Wall clock time and date at job start Tue Mar 31 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35536 * 125.67549 * 2 1 4 4 C 1.35453 * 108.87161 * 180.02562 * 3 2 1 5 5 C 1.39837 * 107.86229 * 0.02562 * 4 3 2 6 6 C 1.37646 * 125.67979 * 180.02562 * 2 1 3 7 7 C 1.46680 * 126.23372 * 359.72088 * 6 2 1 8 8 O 1.21695 * 120.00032 * 354.80495 * 7 6 2 9 9 N 1.34770 * 120.00184 * 174.81022 * 7 6 2 10 10 C 1.46504 * 120.00201 * 184.87670 * 9 7 6 11 11 H 1.08998 * 109.45978 * 325.00486 * 10 9 7 12 12 C 1.53048 * 109.45684 * 84.97396 * 10 9 7 13 13 C 1.53190 * 109.30955 * 181.38456 * 12 10 9 14 14 N 1.46922 * 108.77907 * 305.36364 * 13 12 10 15 15 C 1.36932 * 120.63276 * 233.63231 * 14 13 12 16 16 H 1.07997 * 120.00355 * 152.55950 * 15 14 13 17 17 C 1.38823 * 120.00046 * 332.55380 * 15 14 13 18 18 N 1.31613 * 120.00017 * 160.40134 * 17 15 14 19 19 Si 1.86798 * 119.99729 * 340.40015 * 17 15 14 20 20 H 1.48503 * 109.46925 * 95.07512 * 19 17 15 21 21 H 1.48492 * 109.46942 * 215.07425 * 19 17 15 22 22 H 1.48502 * 109.47363 * 335.07822 * 19 17 15 23 23 C 1.46926 * 118.73738 * 53.61082 * 14 13 12 24 24 C 1.53038 * 109.46123 * 205.02740 * 10 9 7 25 25 H 1.09001 * 109.49677 * 298.56725 * 24 10 9 26 26 O 1.42901 * 109.49731 * 58.66564 * 24 10 9 27 27 H 1.09005 * 109.47097 * 273.19808 * 1 2 3 28 28 H 1.08995 * 109.47405 * 33.20206 * 1 2 3 29 29 H 1.09007 * 109.47238 * 153.20569 * 1 2 3 30 30 H 1.07995 * 125.56538 * 0.02562 * 3 2 1 31 31 H 1.07994 * 126.06865 * 179.97438 * 4 3 2 32 32 H 1.08002 * 126.45426 * 180.02562 * 5 4 3 33 33 H 0.97008 * 120.00224 * 4.88219 * 9 7 6 34 34 H 1.09003 * 109.49533 * 301.34065 * 12 10 9 35 35 H 1.09004 * 109.49271 * 61.43506 * 12 10 9 36 36 H 1.09003 * 109.58291 * 65.15704 * 13 12 10 37 37 H 1.09007 * 109.58357 * 185.57377 * 13 12 10 38 38 H 0.96995 * 120.00198 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.58894 * 66.17584 * 23 14 13 40 40 H 1.08996 * 109.58762 * 186.46169 * 23 14 13 41 41 H 0.96705 * 113.99811 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0006 5 6 3.5779 -0.6887 -0.0015 6 6 2.2678 -1.1181 -0.0005 7 6 1.8124 -2.5124 0.0046 8 8 0.6262 -2.7647 0.1054 9 7 2.7077 -3.5141 -0.1021 10 6 2.2466 -4.9009 -0.2046 11 1 1.3491 -5.0308 0.4002 12 6 1.9281 -5.2256 -1.6659 13 6 1.4136 -6.6651 -1.7644 14 7 2.3996 -7.5630 -1.1479 15 6 2.8950 -8.6357 -1.8400 16 1 3.8793 -9.0173 -1.6123 17 6 2.1321 -9.2327 -2.8343 18 7 2.7115 -9.9833 -3.7470 19 14 0.2831 -8.9707 -2.8767 20 1 -0.0372 -7.8513 -3.7984 21 1 -0.3816 -10.2101 -3.3534 22 1 -0.2019 -8.6424 -1.5120 23 6 2.8442 -7.2879 0.2251 24 6 3.3429 -5.8414 0.3012 25 1 4.2324 -5.7300 -0.3189 26 8 3.6615 -5.5176 1.6561 27 1 -0.3633 0.0573 1.0261 28 1 -0.3634 0.8598 -0.5627 29 1 -0.3634 -0.9174 -0.4633 30 1 1.9081 2.1236 0.0004 31 1 4.4131 1.3613 -0.0011 32 1 4.4583 -1.3143 -0.0018 33 1 3.6575 -3.3169 -0.1110 34 1 1.1640 -4.5401 -2.0326 35 1 2.8312 -5.1200 -2.2671 36 1 0.4627 -6.7500 -1.2384 37 1 1.2791 -6.9341 -2.8122 38 1 2.1785 -10.4002 -4.4419 39 1 2.0100 -7.4237 0.9135 40 1 3.6520 -7.9696 0.4911 41 1 4.3505 -6.0755 2.0422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090088416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:31 Heat of formation + Delta-G solvation = -5.240221 kcal Electronic energy + Delta-G solvation = -24037.869031 eV Core-core repulsion = 20533.634016 eV Total energy + Delta-G solvation = -3504.235016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45162 -39.51854 -37.93150 -35.65662 -34.57368 -32.98210 -32.06904 -30.61968 -29.50140 -28.72535 -26.62072 -25.21841 -22.91670 -22.75356 -21.59041 -20.59106 -20.08960 -19.33740 -17.95340 -17.15456 -16.63883 -16.12365 -15.84339 -15.64269 -14.96246 -14.55185 -14.38472 -14.13716 -13.95005 -13.53659 -13.37021 -13.23359 -12.84466 -12.54957 -12.50955 -12.43287 -12.22965 -12.15046 -11.99895 -11.57157 -11.21694 -11.03056 -10.20582 -10.17840 -10.02533 -9.88621 -9.72945 -9.53403 -8.89480 -8.87057 -8.69758 -8.31130 -7.08830 -6.01288 -3.40047 1.43387 2.55477 2.62623 3.30143 3.40620 3.43876 3.46907 3.49641 4.27923 4.47855 4.67437 4.78267 4.83634 4.89551 5.07350 5.13721 5.25872 5.28383 5.32672 5.39820 5.48858 5.54954 5.74433 5.78024 5.91709 5.99107 6.05884 6.21745 6.26921 6.37454 6.50481 6.54354 6.58548 6.71006 6.79156 6.85376 7.06651 7.63464 7.77094 7.90623 8.24678 8.30579 8.83801 9.63439 9.98577 11.14103 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024325 B = 0.004010 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.804236 B = 6981.687407 C = 7503.853428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.412 5.412 3 C 0.008 3.992 4 C -0.208 4.208 5 C -0.143 4.143 6 C -0.046 4.046 7 C 0.587 3.413 8 O -0.554 6.554 9 N -0.702 5.702 10 C 0.164 3.836 11 H 0.091 0.909 12 C -0.141 4.141 13 C 0.127 3.873 14 N -0.602 5.602 15 C -0.266 4.266 16 H 0.087 0.913 17 C 0.027 3.973 18 N -0.906 5.906 19 Si 0.882 3.118 20 H -0.288 1.288 21 H -0.302 1.302 22 H -0.268 1.268 23 C 0.124 3.876 24 C 0.080 3.920 25 H 0.062 0.938 26 O -0.569 6.569 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.167 0.833 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.401 0.599 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.264 0.736 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 20.195 8.179 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.084 5.084 3 C -0.127 4.127 4 C -0.232 4.232 5 C -0.169 4.169 6 C -0.160 4.160 7 C 0.375 3.625 8 O -0.434 6.434 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.109 0.891 12 C -0.181 4.181 13 C 0.001 3.999 14 N -0.327 5.327 15 C -0.394 4.394 16 H 0.105 0.895 17 C -0.173 4.173 18 N -0.549 5.549 19 Si 0.712 3.288 20 H -0.215 1.215 21 H -0.230 1.230 22 H -0.192 1.192 23 C -0.003 4.003 24 C 0.019 3.981 25 H 0.080 0.920 26 O -0.373 6.373 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.184 0.816 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.235 0.765 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.818 20.284 8.003 21.821 hybrid contribution -0.137 -0.142 -0.106 0.224 sum -0.955 20.142 7.897 21.656 Atomic orbital electron populations 1.22283 0.76157 1.05409 1.03739 1.43862 1.06834 1.05011 1.52725 1.21991 0.90770 0.91460 1.08520 1.20807 0.95954 0.95025 1.11449 1.21357 0.94502 0.95476 1.05612 1.20175 0.90473 0.87741 1.17575 1.16974 0.85757 0.83458 0.76318 1.90766 1.16423 1.84849 1.51359 1.45683 1.09591 1.06187 1.73628 1.20975 0.97683 0.78182 0.97150 0.89083 1.22452 1.01982 0.99066 0.94646 1.21388 0.91999 0.87903 0.98641 1.44311 1.49398 1.28882 1.10095 1.18898 0.99422 1.06247 1.14852 0.89505 1.25265 0.97829 0.96992 0.97191 1.69811 1.35320 1.35372 1.14366 0.86970 0.87604 0.75950 0.78295 1.21532 1.22997 1.19247 1.21556 0.98655 0.92610 0.87479 1.22726 0.96883 0.96171 0.82355 0.91972 1.86490 1.61583 1.61611 1.27646 0.90638 0.90150 0.87674 0.81588 0.84083 0.83898 0.76470 0.91588 0.91135 0.94996 0.90449 0.92626 0.94790 0.91088 0.77684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.61 59.85 0.64 1.27 16 2 N -0.41 -4.87 3.16 -120.24 -0.38 -5.25 16 3 C 0.01 0.07 11.38 -16.91 -0.19 -0.12 16 4 C -0.21 -2.09 10.81 -39.98 -0.43 -2.52 16 5 C -0.14 -1.65 10.35 -39.12 -0.41 -2.06 16 6 C -0.05 -0.63 6.88 -81.98 -0.56 -1.19 16 7 C 0.59 9.33 7.73 -12.86 -0.10 9.23 16 8 O -0.55 -10.29 14.30 5.19 0.07 -10.21 16 9 N -0.70 -10.36 4.90 -55.07 -0.27 -10.63 16 10 C 0.16 2.78 2.16 -67.88 -0.15 2.64 16 11 H 0.09 1.75 7.51 -51.93 -0.39 1.36 16 12 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16 13 C 0.13 2.77 4.18 -3.71 -0.02 2.75 16 14 N -0.60 -13.87 2.77 -172.32 -0.48 -14.35 16 15 C -0.27 -7.22 10.05 -15.06 -0.15 -7.37 16 16 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 17 C 0.03 0.76 5.25 -17.43 -0.09 0.67 16 18 N -0.91 -27.31 13.97 55.49 0.78 -26.54 16 19 Si 0.88 22.23 24.34 -169.99 -4.14 18.10 16 20 H -0.29 -7.05 6.72 56.52 0.38 -6.67 16 21 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.27 -6.65 6.39 56.52 0.36 -6.29 16 23 C 0.12 2.34 6.14 -3.71 -0.02 2.32 16 24 C 0.08 1.27 3.14 -26.61 -0.08 1.18 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 O -0.57 -7.97 13.16 -35.23 -0.46 -8.43 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.10 1.26 6.27 -51.92 -0.33 0.94 16 30 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.14 1.36 7.45 -52.49 -0.39 0.97 16 33 H 0.40 4.99 7.50 -40.82 -0.31 4.68 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.03 0.71 6.94 -51.93 -0.36 0.35 16 37 H 0.08 1.84 4.49 -51.93 -0.23 1.60 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 41 H 0.38 3.68 9.08 45.56 0.41 4.10 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -33.79 329.69 -6.64 -40.43 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.01 Total: 7.86 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.72 Total: 4.06 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.35 Total: -56.77 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.39 Total: -18.65 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.79 -6.64 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090088416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.190 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds