Wall clock time and date at job start Tue Mar 31 2020 03:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35534 * 125.67737 * 2 1 4 4 C 1.35462 * 108.86847 * 180.02562 * 3 2 1 5 5 C 1.39833 * 107.86498 * 359.74211 * 4 3 2 6 6 C 1.37660 * 125.67770 * 180.02562 * 2 1 3 7 7 C 1.46672 * 126.23153 * 359.97438 * 6 2 1 8 8 O 1.21702 * 120.00260 * 5.17776 * 7 6 2 9 9 N 1.34781 * 119.99933 * 185.17327 * 7 6 2 10 10 C 1.46498 * 119.99930 * 175.54456 * 9 7 6 11 11 H 1.09004 * 109.46298 * 35.00601 * 10 9 7 12 12 C 1.53029 * 109.46470 * 275.03112 * 10 9 7 13 13 C 1.53165 * 109.32730 * 301.36098 * 12 10 9 14 14 N 1.46921 * 108.76676 * 305.35377 * 13 12 10 15 15 C 1.36942 * 120.63346 * 233.63437 * 14 13 12 16 16 H 1.07994 * 120.00687 * 140.57256 * 15 14 13 17 17 C 1.38816 * 119.99408 * 320.57272 * 15 14 13 18 18 N 1.31619 * 120.00488 * 353.99730 * 17 15 14 19 19 Si 1.86800 * 119.99896 * 174.00195 * 17 15 14 20 20 H 1.48499 * 109.47397 * 89.99775 * 19 17 15 21 21 H 1.48496 * 109.47225 * 210.00228 * 19 17 15 22 22 H 1.48512 * 109.47029 * 330.00053 * 19 17 15 23 23 C 1.46924 * 118.73991 * 53.60956 * 14 13 12 24 24 C 1.53043 * 109.45691 * 154.97528 * 10 9 7 25 25 H 1.09006 * 109.49747 * 178.64342 * 24 10 9 26 26 O 1.42898 * 109.49669 * 298.70407 * 24 10 9 27 27 H 1.09005 * 109.47478 * 270.84916 * 1 2 3 28 28 H 1.09002 * 109.47382 * 30.85231 * 1 2 3 29 29 H 1.09006 * 109.47362 * 150.85163 * 1 2 3 30 30 H 1.07995 * 125.56873 * 0.05388 * 3 2 1 31 31 H 1.07994 * 126.06326 * 180.02562 * 4 3 2 32 32 H 1.08003 * 126.45674 * 180.30842 * 5 4 3 33 33 H 0.96995 * 120.00072 * 355.55211 * 9 7 6 34 34 H 1.09001 * 109.49745 * 61.29730 * 12 10 9 35 35 H 1.09008 * 109.50126 * 181.39424 * 12 10 9 36 36 H 1.09003 * 109.59228 * 185.56956 * 13 12 10 37 37 H 1.08994 * 109.71255 * 65.20704 * 13 12 10 38 38 H 0.96994 * 120.00259 * 180.02562 * 18 17 15 39 39 H 1.09008 * 109.58931 * 186.60386 * 23 14 13 40 40 H 1.08999 * 109.70564 * 66.24913 * 23 14 13 41 41 H 0.96699 * 114.00160 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5522 0.7092 -0.0006 5 6 3.5779 -0.6888 0.0050 6 6 2.2678 -1.1182 -0.0005 7 6 1.8124 -2.5124 -0.0006 8 8 0.6256 -2.7650 -0.0953 9 7 2.7082 -3.5140 0.1041 10 6 2.2477 -4.9013 0.2024 11 1 1.3509 -5.0301 -0.4037 12 6 1.9279 -5.2303 1.6623 13 6 3.1809 -5.0151 2.5166 14 7 4.2820 -5.8041 1.9478 15 6 4.9850 -6.6840 2.7268 16 1 5.2893 -7.6385 2.3236 17 6 5.3065 -6.3489 4.0350 18 7 5.0409 -5.1426 4.4897 19 14 6.1164 -7.6099 5.1500 20 1 7.5924 -7.5071 5.0236 21 1 5.7211 -7.3520 6.5580 22 1 5.6795 -8.9732 4.7549 23 6 4.6143 -5.6316 0.5270 24 6 3.3450 -5.8398 -0.3050 25 1 3.0124 -6.8735 -0.2097 26 8 3.6216 -5.5523 -1.6771 27 1 -0.3634 0.0152 1.0276 28 1 -0.3634 0.8822 -0.5270 29 1 -0.3634 -0.8976 -0.5006 30 1 1.9082 2.1236 0.0008 31 1 4.4132 1.3611 -0.0003 32 1 4.4583 -1.3145 0.0108 33 1 3.6577 -3.3163 0.1146 34 1 1.1302 -4.5771 2.0161 35 1 1.6089 -6.2697 1.7396 36 1 2.9871 -5.3417 3.5383 37 1 3.4497 -3.9588 2.5154 38 1 5.2659 -4.9084 5.4037 39 1 5.3664 -6.3651 0.2359 40 1 5.0004 -4.6262 0.3593 41 1 4.3093 -6.1105 -2.0651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090088417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:34 Heat of formation + Delta-G solvation = -11.987885 kcal Electronic energy + Delta-G solvation = -24451.419382 eV Core-core repulsion = 20946.891766 eV Total energy + Delta-G solvation = -3504.527616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.22273 -39.41602 -37.61103 -35.38947 -34.12107 -32.78917 -31.73038 -30.36424 -29.11071 -28.25247 -26.41600 -25.30467 -22.95596 -22.17153 -21.73440 -20.49118 -19.52531 -18.65131 -17.83769 -17.01441 -16.50453 -15.75416 -15.50992 -15.12168 -14.90937 -14.38438 -14.23843 -13.96579 -13.65081 -13.30969 -13.22313 -13.18513 -12.71282 -12.33485 -12.26180 -12.14932 -12.05070 -11.82901 -11.62641 -11.12466 -10.93700 -10.66638 -10.42162 -10.21462 -9.98623 -9.82446 -9.60340 -9.38868 -8.65429 -8.62945 -8.54010 -8.06575 -6.59001 -5.87596 -3.45715 1.67067 2.77941 2.86566 3.31987 3.39155 3.40235 3.66142 3.72611 4.36701 4.52331 4.84128 5.00679 5.07111 5.24901 5.30425 5.35371 5.47826 5.50230 5.51926 5.59147 5.67304 5.72577 5.97453 6.07038 6.17447 6.25257 6.31539 6.48180 6.53772 6.68434 6.72024 6.83488 6.99063 7.08445 7.27277 7.29576 7.59006 7.73001 7.92083 7.94715 8.43784 8.55870 9.13834 9.70948 10.33779 11.20020 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.004605 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.417891 B = 6078.421592 C = 6676.598357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.413 5.413 3 C 0.005 3.995 4 C -0.207 4.207 5 C -0.139 4.139 6 C -0.045 4.045 7 C 0.589 3.411 8 O -0.564 6.564 9 N -0.690 5.690 10 C 0.168 3.832 11 H 0.080 0.920 12 C -0.154 4.154 13 C 0.176 3.824 14 N -0.584 5.584 15 C -0.267 4.267 16 H 0.061 0.939 17 C 0.017 3.983 18 N -0.896 5.896 19 Si 0.904 3.096 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.118 3.882 24 C 0.075 3.925 25 H 0.066 0.934 26 O -0.571 6.571 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.166 0.834 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.405 0.595 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.025 0.975 38 H 0.256 0.744 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 8.384 -9.563 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.086 5.086 3 C -0.130 4.130 4 C -0.232 4.232 5 C -0.165 4.165 6 C -0.158 4.158 7 C 0.377 3.623 8 O -0.445 6.445 9 N -0.340 5.340 10 C 0.064 3.936 11 H 0.098 0.902 12 C -0.194 4.194 13 C 0.050 3.950 14 N -0.309 5.309 15 C -0.397 4.397 16 H 0.079 0.921 17 C -0.183 4.183 18 N -0.538 5.538 19 Si 0.733 3.267 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.009 4.009 24 C 0.014 3.986 25 H 0.084 0.916 26 O -0.375 6.375 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.183 0.817 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.242 0.758 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.693 8.666 -9.334 14.388 hybrid contribution 1.383 -0.778 0.702 1.735 sum -5.311 7.888 -8.632 12.843 Atomic orbital electron populations 1.22272 0.76404 1.05178 1.03756 1.43816 1.06677 1.05008 1.53103 1.21948 0.90782 0.91358 1.08868 1.20798 0.95907 0.95045 1.11422 1.21400 0.94668 0.95484 1.04949 1.20148 0.90415 0.87743 1.17496 1.16925 0.85649 0.83492 0.76230 1.90711 1.16442 1.84920 1.52467 1.45586 1.09965 1.05830 1.72643 1.20842 0.96421 0.79193 0.97171 0.90186 1.22605 1.01120 1.01294 0.94383 1.20709 0.83708 0.94313 0.96229 1.43843 1.35174 1.47869 1.03990 1.19047 1.30793 0.95471 0.94384 0.92130 1.25397 0.98012 0.95699 0.99217 1.69957 1.49444 1.18151 1.16226 0.86301 0.79473 0.81001 0.79956 1.21140 1.21522 1.20283 1.21573 0.93623 0.98751 0.86967 1.22754 0.97267 0.97641 0.80895 0.91579 1.86489 1.61355 1.64074 1.25575 0.90816 0.90309 0.87591 0.81713 0.84156 0.83869 0.75848 0.92050 0.91400 0.90296 0.95698 0.93383 0.92223 0.95961 0.77982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 10.66 59.84 0.64 1.37 16 2 N -0.41 -5.76 3.16 -120.23 -0.38 -6.14 16 3 C 0.01 0.06 11.38 -16.91 -0.19 -0.13 16 4 C -0.21 -2.66 10.81 -39.98 -0.43 -3.09 16 5 C -0.14 -2.07 10.35 -39.12 -0.41 -2.47 16 6 C -0.04 -0.73 6.89 -81.98 -0.56 -1.29 16 7 C 0.59 10.75 7.74 -12.85 -0.10 10.65 16 8 O -0.56 -11.24 14.26 5.19 0.07 -11.16 16 9 N -0.69 -12.27 4.14 -55.08 -0.23 -12.50 16 10 C 0.17 3.07 2.50 -67.89 -0.17 2.90 16 11 H 0.08 1.51 7.52 -51.93 -0.39 1.12 16 12 C -0.15 -3.02 5.77 -26.63 -0.15 -3.17 16 13 C 0.18 4.08 4.95 -3.73 -0.02 4.07 16 14 N -0.58 -13.84 2.94 -172.34 -0.51 -14.35 16 15 C -0.27 -7.01 9.49 -15.06 -0.14 -7.15 16 16 H 0.06 1.56 7.83 -52.49 -0.41 1.15 16 17 C 0.02 0.47 5.11 -17.43 -0.09 0.38 16 18 N -0.90 -25.29 11.42 55.49 0.63 -24.65 16 19 Si 0.90 20.97 29.56 -169.99 -5.02 15.95 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.12 2.30 5.84 -3.71 -0.02 2.28 16 24 C 0.08 1.28 3.36 -26.61 -0.09 1.19 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 26 O -0.57 -8.68 13.21 -35.23 -0.47 -9.15 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.11 1.40 6.17 -51.93 -0.32 1.08 16 30 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.14 2.00 7.45 -52.48 -0.39 1.61 16 33 H 0.40 7.03 5.77 -40.82 -0.24 6.79 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.30 8.14 -51.92 -0.42 0.87 16 36 H 0.08 2.07 6.60 -51.93 -0.34 1.72 16 37 H 0.02 0.62 7.74 -51.93 -0.40 0.21 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.06 1.12 7.93 -51.92 -0.41 0.70 16 40 H 0.02 0.44 6.65 -51.93 -0.35 0.10 16 41 H 0.37 4.06 9.08 45.56 0.41 4.48 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -31.88 332.76 -7.55 -39.44 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -4.93 Total: 12.02 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -1.74 Total: 5.54 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.48 Total: -57.64 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.39 Total: -20.31 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.88 -7.55 -39.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090088417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.451 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds