Wall clock time and date at job start Tue Mar 31 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35533 * 125.67783 * 2 1 4 4 C 1.35455 * 108.87443 * 179.97438 * 3 2 1 5 5 C 1.39840 * 107.86101 * 359.73897 * 4 3 2 6 6 C 1.37657 * 125.67929 * 179.97438 * 2 1 3 7 7 C 1.46674 * 126.22984 * 0.02562 * 6 2 1 8 8 O 1.21687 * 120.00576 * 5.37830 * 7 6 2 9 9 N 1.34779 * 119.99546 * 185.37972 * 7 6 2 10 10 C 1.46504 * 119.99932 * 185.23263 * 9 7 6 11 11 H 1.09006 * 109.44907 * 35.02989 * 10 9 7 12 12 C 1.53047 * 109.45989 * 275.06900 * 10 9 7 13 13 C 1.53192 * 109.31162 * 178.61402 * 12 10 9 14 14 N 1.46917 * 108.77666 * 54.63311 * 13 12 10 15 15 C 1.36941 * 120.63001 * 126.66733 * 14 13 12 16 16 H 1.07998 * 119.99575 * 327.37379 * 15 14 13 17 17 C 1.38816 * 120.00016 * 147.37994 * 15 14 13 18 18 N 1.31618 * 119.99705 * 167.91390 * 17 15 14 19 19 Si 1.86800 * 120.00015 * 347.90718 * 17 15 14 20 20 H 1.48502 * 109.46780 * 85.80070 * 19 17 15 21 21 H 1.48497 * 109.46943 * 205.80232 * 19 17 15 22 22 H 1.48501 * 109.46940 * 325.80324 * 19 17 15 23 23 C 1.46930 * 118.73948 * 306.39195 * 14 13 12 24 24 C 1.53036 * 109.46065 * 155.00065 * 10 9 7 25 25 H 1.08997 * 109.52490 * 61.41729 * 24 10 9 26 26 O 1.42900 * 109.49832 * 301.33426 * 24 10 9 27 27 H 1.08996 * 109.47174 * 264.50474 * 1 2 3 28 28 H 1.09000 * 109.47139 * 24.50755 * 1 2 3 29 29 H 1.08999 * 109.46703 * 144.50246 * 1 2 3 30 30 H 1.07997 * 125.56562 * 359.94804 * 3 2 1 31 31 H 1.07994 * 126.06880 * 179.97438 * 4 3 2 32 32 H 1.07997 * 126.45759 * 180.26676 * 5 4 3 33 33 H 0.97000 * 120.00579 * 5.23062 * 9 7 6 34 34 H 1.09004 * 109.49532 * 298.56607 * 12 10 9 35 35 H 1.09001 * 109.49386 * 58.62696 * 12 10 9 36 36 H 1.09004 * 109.58345 * 294.84523 * 13 12 10 37 37 H 1.08997 * 109.58385 * 174.42401 * 13 12 10 38 38 H 0.96996 * 119.99865 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.58364 * 173.39649 * 23 14 13 40 40 H 1.08999 * 109.58749 * 293.67555 * 23 14 13 41 41 H 0.96700 * 114.00095 * 180.15714 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5522 0.7094 0.0006 5 6 3.5780 -0.6888 0.0070 6 6 2.2679 -1.1182 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.6262 -2.7651 -0.0986 9 7 2.7078 -3.5138 0.1105 10 6 2.2672 -4.9063 -0.0043 11 1 1.4588 -4.9723 -0.7325 12 6 1.7686 -5.3972 1.3568 13 6 1.2767 -6.8420 1.2252 14 7 2.3535 -7.6573 0.6471 15 6 2.7737 -8.8018 1.2707 16 1 2.7524 -8.8683 2.3484 17 6 3.2272 -9.8762 0.5177 18 7 3.8489 -10.8761 1.1058 19 14 2.9547 -9.9028 -1.3301 20 1 4.0572 -9.1705 -2.0036 21 1 2.9308 -11.3090 -1.8067 22 1 1.6596 -9.2500 -1.6489 23 6 2.9667 -7.2248 -0.6162 24 6 3.4398 -5.7757 -0.4638 25 1 4.2392 -5.7298 0.2757 26 8 3.9243 -5.2977 -1.7203 27 1 -0.3633 -0.0984 1.0229 28 1 -0.3633 0.9351 -0.4263 29 1 -0.3633 -0.8367 -0.5967 30 1 1.9082 2.1236 -0.0008 31 1 4.4132 1.3612 0.0003 32 1 4.4583 -1.3144 0.0131 33 1 3.6439 -3.3125 0.2657 34 1 2.5834 -5.3547 2.0797 35 1 0.9492 -4.7626 1.6945 36 1 0.4043 -6.8728 0.5724 37 1 1.0131 -7.2293 2.2093 38 1 4.1655 -11.6270 0.5797 39 1 3.8184 -7.8649 -0.8469 40 1 2.2329 -7.2894 -1.4195 41 1 4.6681 -5.8047 -2.0737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090088418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:36 Heat of formation + Delta-G solvation = -6.113029 kcal Electronic energy + Delta-G solvation = -24051.159373 eV Core-core repulsion = 20546.886510 eV Total energy + Delta-G solvation = -3504.272863 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45266 -39.51868 -37.93521 -35.52569 -34.59818 -33.01627 -32.17540 -30.55083 -29.47403 -28.70660 -26.62854 -25.19763 -23.23092 -22.54586 -21.52449 -20.58902 -19.95884 -19.39103 -17.99337 -16.99651 -16.84869 -16.22656 -15.75720 -15.68851 -14.98354 -14.40628 -14.34423 -14.13525 -13.88800 -13.51581 -13.35647 -13.34288 -12.93753 -12.56422 -12.50415 -12.42137 -12.32407 -12.13866 -12.11180 -11.37953 -11.06096 -10.88393 -10.55945 -10.36802 -10.00337 -9.74711 -9.65962 -9.51154 -8.91286 -8.87562 -8.71206 -8.31726 -7.02235 -6.01861 -3.47581 1.42857 2.55328 2.62008 3.20733 3.38764 3.42527 3.44292 3.45568 4.30861 4.43462 4.64108 4.78272 4.83306 4.91879 5.08182 5.16751 5.25335 5.27625 5.28666 5.42116 5.47526 5.59922 5.74453 5.79831 5.91772 5.98602 6.05278 6.22951 6.26324 6.37630 6.47393 6.56208 6.59479 6.71853 6.81249 6.84822 7.06107 7.63784 7.80174 7.96224 8.26841 8.30155 8.83878 9.61439 9.99158 11.13897 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032274 B = 0.003765 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.351090 B = 7435.259687 C = 7709.367482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.412 5.412 3 C 0.008 3.992 4 C -0.209 4.209 5 C -0.142 4.142 6 C -0.046 4.046 7 C 0.587 3.413 8 O -0.554 6.554 9 N -0.702 5.702 10 C 0.166 3.834 11 H 0.089 0.911 12 C -0.142 4.142 13 C 0.149 3.851 14 N -0.603 5.603 15 C -0.264 4.264 16 H 0.088 0.912 17 C 0.025 3.975 18 N -0.911 5.911 19 Si 0.894 3.106 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.096 3.904 24 C 0.080 3.920 25 H 0.064 0.936 26 O -0.570 6.570 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.167 0.833 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.264 0.736 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 22.143 -2.727 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.085 5.085 3 C -0.127 4.127 4 C -0.233 4.233 5 C -0.168 4.168 6 C -0.160 4.160 7 C 0.375 3.625 8 O -0.434 6.434 9 N -0.351 5.351 10 C 0.062 3.938 11 H 0.107 0.893 12 C -0.182 4.182 13 C 0.022 3.978 14 N -0.329 5.329 15 C -0.392 4.392 16 H 0.105 0.895 17 C -0.175 4.175 18 N -0.554 5.554 19 Si 0.725 3.275 20 H -0.215 1.215 21 H -0.231 1.231 22 H -0.195 1.195 23 C -0.031 4.031 24 C 0.019 3.981 25 H 0.082 0.918 26 O -0.375 6.375 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.184 0.816 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.235 0.765 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.065 22.165 -2.731 22.542 hybrid contribution 0.916 -0.343 -1.054 1.438 sum -2.149 21.822 -3.786 22.252 Atomic orbital electron populations 1.22247 0.76152 1.04740 1.04224 1.43866 1.06825 1.05026 1.52783 1.21997 0.90777 0.91435 1.08510 1.20811 0.95958 0.95039 1.11492 1.21372 0.94549 0.95461 1.05461 1.20178 0.90450 0.87740 1.17647 1.16966 0.85707 0.83425 0.76403 1.90766 1.16211 1.84875 1.51528 1.45702 1.11153 1.05809 1.72457 1.20974 0.96560 0.78104 0.98162 0.89330 1.22437 1.01271 0.98809 0.95656 1.20977 0.90029 0.88391 0.98354 1.44306 1.38087 1.26368 1.24095 1.18941 1.38978 0.88920 0.92409 0.89456 1.25431 0.98855 0.95204 0.97972 1.69754 1.39918 1.09950 1.35747 0.86880 0.78690 0.75532 0.86409 1.21545 1.23073 1.19521 1.22154 0.98008 0.92726 0.90212 1.22784 0.95306 0.94859 0.85129 0.91830 1.86450 1.54144 1.59121 1.37798 0.90627 0.90023 0.87979 0.81588 0.84095 0.83882 0.76475 0.91496 0.91225 0.95358 0.91072 0.92582 0.90166 0.94492 0.77580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.49 59.85 0.63 1.26 16 2 N -0.41 -4.78 3.16 -120.24 -0.38 -5.16 16 3 C 0.01 0.08 11.37 -16.91 -0.19 -0.12 16 4 C -0.21 -2.09 10.81 -39.98 -0.43 -2.52 16 5 C -0.14 -1.64 10.35 -39.12 -0.40 -2.05 16 6 C -0.05 -0.63 6.89 -81.98 -0.56 -1.19 16 7 C 0.59 9.19 7.73 -12.85 -0.10 9.09 16 8 O -0.55 -10.02 14.42 5.20 0.07 -9.95 16 9 N -0.70 -10.35 4.89 -55.07 -0.27 -10.62 16 10 C 0.17 2.81 2.08 -67.89 -0.14 2.67 16 11 H 0.09 1.70 7.66 -51.93 -0.40 1.30 16 12 C -0.14 -2.42 5.65 -26.61 -0.15 -2.57 16 13 C 0.15 2.94 6.51 -3.72 -0.02 2.91 16 14 N -0.60 -13.94 2.74 -172.32 -0.47 -14.41 16 15 C -0.26 -7.18 10.06 -15.06 -0.15 -7.33 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.02 0.70 5.35 -17.43 -0.09 0.60 16 18 N -0.91 -27.35 13.97 55.49 0.78 -26.57 16 19 Si 0.89 22.02 24.23 -169.99 -4.12 17.90 16 20 H -0.29 -6.63 6.42 56.52 0.36 -6.27 16 21 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 22 H -0.27 -6.66 6.57 56.52 0.37 -6.28 16 23 C 0.10 2.01 3.78 -3.71 -0.01 2.00 16 24 C 0.08 1.39 3.14 -26.61 -0.08 1.30 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 26 O -0.57 -8.93 13.16 -35.23 -0.46 -9.39 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 29 H 0.10 1.17 6.53 -51.93 -0.34 0.83 16 30 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.14 1.39 7.49 -52.49 -0.39 1.00 16 33 H 0.40 5.05 7.55 -40.82 -0.31 4.74 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.08 1.79 4.43 -51.93 -0.23 1.56 16 40 H 0.04 0.81 6.88 -51.93 -0.36 0.45 16 41 H 0.38 4.59 9.08 45.56 0.41 5.00 16 LS Contribution 329.66 15.07 4.97 4.97 Total: -1.00 -33.34 329.66 -6.64 -39.98 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.03 Total: 9.17 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.72 Total: 4.08 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.35 Total: -56.76 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.39 Total: -19.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.12 Total: 17.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.34 -6.64 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090088418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.868 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds