Wall clock time and date at job start Tue Mar 31 2020 03:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36449 * 124.84953 * 2 1 4 4 C 1.34486 * 108.85773 * 180.02562 * 3 2 1 5 5 C 1.46687 * 106.33086 * 359.97438 * 4 3 2 6 6 C 1.47264 * 126.93969 * 179.97438 * 5 4 3 7 7 O 1.21624 * 119.99892 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00081 * 0.02871 * 6 5 4 9 9 C 1.46501 * 119.99945 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46411 * 324.97730 * 9 8 6 11 11 C 1.53047 * 109.45622 * 84.93449 * 9 8 6 12 12 C 1.53194 * 109.31054 * 181.38635 * 11 9 8 13 13 N 1.46929 * 108.77546 * 305.36236 * 12 11 9 14 14 C 1.36938 * 120.63276 * 233.58792 * 13 12 11 15 15 H 1.07998 * 120.00288 * 152.80252 * 14 13 12 16 16 C 1.38816 * 119.99673 * 332.79951 * 14 13 12 17 17 N 1.31620 * 119.99431 * 159.75245 * 16 14 13 18 18 Si 1.86794 * 120.00346 * 339.75262 * 16 14 13 19 19 H 1.48504 * 109.47002 * 94.88959 * 18 16 14 20 20 H 1.48499 * 109.47329 * 214.89470 * 18 16 14 21 21 H 1.48501 * 109.47113 * 334.89735 * 18 16 14 22 22 C 1.46932 * 118.73820 * 53.61318 * 13 12 11 23 23 C 1.53039 * 109.46088 * 204.99808 * 9 8 6 24 24 H 1.08996 * 109.50409 * 298.60092 * 23 9 8 25 25 O 1.42908 * 109.49765 * 58.66892 * 23 9 8 26 26 C 1.34658 * 124.85651 * 180.30231 * 2 1 3 27 27 H 1.08998 * 109.46578 * 89.98137 * 1 2 3 28 28 H 1.09002 * 109.46877 * 209.97948 * 1 2 3 29 29 H 1.08993 * 109.46950 * 329.97991 * 1 2 3 30 30 H 1.08003 * 125.57256 * 0.03584 * 3 2 1 31 31 H 1.08005 * 126.83549 * 180.02562 * 4 3 2 32 32 H 0.96999 * 120.00236 * 0.02562 * 8 6 5 33 33 H 1.08995 * 109.49655 * 301.33347 * 11 9 8 34 34 H 1.08998 * 109.49948 * 61.43341 * 11 9 8 35 35 H 1.09000 * 109.58941 * 65.14916 * 12 11 9 36 36 H 1.08993 * 109.58472 * 185.57762 * 12 11 9 37 37 H 0.97003 * 119.99784 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.58621 * 186.60434 * 22 13 12 39 39 H 1.08997 * 109.58972 * 66.17756 * 22 13 12 40 40 H 0.96699 * 114.00042 * 179.97438 * 25 23 9 41 41 H 1.08004 * 125.80059 * 0.03131 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7493 -0.0006 5 6 3.5462 -0.7176 -0.0003 6 6 4.7285 -1.5956 -0.0013 7 8 4.5886 -2.8038 -0.0014 8 7 5.9654 -1.0604 -0.0019 9 6 7.1415 -1.9339 -0.0023 10 1 6.9315 -2.8260 0.5877 11 6 7.4741 -2.3404 -1.4398 12 6 8.6830 -3.2813 -1.4334 13 7 9.7882 -2.6263 -0.7205 14 6 11.0176 -2.4946 -1.3092 15 1 11.6690 -1.6820 -1.0234 16 6 11.4265 -3.4057 -2.2734 17 7 12.3881 -3.0873 -3.1138 18 14 10.6121 -5.0835 -2.3781 19 1 9.5212 -5.0423 -3.3849 20 1 11.6189 -6.0983 -2.7804 21 1 10.0485 -5.4438 -1.0523 22 6 9.5495 -2.1158 0.6365 23 6 8.3308 -1.1879 0.6068 24 1 8.5569 -0.3089 0.0032 25 8 8.0080 -0.7820 1.9384 26 6 2.2346 -1.1050 -0.0058 27 1 -0.3632 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 1.8828 2.1374 0.0005 31 1 4.3981 1.4019 -0.0003 32 1 6.0769 -0.0968 -0.0014 33 1 6.6181 -2.8511 -1.8808 34 1 7.7085 -1.4509 -2.0245 35 1 8.4207 -4.2099 -0.9265 36 1 8.9852 -3.4949 -2.4586 37 1 12.6736 -3.7238 -3.7878 38 1 10.4234 -1.5604 0.9769 39 1 9.3578 -2.9493 1.3121 40 1 8.7183 -0.3026 2.3866 41 1 1.8769 -2.1240 -0.0117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090193888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:47 Heat of formation + Delta-G solvation = -33.359891 kcal Electronic energy + Delta-G solvation = -23698.411143 eV Core-core repulsion = 20192.956767 eV Total energy + Delta-G solvation = -3505.454376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.11948 -40.80406 -39.27869 -37.11673 -35.70954 -34.10546 -33.57458 -31.86241 -30.72942 -30.04646 -27.79990 -26.59385 -24.31103 -24.15210 -22.93921 -21.50607 -21.01315 -20.46026 -19.09868 -18.67246 -18.04564 -17.60187 -16.89294 -16.54976 -16.31674 -16.19389 -15.71787 -15.34111 -15.18647 -14.90515 -14.68387 -14.43060 -14.02325 -13.90662 -13.82621 -13.66462 -13.27258 -13.19061 -13.05614 -12.93776 -12.91396 -12.65951 -12.14434 -11.88200 -11.63501 -11.44918 -11.16124 -10.98026 -10.66900 -10.07510 -9.48666 -9.26768 -9.01910 -8.19261 -5.52537 0.79253 1.29068 1.40063 1.48389 1.55448 1.92701 2.38902 2.43162 2.61805 2.92291 3.12760 3.36123 3.79638 3.99201 4.01943 4.03436 4.10021 4.10551 4.24311 4.31519 4.34060 4.48507 4.56327 4.61330 4.72128 4.76055 4.79898 4.85692 4.90555 5.02546 5.04368 5.15493 5.26291 5.53369 5.78786 5.81401 6.08702 6.09997 6.37899 6.71596 6.79702 6.93146 7.38269 7.55802 7.96359 8.99811 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027569 B = 0.003604 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.394900 B = 7767.395823 C = 8234.022939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.008 4.008 4 C -0.185 4.185 5 C -0.265 4.265 6 C 0.583 3.417 7 O -0.603 6.603 8 N -0.700 5.700 9 C 0.169 3.831 10 H 0.063 0.937 11 C -0.128 4.128 12 C 0.124 3.876 13 N -0.613 5.613 14 C -0.248 4.248 15 H 0.066 0.934 16 C -0.027 4.027 17 N -0.951 5.951 18 Si 0.934 3.066 19 H -0.279 1.279 20 H -0.308 1.308 21 H -0.265 1.265 22 C 0.120 3.880 23 C 0.101 3.899 24 H 0.071 0.929 25 O -0.568 6.568 26 C 0.065 3.935 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.204 0.796 31 H 0.157 0.843 32 H 0.410 0.590 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.028 0.972 36 H 0.057 0.943 37 H 0.263 0.737 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.397 0.603 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.855 11.829 8.357 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.134 4.134 4 C -0.208 4.208 5 C -0.276 4.276 6 C 0.374 3.626 7 O -0.487 6.487 8 N -0.349 5.349 9 C 0.063 3.937 10 H 0.081 0.919 11 C -0.168 4.168 12 C -0.001 4.001 13 N -0.339 5.339 14 C -0.377 4.377 15 H 0.084 0.916 16 C -0.222 4.222 17 N -0.597 5.597 18 Si 0.764 3.236 19 H -0.206 1.206 20 H -0.236 1.236 21 H -0.189 1.189 22 C -0.006 4.006 23 C 0.040 3.960 24 H 0.088 0.912 25 O -0.375 6.375 26 C -0.072 4.072 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.221 0.779 31 H 0.175 0.825 32 H 0.247 0.753 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.247 0.753 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -25.784 10.719 8.138 29.085 hybrid contribution 0.948 -0.610 -0.338 1.177 sum -24.836 10.108 7.800 27.926 Atomic orbital electron populations 1.22451 0.74192 1.06351 1.04876 1.43929 1.08382 1.05085 1.54383 1.22313 0.89903 0.92616 1.08615 1.22284 0.97891 0.91948 1.08685 1.20368 0.92158 0.94598 1.20444 1.17912 0.83398 0.86891 0.74374 1.90718 1.87259 1.16767 1.53926 1.45591 1.04329 1.10516 1.74505 1.20631 0.84221 0.93494 0.95343 0.91870 1.22238 0.97609 1.00516 0.96443 1.21338 0.87985 0.94495 0.96325 1.44411 1.07375 1.68922 1.13209 1.18897 0.93380 1.07606 1.17805 0.91623 1.25788 0.97632 1.00872 0.97955 1.69927 1.33750 1.36429 1.19559 0.86097 0.76853 0.82130 0.78517 1.20614 1.23625 1.18949 1.21751 0.96999 0.96360 0.85460 1.22288 0.93080 0.96712 0.83955 0.91151 1.86475 1.45475 1.78358 1.27233 1.21882 0.89822 0.92780 1.02736 0.89468 0.88709 0.87212 0.77933 0.82498 0.75325 0.91567 0.90900 0.95402 0.92453 0.92831 0.90183 0.94908 0.75320 0.80684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 11.03 127.77 1.41 1.71 16 2 N -0.44 -6.40 3.09 -547.90 -1.69 -8.09 16 3 C -0.01 -0.11 11.34 83.12 0.94 0.84 16 4 C -0.18 -3.60 10.56 23.62 0.25 -3.35 16 5 C -0.27 -7.04 6.29 -19.04 -0.12 -7.16 16 6 C 0.58 19.77 7.77 86.62 0.67 20.44 16 7 O -0.60 -25.17 16.58 -4.11 -0.07 -25.24 16 8 N -0.70 -21.56 4.91 -445.82 -2.19 -23.75 16 9 C 0.17 5.97 2.12 45.02 0.10 6.06 16 10 H 0.06 2.59 7.58 -2.39 -0.02 2.57 16 11 C -0.13 -4.92 5.65 30.67 0.17 -4.75 16 12 C 0.12 5.63 4.19 86.36 0.36 5.99 16 13 N -0.61 -28.97 2.77 -699.07 -1.94 -30.91 16 14 C -0.25 -13.81 10.04 84.03 0.84 -12.97 16 15 H 0.07 3.88 8.05 -2.91 -0.02 3.86 16 16 C -0.03 -1.58 5.24 84.86 0.44 -1.14 16 17 N -0.95 -59.39 13.97 21.65 0.30 -59.09 16 18 Si 0.93 47.70 24.35 68.60 1.67 49.37 16 19 H -0.28 -13.73 6.70 99.48 0.67 -13.07 16 20 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 21 H -0.26 -13.22 6.45 99.48 0.64 -12.58 16 22 C 0.12 4.56 6.14 86.36 0.53 5.09 16 23 C 0.10 3.20 3.14 30.67 0.10 3.30 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 O -0.57 -15.31 13.16 -148.98 -1.96 -17.27 16 26 C 0.07 1.42 11.12 83.91 0.93 2.35 16 27 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.09 0.32 8.13 -2.39 -0.02 0.30 16 29 H 0.11 0.05 8.13 -2.39 -0.02 0.03 16 30 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.16 2.49 7.70 -2.91 -0.02 2.47 16 32 H 0.41 10.36 7.72 -92.71 -0.72 9.65 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.03 1.29 6.98 -2.39 -0.02 1.27 16 36 H 0.06 2.82 4.50 -2.39 -0.01 2.81 16 37 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.08 2.84 7.93 -2.39 -0.02 2.82 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.40 7.00 9.08 -74.06 -0.67 6.33 16 41 H 0.18 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -79.08 334.67 0.32 -78.76 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.44 Total: 19.81 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 6.63 Total: 16.41 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -5.52 Total: -121.84 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -2.03 Total: -42.51 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.67 Total: 49.37 kcal Total: -79.08 0.32 -78.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090193888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.400 kcal (2) G-P(sol) polarization free energy of solvation -79.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds