Wall clock time and date at job start Tue Mar 31 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36452 * 124.85275 * 2 1 4 4 C 1.34489 * 108.85558 * 180.02562 * 3 2 1 5 5 C 1.46690 * 106.33169 * 0.23978 * 4 3 2 6 6 C 1.47267 * 126.93623 * 179.74454 * 5 4 3 7 7 O 1.21625 * 119.99292 * 180.02562 * 6 5 4 8 8 N 1.34765 * 120.00217 * 0.02562 * 6 5 4 9 9 C 1.46501 * 119.99809 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46426 * 34.99899 * 9 8 6 11 11 C 1.53042 * 109.45889 * 275.02552 * 9 8 6 12 12 C 1.53196 * 109.31470 * 178.61739 * 11 9 8 13 13 N 1.46925 * 108.77669 * 54.62914 * 12 11 9 14 14 C 1.36942 * 120.62832 * 126.37131 * 13 12 11 15 15 H 1.07996 * 119.99503 * 331.83454 * 14 13 12 16 16 C 1.38810 * 120.00113 * 151.83636 * 14 13 12 17 17 N 1.31625 * 119.99640 * 343.08344 * 16 14 13 18 18 Si 1.86799 * 120.00255 * 163.08529 * 16 14 13 19 19 H 1.48497 * 109.46881 * 89.99657 * 18 16 14 20 20 H 1.48501 * 109.47210 * 209.99761 * 18 16 14 21 21 H 1.48505 * 109.46842 * 329.99867 * 18 16 14 22 22 C 1.46926 * 118.74249 * 306.39791 * 13 12 11 23 23 C 1.53045 * 109.46068 * 154.97169 * 9 8 6 24 24 H 1.08998 * 109.49641 * 301.33474 * 23 9 8 25 25 O 1.42898 * 109.49723 * 61.43305 * 23 9 8 26 26 C 1.34665 * 124.84969 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47086 * 90.02180 * 1 2 3 28 28 H 1.08996 * 109.47341 * 210.02160 * 1 2 3 29 29 H 1.08998 * 109.46825 * 330.02596 * 1 2 3 30 30 H 1.08001 * 125.57051 * 0.02562 * 3 2 1 31 31 H 1.07994 * 126.83109 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00468 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.49555 * 298.56635 * 11 9 8 34 34 H 1.08995 * 109.49959 * 58.65894 * 11 9 8 35 35 H 1.08991 * 109.58708 * 174.42066 * 12 11 9 36 36 H 1.09001 * 109.58041 * 294.84792 * 12 11 9 37 37 H 0.97002 * 119.99512 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.58707 * 173.38940 * 22 13 12 39 39 H 1.09001 * 109.58358 * 293.67615 * 22 13 12 40 40 H 0.96706 * 114.00036 * 179.97438 * 25 23 9 41 41 H 1.07997 * 125.79728 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1198 0.0000 4 6 3.5376 0.7491 -0.0006 5 6 3.5461 -0.7177 -0.0068 6 6 4.7284 -1.5958 -0.0149 7 8 4.5884 -2.8040 -0.0200 8 7 5.9652 -1.0607 -0.0167 9 6 7.1413 -1.9342 -0.0253 10 1 6.9287 -2.8236 -0.6184 11 6 7.4803 -2.3469 1.4089 12 6 8.6892 -3.2878 1.3931 13 7 9.7912 -2.6298 0.6780 14 6 11.0229 -2.4999 1.2621 15 1 11.1073 -2.4427 2.3373 16 6 12.1630 -2.4417 0.4724 17 7 12.1154 -2.8374 -0.7821 18 14 13.7646 -1.8019 1.1899 19 1 14.5300 -2.9311 1.7767 20 1 14.5682 -1.1642 0.1162 21 1 13.4688 -0.8019 2.2471 22 6 9.5464 -2.1134 -0.6756 23 6 8.3281 -1.1856 -0.6363 24 1 8.0774 -0.8714 -1.6494 25 8 8.6283 -0.0372 0.1594 26 6 2.2345 -1.1051 -0.0005 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5141 29 1 -0.3633 0.8902 0.5134 30 1 1.8829 2.1373 0.0004 31 1 4.3981 1.4016 -0.0011 32 1 6.0769 -0.0971 -0.0130 33 1 7.7174 -1.4598 1.9963 34 1 6.6262 -2.8593 1.8516 35 1 8.9960 -3.5057 2.4160 36 1 8.4245 -4.2142 0.8835 37 1 12.9122 -2.7971 -1.3338 38 1 10.4188 -1.5566 -1.0175 39 1 9.3541 -2.9443 -1.3544 40 1 9.3722 0.4858 -0.1697 41 1 1.8766 -2.1241 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090193885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:40 Heat of formation + Delta-G solvation = -9.634281 kcal Electronic energy + Delta-G solvation = -23725.816522 eV Core-core repulsion = 20221.390965 eV Total energy + Delta-G solvation = -3504.425556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29504 -39.26181 -37.62548 -34.71006 -34.09424 -33.01274 -31.87676 -29.53806 -29.12036 -28.93856 -26.85615 -24.97985 -22.85445 -22.09522 -21.38543 -20.19669 -19.60019 -19.10619 -17.91322 -17.12042 -15.88631 -15.65440 -15.61709 -15.33753 -14.86616 -14.35081 -14.24022 -13.85131 -13.68115 -13.43603 -13.23972 -13.12920 -12.76137 -12.68432 -12.46282 -12.15016 -11.93952 -11.89396 -11.19422 -11.03735 -10.73761 -10.53546 -10.38584 -10.09485 -9.97666 -9.68944 -9.46794 -9.08461 -8.77263 -8.56969 -8.46878 -8.29848 -6.61364 -5.76623 -3.17063 1.81745 2.33399 2.63637 3.39075 3.46368 3.49671 3.74316 3.82882 4.41496 4.52382 4.73910 4.75465 4.86574 4.93196 5.00556 5.27499 5.38877 5.39093 5.50999 5.57913 5.69233 5.80175 5.99444 6.07365 6.14690 6.32654 6.44132 6.58618 6.63874 6.69160 6.88023 6.88797 7.01655 7.05925 7.12755 7.26052 7.50052 7.82539 8.04582 8.32864 8.48904 8.71148 9.23335 9.86712 10.44191 11.32235 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.040843 B = 0.003223 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.384232 B = 8686.539860 C = 8946.803019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.451 5.451 3 C -0.022 4.022 4 C -0.167 4.167 5 C -0.227 4.227 6 C 0.585 3.415 7 O -0.560 6.560 8 N -0.713 5.713 9 C 0.164 3.836 10 H 0.089 0.911 11 C -0.136 4.136 12 C 0.148 3.852 13 N -0.583 5.583 14 C -0.241 4.241 15 H 0.065 0.935 16 C -0.002 4.002 17 N -0.908 5.908 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.146 3.854 23 C 0.073 3.927 24 H 0.043 0.957 25 O -0.559 6.559 26 C 0.069 3.931 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.146 0.854 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.019 0.981 37 H 0.253 0.747 38 H 0.094 0.906 39 H 0.027 0.973 40 H 0.374 0.626 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.181 9.317 -0.687 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.127 5.127 3 C -0.148 4.148 4 C -0.191 4.191 5 C -0.237 4.237 6 C 0.373 3.627 7 O -0.440 6.440 8 N -0.362 5.362 9 C 0.060 3.940 10 H 0.107 0.893 11 C -0.176 4.176 12 C 0.021 3.979 13 N -0.306 5.306 14 C -0.370 4.370 15 H 0.082 0.918 16 C -0.200 4.200 17 N -0.553 5.553 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.019 3.981 23 C 0.012 3.988 24 H 0.061 0.939 25 O -0.364 6.364 26 C -0.066 4.066 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.182 0.818 31 H 0.164 0.836 32 H 0.235 0.765 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.220 0.780 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -21.981 8.247 -0.448 23.481 hybrid contribution 1.344 1.043 -0.099 1.704 sum -20.637 9.291 -0.547 22.638 Atomic orbital electron populations 1.22091 0.77084 1.04558 1.03431 1.43600 1.06646 1.05970 1.56468 1.21714 0.90602 0.91182 1.11310 1.22097 0.96186 0.93406 1.07437 1.20491 0.92747 0.93387 1.17089 1.17406 0.82546 0.87013 0.75715 1.90751 1.86690 1.14703 1.51844 1.45965 1.05128 1.10681 1.74453 1.20960 0.82317 0.92613 0.98114 0.89305 1.22296 0.98678 1.00903 0.95724 1.20900 0.87656 0.92763 0.96549 1.43876 1.07534 1.64737 1.14404 1.19174 0.82732 1.43637 0.91498 0.91751 1.25022 0.97541 1.00799 0.96611 1.70026 1.28394 1.49510 1.07378 0.86300 0.83619 0.78842 0.78057 1.21488 1.21684 1.20502 1.21429 0.94504 0.94932 0.87280 1.22831 0.96443 0.87825 0.91675 0.93949 1.86358 1.54712 1.39574 1.55786 1.21778 0.89880 0.91658 1.03308 0.90757 0.89654 0.89709 0.81755 0.83644 0.76476 0.91294 0.92889 0.92539 0.96266 0.93708 0.88748 0.95462 0.77981 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.03 59.85 0.66 0.97 16 2 N -0.45 -4.02 3.09 -124.53 -0.38 -4.40 16 3 C -0.02 -0.20 11.34 -16.82 -0.19 -0.39 16 4 C -0.17 -1.90 10.56 -37.50 -0.40 -2.29 16 5 C -0.23 -3.19 6.29 -103.35 -0.65 -3.84 16 6 C 0.59 10.12 7.77 -12.60 -0.10 10.02 16 7 O -0.56 -11.49 16.57 5.26 0.09 -11.40 16 8 N -0.71 -11.88 5.05 -54.89 -0.28 -12.15 16 9 C 0.16 3.13 2.20 -67.89 -0.15 2.98 16 10 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 11 C -0.14 -2.74 5.51 -26.61 -0.15 -2.89 16 12 C 0.15 3.34 6.52 -3.71 -0.02 3.32 16 13 N -0.58 -14.76 2.93 -172.32 -0.51 -15.27 16 14 C -0.24 -6.63 9.58 -15.06 -0.14 -6.77 16 15 H 0.06 1.77 7.88 -52.49 -0.41 1.35 16 16 C 0.00 -0.06 4.92 -17.43 -0.09 -0.14 16 17 N -0.91 -26.07 11.20 55.49 0.62 -25.44 16 18 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.15 3.41 4.95 -3.71 -0.02 3.39 16 23 C 0.07 1.40 3.38 -26.61 -0.09 1.31 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 O -0.56 -10.26 12.08 -35.23 -0.43 -10.69 16 26 C 0.07 0.80 11.12 -16.84 -0.19 0.62 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.29 8.13 -51.93 -0.42 -0.14 16 29 H 0.08 0.23 8.13 -51.93 -0.42 -0.19 16 30 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.15 1.44 7.69 -52.49 -0.40 1.04 16 32 H 0.40 5.98 7.38 -40.82 -0.30 5.68 16 33 H 0.07 1.46 7.61 -51.93 -0.40 1.06 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.37 5.93 9.08 45.56 0.41 6.34 16 41 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -34.05 339.61 -7.47 -41.53 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.16 Total: 9.84 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -1.52 Total: 6.27 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.55 Total: -57.27 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.34 Total: -22.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.05 -7.47 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090193885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.893 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds