 7.16 -92.70 -0.66 10.02 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 2.64 7.61 -2.39 -0.02 2.62 16 36 H 0.05 3.19 6.13 -2.39 -0.01 3.18 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 41 H 0.39 8.68 9.08 -74.06 -0.67 8.01 16 Total: -1.00 -74.54 334.62 0.45 -74.08 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -0.28 Total: 25.83 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 6.31 Total: 18.92 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -5.75 Total: -123.65 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.86 Total: -42.33 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.54 0.45 -74.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090088413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.869 kcal (2) G-P(sol) polarization free energy of solvation -74.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds