Wall clock time and date at job start Tue Mar 31 2020 03:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36452 * 124.85275 * 2 1 4 4 C 1.34489 * 108.85558 * 180.02562 * 3 2 1 5 5 C 1.46690 * 106.33169 * 0.23978 * 4 3 2 6 6 C 1.47267 * 126.93623 * 179.74454 * 5 4 3 7 7 O 1.21625 * 119.99292 * 180.02562 * 6 5 4 8 8 N 1.34765 * 120.00217 * 0.02562 * 6 5 4 9 9 C 1.46501 * 119.99809 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46426 * 34.99899 * 9 8 6 11 11 C 1.53042 * 109.45889 * 275.02552 * 9 8 6 12 12 C 1.53196 * 109.31470 * 178.61739 * 11 9 8 13 13 N 1.46925 * 108.77669 * 54.62914 * 12 11 9 14 14 C 1.36942 * 120.62832 * 126.37131 * 13 12 11 15 15 H 1.07996 * 119.99503 * 331.83454 * 14 13 12 16 16 C 1.38810 * 120.00113 * 151.83636 * 14 13 12 17 17 N 1.31625 * 119.99640 * 343.08344 * 16 14 13 18 18 Si 1.86799 * 120.00255 * 163.08529 * 16 14 13 19 19 H 1.48497 * 109.46881 * 89.99657 * 18 16 14 20 20 H 1.48501 * 109.47210 * 209.99761 * 18 16 14 21 21 H 1.48505 * 109.46842 * 329.99867 * 18 16 14 22 22 C 1.46926 * 118.74249 * 306.39791 * 13 12 11 23 23 C 1.53045 * 109.46068 * 154.97169 * 9 8 6 24 24 H 1.08998 * 109.49641 * 301.33474 * 23 9 8 25 25 O 1.42898 * 109.49723 * 61.43305 * 23 9 8 26 26 C 1.34665 * 124.84969 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47086 * 90.02180 * 1 2 3 28 28 H 1.08996 * 109.47341 * 210.02160 * 1 2 3 29 29 H 1.08998 * 109.46825 * 330.02596 * 1 2 3 30 30 H 1.08001 * 125.57051 * 0.02562 * 3 2 1 31 31 H 1.07994 * 126.83109 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00468 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.49555 * 298.56635 * 11 9 8 34 34 H 1.08995 * 109.49959 * 58.65894 * 11 9 8 35 35 H 1.08991 * 109.58708 * 174.42066 * 12 11 9 36 36 H 1.09001 * 109.58041 * 294.84792 * 12 11 9 37 37 H 0.97002 * 119.99512 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.58707 * 173.38940 * 22 13 12 39 39 H 1.09001 * 109.58358 * 293.67615 * 22 13 12 40 40 H 0.96706 * 114.00036 * 179.97438 * 25 23 9 41 41 H 1.07997 * 125.79728 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1198 0.0000 4 6 3.5376 0.7491 -0.0006 5 6 3.5461 -0.7177 -0.0068 6 6 4.7284 -1.5958 -0.0149 7 8 4.5884 -2.8040 -0.0200 8 7 5.9652 -1.0607 -0.0167 9 6 7.1413 -1.9342 -0.0253 10 1 6.9287 -2.8236 -0.6184 11 6 7.4803 -2.3469 1.4089 12 6 8.6892 -3.2878 1.3931 13 7 9.7912 -2.6298 0.6780 14 6 11.0229 -2.4999 1.2621 15 1 11.1073 -2.4427 2.3373 16 6 12.1630 -2.4417 0.4724 17 7 12.1154 -2.8374 -0.7821 18 14 13.7646 -1.8019 1.1899 19 1 14.5300 -2.9311 1.7767 20 1 14.5682 -1.1642 0.1162 21 1 13.4688 -0.8019 2.2471 22 6 9.5464 -2.1134 -0.6756 23 6 8.3281 -1.1856 -0.6363 24 1 8.0774 -0.8714 -1.6494 25 8 8.6283 -0.0372 0.1594 26 6 2.2345 -1.1051 -0.0005 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5141 29 1 -0.3633 0.8902 0.5134 30 1 1.8829 2.1373 0.0004 31 1 4.3981 1.4016 -0.0011 32 1 6.0769 -0.0971 -0.0130 33 1 7.7174 -1.4598 1.9963 34 1 6.6262 -2.8593 1.8516 35 1 8.9960 -3.5057 2.4160 36 1 8.4245 -4.2142 0.8835 37 1 12.9122 -2.7971 -1.3338 38 1 10.4188 -1.5566 -1.0175 39 1 9.3541 -2.9443 -1.3544 40 1 9.3722 0.4858 -0.1697 41 1 1.8766 -2.1241 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090193885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:39 Heat of formation + Delta-G solvation = -34.683853 kcal Electronic energy + Delta-G solvation = -23726.902753 eV Core-core repulsion = 20221.390965 eV Total energy + Delta-G solvation = -3505.511787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.10715 -40.71314 -39.19206 -36.47250 -35.63350 -34.05024 -33.44057 -31.19076 -30.70403 -30.02295 -27.75163 -26.64895 -24.36567 -23.73659 -22.84521 -21.16738 -20.96410 -20.39732 -19.19250 -18.68253 -17.44614 -17.05814 -16.81511 -16.61001 -16.29506 -15.67884 -15.59460 -15.36169 -15.23424 -14.96204 -14.56561 -14.31712 -13.89403 -13.77044 -13.63427 -13.26768 -13.15864 -13.01036 -12.91630 -12.75743 -12.60065 -12.38376 -12.22569 -11.99765 -11.81249 -11.43245 -10.92855 -10.71414 -10.57293 -10.00727 -9.47644 -9.25812 -8.66203 -7.86324 -5.30793 0.80312 1.49020 1.50685 1.55703 1.61126 1.94587 2.47463 2.53239 2.62815 3.26893 3.42414 3.66194 3.87734 4.01555 4.03374 4.06570 4.11582 4.35051 4.37037 4.42438 4.49859 4.61634 4.62808 4.76659 4.77283 4.89532 4.98057 5.05130 5.07861 5.17087 5.20344 5.44316 5.56663 5.59735 5.66280 5.79301 6.09756 6.38393 6.39195 6.75966 6.93875 7.15891 7.39979 7.83419 8.37486 9.20420 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.040843 B = 0.003223 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.384232 B = 8686.539860 C = 8946.803019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.007 4.007 4 C -0.187 4.187 5 C -0.266 4.266 6 C 0.581 3.419 7 O -0.602 6.602 8 N -0.704 5.704 9 C 0.169 3.831 10 H 0.070 0.930 11 C -0.118 4.118 12 C 0.146 3.854 13 N -0.598 5.598 14 C -0.255 4.255 15 H 0.062 0.938 16 C -0.048 4.048 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.271 1.271 22 C 0.151 3.849 23 C 0.092 3.908 24 H 0.067 0.933 25 O -0.560 6.560 26 C 0.067 3.933 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.204 0.796 31 H 0.154 0.846 32 H 0.411 0.589 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.011 0.989 37 H 0.251 0.749 38 H 0.074 0.926 39 H 0.004 0.996 40 H 0.386 0.614 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.057 11.711 -0.299 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.134 4.134 4 C -0.210 4.210 5 C -0.277 4.277 6 C 0.372 3.628 7 O -0.485 6.485 8 N -0.353 5.353 9 C 0.064 3.936 10 H 0.088 0.912 11 C -0.159 4.159 12 C 0.019 3.981 13 N -0.321 5.321 14 C -0.385 4.385 15 H 0.079 0.921 16 C -0.243 4.243 17 N -0.583 5.583 18 Si 0.797 3.203 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.196 1.196 22 C 0.024 3.976 23 C 0.031 3.969 24 H 0.085 0.915 25 O -0.367 6.367 26 C -0.070 4.070 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.221 0.779 31 H 0.172 0.828 32 H 0.248 0.752 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.022 0.978 40 H 0.235 0.765 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -23.896 10.692 -0.054 26.179 hybrid contribution 1.810 0.283 -0.215 1.845 sum -22.086 10.975 -0.269 24.664 Atomic orbital electron populations 1.22455 0.74136 1.06345 1.04924 1.43932 1.08394 1.05053 1.54378 1.22294 0.89834 0.92634 1.08595 1.22282 0.97876 0.92074 1.08789 1.20379 0.92230 0.94517 1.20526 1.17945 0.83358 0.86938 0.74523 1.90715 1.87252 1.16636 1.53942 1.45751 1.04358 1.10801 1.74432 1.20671 0.83412 0.92551 0.96930 0.91167 1.22068 0.97411 0.99897 0.96489 1.20963 0.87999 0.92948 0.96147 1.44096 1.07603 1.65413 1.14983 1.19427 0.83894 1.43595 0.91629 0.92076 1.25734 1.00473 1.01075 0.96979 1.70173 1.29052 1.50510 1.08517 0.85261 0.79586 0.78088 0.77355 1.21609 1.21573 1.19639 1.21313 0.95601 0.94648 0.85989 1.22484 0.94252 0.87106 0.93046 0.91537 1.86331 1.55391 1.39035 1.55923 1.21893 0.89709 0.92805 1.02587 0.89361 0.88659 0.87297 0.77949 0.82798 0.75237 0.91814 0.92722 0.92502 0.97108 0.93981 0.90789 0.97839 0.76515 0.80490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 11.03 127.77 1.41 1.72 16 2 N -0.44 -6.56 3.09 -547.89 -1.69 -8.25 16 3 C -0.01 -0.10 11.34 83.12 0.94 0.84 16 4 C -0.19 -3.87 10.56 23.62 0.25 -3.62 16 5 C -0.27 -7.28 6.29 -19.04 -0.12 -7.40 16 6 C 0.58 20.29 7.77 86.62 0.67 20.96 16 7 O -0.60 -25.41 16.57 -4.11 -0.07 -25.48 16 8 N -0.70 -23.28 5.05 -445.83 -2.25 -25.53 16 9 C 0.17 6.52 2.20 45.02 0.10 6.62 16 10 H 0.07 2.99 7.58 -2.39 -0.02 2.98 16 11 C -0.12 -4.83 5.51 30.67 0.17 -4.66 16 12 C 0.15 6.73 6.52 86.36 0.56 7.29 16 13 N -0.60 -30.87 2.93 -699.10 -2.05 -32.92 16 14 C -0.26 -14.22 9.58 84.03 0.81 -13.41 16 15 H 0.06 3.38 7.88 -2.91 -0.02 3.36 16 16 C -0.05 -2.64 4.92 84.86 0.42 -2.22 16 17 N -0.94 -54.66 11.20 21.65 0.24 -54.41 16 18 Si 0.97 44.67 29.59 68.60 2.03 46.70 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.15 7.24 4.95 86.36 0.43 7.66 16 23 C 0.09 3.49 3.38 30.67 0.10 3.60 16 24 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 25 O -0.56 -19.89 12.08 -148.98 -1.80 -21.69 16 26 C 0.07 1.49 11.12 83.91 0.93 2.42 16 27 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 28 H 0.09 0.33 8.13 -2.39 -0.02 0.31 16 29 H 0.11 0.08 8.13 -2.39 -0.02 0.06 16 30 H 0.20 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.15 2.76 7.69 -2.91 -0.02 2.73 16 32 H 0.41 11.84 7.38 -92.71 -0.68 11.16 16 33 H 0.06 2.67 7.61 -2.39 -0.02 2.65 16 34 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.56 7.93 -2.39 -0.02 2.54 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 38 H 0.07 3.84 6.06 -2.39 -0.01 3.83 16 39 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.39 11.72 9.08 -74.05 -0.67 11.04 16 41 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -74.77 339.61 0.78 -73.99 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.30 Total: 27.80 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 6.67 Total: 19.80 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -5.75 Total: -121.12 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -1.87 Total: -47.17 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -74.77 0.78 -73.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090193885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.309 kcal (2) G-P(sol) polarization free energy of solvation -74.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds