Wall clock time and date at job start Tue Mar 31 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35536 * 125.67549 * 2 1 4 4 C 1.35453 * 108.87161 * 180.02562 * 3 2 1 5 5 C 1.39837 * 107.86229 * 0.02562 * 4 3 2 6 6 C 1.37646 * 125.67979 * 180.02562 * 2 1 3 7 7 C 1.46680 * 126.23372 * 359.72088 * 6 2 1 8 8 O 1.21695 * 120.00032 * 354.80495 * 7 6 2 9 9 N 1.34770 * 120.00184 * 174.81022 * 7 6 2 10 10 C 1.46504 * 120.00201 * 184.87670 * 9 7 6 11 11 H 1.08998 * 109.45978 * 325.00486 * 10 9 7 12 12 C 1.53048 * 109.45684 * 84.97396 * 10 9 7 13 13 C 1.53190 * 109.30955 * 181.38456 * 12 10 9 14 14 N 1.46922 * 108.77907 * 305.36364 * 13 12 10 15 15 C 1.36932 * 120.63276 * 233.63231 * 14 13 12 16 16 H 1.07997 * 120.00355 * 152.55950 * 15 14 13 17 17 C 1.38823 * 120.00046 * 332.55380 * 15 14 13 18 18 N 1.31613 * 120.00017 * 160.40134 * 17 15 14 19 19 Si 1.86798 * 119.99729 * 340.40015 * 17 15 14 20 20 H 1.48503 * 109.46925 * 95.07512 * 19 17 15 21 21 H 1.48492 * 109.46942 * 215.07425 * 19 17 15 22 22 H 1.48502 * 109.47363 * 335.07822 * 19 17 15 23 23 C 1.46926 * 118.73738 * 53.61082 * 14 13 12 24 24 C 1.53038 * 109.46123 * 205.02740 * 10 9 7 25 25 H 1.09001 * 109.49677 * 298.56725 * 24 10 9 26 26 O 1.42901 * 109.49731 * 58.66564 * 24 10 9 27 27 H 1.09005 * 109.47097 * 273.19808 * 1 2 3 28 28 H 1.08995 * 109.47405 * 33.20206 * 1 2 3 29 29 H 1.09007 * 109.47238 * 153.20569 * 1 2 3 30 30 H 1.07995 * 125.56538 * 0.02562 * 3 2 1 31 31 H 1.07994 * 126.06865 * 179.97438 * 4 3 2 32 32 H 1.08002 * 126.45426 * 180.02562 * 5 4 3 33 33 H 0.97008 * 120.00224 * 4.88219 * 9 7 6 34 34 H 1.09003 * 109.49533 * 301.34065 * 12 10 9 35 35 H 1.09004 * 109.49271 * 61.43506 * 12 10 9 36 36 H 1.09003 * 109.58291 * 65.15704 * 13 12 10 37 37 H 1.09007 * 109.58357 * 185.57377 * 13 12 10 38 38 H 0.96995 * 120.00198 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.58894 * 66.17584 * 23 14 13 40 40 H 1.08996 * 109.58762 * 186.46169 * 23 14 13 41 41 H 0.96705 * 113.99811 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0006 5 6 3.5779 -0.6887 -0.0015 6 6 2.2678 -1.1181 -0.0005 7 6 1.8124 -2.5124 0.0046 8 8 0.6262 -2.7647 0.1054 9 7 2.7077 -3.5141 -0.1021 10 6 2.2466 -4.9009 -0.2046 11 1 1.3491 -5.0308 0.4002 12 6 1.9281 -5.2256 -1.6659 13 6 1.4136 -6.6651 -1.7644 14 7 2.3996 -7.5630 -1.1479 15 6 2.8950 -8.6357 -1.8400 16 1 3.8793 -9.0173 -1.6123 17 6 2.1321 -9.2327 -2.8343 18 7 2.7115 -9.9833 -3.7470 19 14 0.2831 -8.9707 -2.8767 20 1 -0.0372 -7.8513 -3.7984 21 1 -0.3816 -10.2101 -3.3534 22 1 -0.2019 -8.6424 -1.5120 23 6 2.8442 -7.2879 0.2251 24 6 3.3429 -5.8414 0.3012 25 1 4.2324 -5.7300 -0.3189 26 8 3.6615 -5.5176 1.6561 27 1 -0.3633 0.0573 1.0261 28 1 -0.3634 0.8598 -0.5627 29 1 -0.3634 -0.9174 -0.4633 30 1 1.9081 2.1236 0.0004 31 1 4.4131 1.3613 -0.0011 32 1 4.4583 -1.3143 -0.0018 33 1 3.6575 -3.3169 -0.1110 34 1 1.1640 -4.5401 -2.0326 35 1 2.8312 -5.1200 -2.2671 36 1 0.4627 -6.7500 -1.2384 37 1 1.2791 -6.9341 -2.8122 38 1 2.1785 -10.4002 -4.4419 39 1 2.0100 -7.4237 0.9135 40 1 3.6520 -7.9696 0.4911 41 1 4.3505 -6.0755 2.0422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090088416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:31 Heat of formation + Delta-G solvation = -31.726166 kcal Electronic energy + Delta-G solvation = -24039.017548 eV Core-core repulsion = 20533.634016 eV Total energy + Delta-G solvation = -3505.383532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.32194 -40.80071 -39.29485 -37.13783 -35.90116 -34.18609 -33.62827 -32.15828 -30.90504 -29.90129 -27.38101 -26.92782 -24.38713 -24.24885 -22.98312 -21.60627 -21.34705 -20.45711 -19.11199 -18.67590 -18.06857 -17.64678 -17.01701 -16.62341 -16.48232 -16.21526 -15.67482 -15.32849 -15.25657 -14.95672 -14.59052 -14.37140 -14.12156 -14.04900 -13.92378 -13.69659 -13.24918 -13.21095 -13.17701 -12.97643 -12.89173 -12.68296 -12.15348 -11.90723 -11.65091 -11.47279 -11.18059 -11.08674 -10.70180 -10.17827 -9.68048 -9.16809 -9.02921 -8.19796 -5.54018 0.48182 1.27712 1.39611 1.47166 1.66730 1.84422 2.36050 2.37436 2.37996 2.90536 3.10859 3.33200 3.69420 3.84121 3.97974 3.98431 4.07414 4.20060 4.21516 4.29530 4.36069 4.48401 4.51741 4.56676 4.66546 4.72978 4.76308 4.82326 4.87503 5.01121 5.18136 5.21725 5.28521 5.39431 5.80613 5.82868 6.01051 6.09330 6.33756 6.52231 6.78407 6.91308 7.16040 7.54776 7.94765 8.99272 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024325 B = 0.004010 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.804236 B = 6981.687407 C = 7503.853428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.422 5.422 3 C 0.023 3.977 4 C -0.220 4.220 5 C -0.136 4.136 6 C -0.090 4.090 7 C 0.583 3.417 8 O -0.591 6.591 9 N -0.693 5.693 10 C 0.171 3.829 11 H 0.068 0.932 12 C -0.128 4.128 13 C 0.124 3.876 14 N -0.613 5.613 15 C -0.249 4.249 16 H 0.066 0.934 17 C -0.027 4.027 18 N -0.951 5.951 19 Si 0.935 3.065 20 H -0.279 1.279 21 H -0.309 1.309 22 H -0.264 1.264 23 C 0.120 3.880 24 C 0.100 3.900 25 H 0.072 0.928 26 O -0.569 6.569 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.205 0.795 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.413 0.587 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.057 0.943 38 H 0.263 0.737 39 H 0.033 0.967 40 H 0.080 0.920 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.482 23.255 9.295 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.095 5.095 3 C -0.113 4.113 4 C -0.243 4.243 5 C -0.163 4.163 6 C -0.203 4.203 7 C 0.373 3.627 8 O -0.473 6.473 9 N -0.343 5.343 10 C 0.065 3.935 11 H 0.086 0.914 12 C -0.169 4.169 13 C -0.002 4.002 14 N -0.339 5.339 15 C -0.378 4.378 16 H 0.083 0.917 17 C -0.222 4.222 18 N -0.597 5.597 19 Si 0.765 3.235 20 H -0.206 1.206 21 H -0.237 1.237 22 H -0.188 1.188 23 C -0.006 4.006 24 C 0.039 3.961 25 H 0.090 0.910 26 O -0.376 6.376 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.222 0.778 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.250 0.750 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.212 23.374 9.166 25.108 hybrid contribution -0.228 -0.978 -0.348 1.063 sum -0.440 22.396 8.818 24.073 Atomic orbital electron populations 1.22334 0.75544 1.05442 1.04326 1.44115 1.07503 1.05127 1.52760 1.22722 0.90565 0.92410 1.05594 1.21209 0.97152 0.94607 1.11375 1.21707 0.94129 0.96686 1.03804 1.20016 0.91736 0.87077 1.21448 1.17378 0.85279 0.84624 0.75434 1.90742 1.17911 1.85530 1.53163 1.45462 1.10216 1.05084 1.73494 1.20682 0.97354 0.79806 0.95617 0.91382 1.22256 1.01992 0.96604 0.95999 1.21347 0.91878 0.89706 0.97246 1.44394 1.49551 1.28193 1.11745 1.18899 0.98411 1.06428 1.14086 0.91668 1.25801 1.01199 0.97711 0.97509 1.69916 1.36531 1.37655 1.15608 0.86087 0.83306 0.75628 0.78474 1.20579 1.23741 1.18813 1.21750 0.98897 0.94908 0.85037 1.22295 0.96571 0.93587 0.83658 0.90969 1.86468 1.62657 1.62068 1.26420 0.90189 0.86795 0.90511 0.77828 0.81553 0.82407 0.74971 0.91425 0.90716 0.95270 0.92455 0.92827 0.94862 0.90194 0.75205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.17 10.61 127.77 1.36 2.52 16 2 N -0.42 -9.11 3.16 -534.31 -1.69 -10.80 16 3 C 0.02 0.36 11.38 83.48 0.95 1.31 16 4 C -0.22 -3.63 10.81 22.01 0.24 -3.39 16 5 C -0.14 -2.80 10.35 22.57 0.23 -2.57 16 6 C -0.09 -2.33 6.88 40.35 0.28 -2.05 16 7 C 0.58 18.25 7.73 86.45 0.67 18.91 16 8 O -0.59 -22.24 14.30 -4.33 -0.06 -22.31 16 9 N -0.69 -19.63 4.90 -446.36 -2.19 -21.81 16 10 C 0.17 5.62 2.16 45.02 0.10 5.72 16 11 H 0.07 2.60 7.51 -2.39 -0.02 2.58 16 12 C -0.13 -4.63 5.65 30.67 0.17 -4.45 16 13 C 0.12 5.38 4.18 86.36 0.36 5.74 16 14 N -0.61 -28.03 2.77 -699.09 -1.94 -29.97 16 15 C -0.25 -13.62 10.05 84.04 0.84 -12.77 16 16 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 17 C -0.03 -1.54 5.25 84.87 0.45 -1.09 16 18 N -0.95 -58.69 13.97 21.65 0.30 -58.39 16 19 Si 0.94 46.71 24.34 68.60 1.67 48.38 16 20 H -0.28 -13.36 6.72 99.48 0.67 -12.69 16 21 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 22 H -0.26 -12.80 6.39 99.48 0.64 -12.17 16 23 C 0.12 4.37 6.14 86.36 0.53 4.91 16 24 C 0.10 3.00 3.14 30.67 0.10 3.10 16 25 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 26 O -0.57 -14.45 13.16 -148.98 -1.96 -16.41 16 27 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.87 6.27 -2.38 -0.01 1.85 16 30 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.16 2.56 7.45 -2.91 -0.02 2.54 16 33 H 0.41 9.46 7.50 -92.70 -0.70 8.76 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.03 1.29 6.94 -2.39 -0.02 1.27 16 37 H 0.06 2.72 4.49 -2.38 -0.01 2.71 16 38 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 2.75 7.93 -2.39 -0.02 2.73 16 41 H 0.40 6.52 9.08 -74.05 -0.67 5.85 16 Total: -1.00 -74.42 329.69 -0.01 -74.43 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.42 Total: 21.02 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 6.27 Total: 15.87 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -5.51 Total: -120.98 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -2.02 Total: -38.72 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.67 Total: 48.38 kcal Total: -74.42 -0.01 -74.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090088416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.702 kcal (2) G-P(sol) polarization free energy of solvation -74.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds