Wall clock time and date at job start Tue Mar 31 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35533 * 125.67783 * 2 1 4 4 C 1.35455 * 108.87443 * 179.97438 * 3 2 1 5 5 C 1.39840 * 107.86101 * 359.73897 * 4 3 2 6 6 C 1.37657 * 125.67929 * 179.97438 * 2 1 3 7 7 C 1.46674 * 126.22984 * 0.02562 * 6 2 1 8 8 O 1.21687 * 120.00576 * 5.37830 * 7 6 2 9 9 N 1.34779 * 119.99546 * 185.37972 * 7 6 2 10 10 C 1.46504 * 119.99932 * 185.23263 * 9 7 6 11 11 H 1.09006 * 109.44907 * 35.02989 * 10 9 7 12 12 C 1.53047 * 109.45989 * 275.06900 * 10 9 7 13 13 C 1.53192 * 109.31162 * 178.61402 * 12 10 9 14 14 N 1.46917 * 108.77666 * 54.63311 * 13 12 10 15 15 C 1.36941 * 120.63001 * 126.66733 * 14 13 12 16 16 H 1.07998 * 119.99575 * 327.37379 * 15 14 13 17 17 C 1.38816 * 120.00016 * 147.37994 * 15 14 13 18 18 N 1.31618 * 119.99705 * 167.91390 * 17 15 14 19 19 Si 1.86800 * 120.00015 * 347.90718 * 17 15 14 20 20 H 1.48502 * 109.46780 * 85.80070 * 19 17 15 21 21 H 1.48497 * 109.46943 * 205.80232 * 19 17 15 22 22 H 1.48501 * 109.46940 * 325.80324 * 19 17 15 23 23 C 1.46930 * 118.73948 * 306.39195 * 14 13 12 24 24 C 1.53036 * 109.46065 * 155.00065 * 10 9 7 25 25 H 1.08997 * 109.52490 * 61.41729 * 24 10 9 26 26 O 1.42900 * 109.49832 * 301.33426 * 24 10 9 27 27 H 1.08996 * 109.47174 * 264.50474 * 1 2 3 28 28 H 1.09000 * 109.47139 * 24.50755 * 1 2 3 29 29 H 1.08999 * 109.46703 * 144.50246 * 1 2 3 30 30 H 1.07997 * 125.56562 * 359.94804 * 3 2 1 31 31 H 1.07994 * 126.06880 * 179.97438 * 4 3 2 32 32 H 1.07997 * 126.45759 * 180.26676 * 5 4 3 33 33 H 0.97000 * 120.00579 * 5.23062 * 9 7 6 34 34 H 1.09004 * 109.49532 * 298.56607 * 12 10 9 35 35 H 1.09001 * 109.49386 * 58.62696 * 12 10 9 36 36 H 1.09004 * 109.58345 * 294.84523 * 13 12 10 37 37 H 1.08997 * 109.58385 * 174.42401 * 13 12 10 38 38 H 0.96996 * 119.99865 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.58364 * 173.39649 * 23 14 13 40 40 H 1.08999 * 109.58749 * 293.67555 * 23 14 13 41 41 H 0.96700 * 114.00095 * 180.15714 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5522 0.7094 0.0006 5 6 3.5780 -0.6888 0.0070 6 6 2.2679 -1.1182 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.6262 -2.7651 -0.0986 9 7 2.7078 -3.5138 0.1105 10 6 2.2672 -4.9063 -0.0043 11 1 1.4588 -4.9723 -0.7325 12 6 1.7686 -5.3972 1.3568 13 6 1.2767 -6.8420 1.2252 14 7 2.3535 -7.6573 0.6471 15 6 2.7737 -8.8018 1.2707 16 1 2.7524 -8.8683 2.3484 17 6 3.2272 -9.8762 0.5177 18 7 3.8489 -10.8761 1.1058 19 14 2.9547 -9.9028 -1.3301 20 1 4.0572 -9.1705 -2.0036 21 1 2.9308 -11.3090 -1.8067 22 1 1.6596 -9.2500 -1.6489 23 6 2.9667 -7.2248 -0.6162 24 6 3.4398 -5.7757 -0.4638 25 1 4.2392 -5.7298 0.2757 26 8 3.9243 -5.2977 -1.7203 27 1 -0.3633 -0.0984 1.0229 28 1 -0.3633 0.9351 -0.4263 29 1 -0.3633 -0.8367 -0.5967 30 1 1.9082 2.1236 -0.0008 31 1 4.4132 1.3612 0.0003 32 1 4.4583 -1.3144 0.0131 33 1 3.6439 -3.3125 0.2657 34 1 2.5834 -5.3547 2.0797 35 1 0.9492 -4.7626 1.6945 36 1 0.4043 -6.8728 0.5724 37 1 1.0131 -7.2293 2.2093 38 1 4.1655 -11.6270 0.5797 39 1 3.8184 -7.8649 -0.8469 40 1 2.2329 -7.2894 -1.4195 41 1 4.6681 -5.8047 -2.0737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090088418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:36 Heat of formation + Delta-G solvation = -32.145466 kcal Electronic energy + Delta-G solvation = -24052.288224 eV Core-core repulsion = 20546.886510 eV Total energy + Delta-G solvation = -3505.401715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.31089 -40.80837 -39.31051 -37.04889 -35.94719 -34.26863 -33.62489 -32.11396 -30.88538 -29.88526 -27.36909 -26.92153 -24.80770 -23.85728 -22.95874 -21.51973 -21.31778 -20.52637 -19.16219 -18.60952 -18.31904 -17.67858 -16.91634 -16.60382 -16.48150 -16.11840 -15.56992 -15.30474 -15.22151 -14.98375 -14.71833 -14.36427 -14.20670 -14.10140 -14.01273 -13.69562 -13.24600 -13.17169 -13.04289 -12.89008 -12.74630 -12.50071 -12.38319 -12.01404 -11.73521 -11.43230 -11.13474 -11.05993 -10.69534 -10.17255 -9.67511 -9.16240 -8.96012 -8.19050 -5.61915 0.48811 1.24445 1.40900 1.48551 1.67751 1.84740 2.34916 2.36784 2.40362 2.90031 3.13503 3.28760 3.72400 3.80898 3.97078 3.99367 4.04739 4.20763 4.22516 4.32993 4.37633 4.49068 4.52211 4.57724 4.66616 4.72538 4.75626 4.88668 4.89711 4.99598 5.18308 5.26562 5.29712 5.39975 5.83102 5.84877 6.01400 6.11215 6.34569 6.52811 6.71675 6.87081 7.16387 7.53146 7.94920 9.00352 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032274 B = 0.003765 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.351090 B = 7435.259687 C = 7709.367482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.422 5.422 3 C 0.024 3.976 4 C -0.222 4.222 5 C -0.137 4.137 6 C -0.090 4.090 7 C 0.584 3.416 8 O -0.588 6.588 9 N -0.694 5.694 10 C 0.173 3.827 11 H 0.067 0.933 12 C -0.126 4.126 13 C 0.145 3.855 14 N -0.615 5.615 15 C -0.253 4.253 16 H 0.057 0.943 17 C -0.029 4.029 18 N -0.957 5.957 19 Si 0.951 3.049 20 H -0.260 1.260 21 H -0.311 1.311 22 H -0.271 1.271 23 C 0.092 3.908 24 C 0.098 3.902 25 H 0.073 0.927 26 O -0.569 6.569 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.206 0.794 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.412 0.588 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.030 0.970 37 H 0.068 0.932 38 H 0.264 0.736 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 25.436 -3.837 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.095 5.095 3 C -0.112 4.112 4 C -0.245 4.245 5 C -0.164 4.164 6 C -0.202 4.202 7 C 0.374 3.626 8 O -0.470 6.470 9 N -0.344 5.344 10 C 0.068 3.932 11 H 0.085 0.915 12 C -0.166 4.166 13 C 0.020 3.980 14 N -0.341 5.341 15 C -0.382 4.382 16 H 0.074 0.926 17 C -0.224 4.224 18 N -0.603 5.603 19 Si 0.780 3.220 20 H -0.186 1.186 21 H -0.240 1.240 22 H -0.196 1.196 23 C -0.034 4.034 24 C 0.037 3.963 25 H 0.091 0.909 26 O -0.376 6.376 27 H 0.095 0.905 28 H 0.136 0.864 29 H 0.094 0.906 30 H 0.222 0.778 31 H 0.184 0.816 32 H 0.174 0.826 33 H 0.249 0.751 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.393 25.503 -3.856 25.904 hybrid contribution 0.699 -1.236 -0.657 1.564 sum -1.695 24.267 -4.514 24.742 Atomic orbital electron populations 1.22312 0.75427 1.05539 1.04150 1.44122 1.07542 1.05083 1.52739 1.22730 0.90524 0.92426 1.05509 1.21205 0.97201 0.94585 1.11494 1.21699 0.94187 0.96680 1.03835 1.20014 0.91667 0.87140 1.21415 1.17338 0.85240 0.84512 0.75537 1.90743 1.17576 1.85511 1.53195 1.45484 1.11744 1.04711 1.72454 1.20693 0.95838 0.79479 0.97225 0.91500 1.22235 1.01512 0.96805 0.96081 1.21080 0.89376 0.89516 0.98016 1.44375 1.39296 1.25758 1.24648 1.18857 1.37598 0.90386 0.91405 0.92552 1.26036 0.99189 0.94981 1.02229 1.69886 1.41957 1.10983 1.37438 0.85932 0.79283 0.75124 0.81617 1.18568 1.24019 1.19619 1.22171 0.97331 0.95006 0.88875 1.22393 0.95466 0.92313 0.86161 0.90924 1.86440 1.55065 1.59187 1.36950 0.90479 0.86441 0.90614 0.77752 0.81650 0.82634 0.75109 0.91038 0.90677 0.95175 0.91353 0.92719 0.91218 0.94955 0.75541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 10.49 127.77 1.34 2.49 16 2 N -0.42 -8.87 3.16 -534.33 -1.69 -10.56 16 3 C 0.02 0.36 11.37 83.48 0.95 1.31 16 4 C -0.22 -3.64 10.81 22.01 0.24 -3.40 16 5 C -0.14 -2.83 10.35 22.57 0.23 -2.60 16 6 C -0.09 -2.29 6.89 40.35 0.28 -2.01 16 7 C 0.58 17.92 7.73 86.45 0.67 18.59 16 8 O -0.59 -21.42 14.42 -4.31 -0.06 -21.48 16 9 N -0.69 -19.60 4.89 -446.36 -2.18 -21.78 16 10 C 0.17 5.68 2.08 45.02 0.09 5.78 16 11 H 0.07 2.53 7.66 -2.38 -0.02 2.51 16 12 C -0.13 -4.22 5.65 30.67 0.17 -4.05 16 13 C 0.15 5.74 6.51 86.36 0.56 6.30 16 14 N -0.61 -28.33 2.74 -699.10 -1.92 -30.25 16 15 C -0.25 -14.00 10.06 84.03 0.85 -13.16 16 16 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 17 C -0.03 -1.66 5.35 84.86 0.45 -1.20 16 18 N -0.96 -58.83 13.97 21.65 0.30 -58.52 16 19 Si 0.95 45.55 24.23 68.60 1.66 47.21 16 20 H -0.26 -11.15 6.42 99.48 0.64 -10.51 16 21 H -0.31 -15.26 7.11 99.48 0.71 -14.56 16 22 H -0.27 -12.89 6.57 99.48 0.65 -12.24 16 23 C 0.09 3.76 3.78 86.36 0.33 4.09 16 24 C 0.10 3.21 3.14 30.67 0.10 3.30 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 26 O -0.57 -16.35 13.16 -148.98 -1.96 -18.31 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.12 1.10 8.12 -2.39 -0.02 1.08 16 29 H 0.08 1.74 6.53 -2.39 -0.02 1.72 16 30 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.16 2.62 7.49 -2.91 -0.02 2.60 16 33 H 0.41 9.61 7.55 -92.71 -0.70 8.91 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.07 2.45 8.07 -2.39 -0.02 2.44 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 38 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.07 2.99 4.43 -2.38 -0.01 2.97 16 40 H 0.03 1.37 6.88 -2.39 -0.02 1.35 16 41 H 0.39 8.37 9.08 -74.06 -0.67 7.70 16 Total: -1.00 -73.42 329.66 -0.02 -73.45 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.43 Total: 24.82 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 6.26 Total: 15.43 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -5.49 Total: -121.11 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -2.02 Total: -39.80 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.66 Total: 47.21 kcal Total: -73.42 -0.02 -73.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090088418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.301 kcal (2) G-P(sol) polarization free energy of solvation -73.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds