Wall clock time and date at job start Tue Mar 31 2020 03:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36447 * 124.84964 * 2 1 4 4 C 1.34489 * 108.85627 * 179.73307 * 3 2 1 5 5 C 1.46683 * 106.33028 * 0.43060 * 4 3 2 6 6 C 1.47266 * 126.94363 * 179.82971 * 5 4 3 7 7 O 1.21623 * 120.00163 * 179.68926 * 6 5 4 8 8 N 1.34773 * 119.99477 * 359.68548 * 6 5 4 9 9 C 1.46501 * 119.99847 * 179.72173 * 8 6 5 10 10 H 1.09003 * 109.46036 * 35.03382 * 9 8 6 11 11 C 1.53037 * 109.46398 * 275.07499 * 9 8 6 12 12 C 1.53195 * 109.31609 * 178.61612 * 11 9 8 13 13 N 1.46921 * 108.77708 * 54.62994 * 12 11 9 14 14 C 1.36935 * 120.63058 * 126.41798 * 13 12 11 15 15 H 1.08001 * 120.00038 * 332.60512 * 14 13 12 16 16 C 1.38809 * 120.00202 * 152.60873 * 14 13 12 17 17 N 1.31620 * 120.00203 * 159.34123 * 16 14 13 18 18 Si 1.86799 * 119.99988 * 339.34144 * 16 14 13 19 19 H 1.48498 * 109.47007 * 92.94571 * 18 16 14 20 20 H 1.48498 * 109.47333 * 212.94575 * 18 16 14 21 21 H 1.48496 * 109.46992 * 332.94814 * 18 16 14 22 22 C 1.46930 * 118.74115 * 306.39523 * 13 12 11 23 23 C 1.53042 * 109.46077 * 155.00219 * 9 8 6 24 24 H 1.09002 * 109.49545 * 61.44123 * 23 9 8 25 25 O 1.42897 * 109.50131 * 301.34329 * 23 9 8 26 26 C 1.34651 * 124.84986 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46837 * 269.97828 * 1 2 3 28 28 H 1.08997 * 109.47209 * 29.97368 * 1 2 3 29 29 H 1.08999 * 109.47026 * 149.98177 * 1 2 3 30 30 H 1.08005 * 125.56981 * 0.02562 * 3 2 1 31 31 H 1.07994 * 126.83301 * 180.26495 * 4 3 2 32 32 H 0.96998 * 120.00467 * 0.02562 * 8 6 5 33 33 H 1.09008 * 109.49684 * 298.56416 * 11 9 8 34 34 H 1.09001 * 109.49948 * 58.65908 * 11 9 8 35 35 H 1.09008 * 109.57867 * 294.84521 * 12 11 9 36 36 H 1.08990 * 109.58890 * 174.42196 * 12 11 9 37 37 H 0.96999 * 120.00183 * 179.97438 * 17 16 14 38 38 H 1.08991 * 109.58850 * 293.82448 * 22 13 12 39 39 H 1.09001 * 109.70184 * 173.46199 * 22 13 12 40 40 H 0.96700 * 114.00186 * 179.97438 * 25 23 9 41 41 H 1.07995 * 125.80544 * 359.95720 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2448 1.1198 0.0000 4 6 3.5376 0.7492 0.0059 5 6 3.5462 -0.7176 -0.0007 6 6 4.7284 -1.5957 -0.0012 7 8 4.5886 -2.8039 -0.0014 8 7 5.9653 -1.0605 -0.0016 9 6 7.1414 -1.9340 0.0040 10 1 6.9321 -2.8286 -0.5824 11 6 7.4724 -2.3343 1.4435 12 6 8.6814 -3.2751 1.4426 13 7 9.7874 -2.6233 0.7281 14 6 11.0160 -2.4891 1.3176 15 1 11.0959 -2.4358 2.3933 16 6 12.1589 -2.4215 0.5326 17 7 13.2632 -1.8985 1.0217 18 14 12.1294 -3.0727 -1.2180 19 1 11.7987 -1.9667 -2.1520 20 1 13.4627 -3.6289 -1.5617 21 1 11.1034 -4.1402 -1.3318 22 6 9.5502 -2.1186 -0.6313 23 6 8.3315 -1.1907 -0.6071 24 1 8.5572 -0.3094 -0.0067 25 8 8.0102 -0.7905 -1.9407 26 6 2.2345 -1.1050 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 1.8828 2.1374 0.0004 31 1 4.3981 1.4018 0.0115 32 1 6.0769 -0.0969 -0.0011 33 1 7.7062 -1.4421 2.0247 34 1 6.6159 -2.8430 1.8859 35 1 8.4195 -4.2060 0.9395 36 1 8.9825 -3.4843 2.4690 37 1 14.0619 -1.8516 0.4733 38 1 9.3592 -2.9551 -1.3035 39 1 10.4240 -1.5653 -0.9755 40 1 8.7207 -0.3125 -2.3899 41 1 1.8768 -2.1240 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090193889.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:51 Heat of formation + Delta-G solvation = -5.539680 kcal Electronic energy + Delta-G solvation = -23719.915969 eV Core-core repulsion = 20215.667968 eV Total energy + Delta-G solvation = -3504.248001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.33911 -39.42928 -37.83397 -35.44483 -34.28162 -33.06104 -32.03497 -30.13880 -29.32606 -29.04087 -26.93643 -25.00580 -23.12318 -22.43566 -21.44569 -20.27666 -19.81607 -19.35892 -18.01841 -16.93160 -16.78805 -16.05332 -15.71648 -15.65297 -14.89063 -14.42893 -14.29624 -14.27604 -13.75182 -13.48059 -13.29351 -13.27521 -12.80425 -12.78516 -12.59778 -12.38302 -12.22571 -12.13108 -12.03632 -11.32964 -10.93763 -10.80388 -10.47683 -10.28938 -9.85717 -9.64258 -9.57320 -9.43577 -8.83393 -8.66155 -8.63489 -8.40298 -7.03420 -5.98738 -3.35364 1.77346 2.29336 2.59694 3.27553 3.47258 3.51994 3.62310 3.76829 4.37610 4.42252 4.50044 4.70448 4.72849 4.82554 4.97222 4.98063 5.19115 5.31125 5.34113 5.36080 5.54229 5.68784 5.75832 5.84908 5.89431 5.93368 6.14345 6.34777 6.37955 6.47626 6.56288 6.59335 6.64075 6.82464 6.88367 6.93508 7.02402 7.84343 7.91857 8.01072 8.29397 8.62658 8.89040 9.67284 10.04093 11.16939 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.035902 B = 0.003432 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.723488 B = 8157.701693 C = 8337.241762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.021 4.021 4 C -0.167 4.167 5 C -0.227 4.227 6 C 0.589 3.411 7 O -0.559 6.559 8 N -0.710 5.710 9 C 0.163 3.837 10 H 0.088 0.912 11 C -0.141 4.141 12 C 0.148 3.852 13 N -0.602 5.602 14 C -0.261 4.261 15 H 0.089 0.911 16 C 0.023 3.977 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.289 1.289 20 H -0.302 1.302 21 H -0.269 1.269 22 C 0.102 3.898 23 C 0.080 3.920 24 H 0.062 0.938 25 O -0.570 6.570 26 C 0.069 3.931 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.165 0.835 31 H 0.145 0.855 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.263 0.737 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.376 0.624 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.920 7.461 -2.849 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.147 4.147 4 C -0.191 4.191 5 C -0.237 4.237 6 C 0.378 3.622 7 O -0.439 6.439 8 N -0.359 5.359 9 C 0.059 3.941 10 H 0.106 0.894 11 C -0.181 4.181 12 C 0.022 3.978 13 N -0.327 5.327 14 C -0.389 4.389 15 H 0.106 0.894 16 C -0.176 4.176 17 N -0.549 5.549 18 Si 0.712 3.288 19 H -0.217 1.217 20 H -0.230 1.230 21 H -0.194 1.194 22 C -0.025 4.025 23 C 0.019 3.981 24 H 0.080 0.920 25 O -0.374 6.374 26 C -0.066 4.066 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.183 0.817 31 H 0.163 0.837 32 H 0.231 0.769 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.222 0.778 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -24.748 6.363 -2.710 25.696 hybrid contribution 0.726 0.547 -1.163 1.476 sum -24.022 6.910 -3.874 25.294 Atomic orbital electron populations 1.22098 0.77035 1.04575 1.03475 1.43601 1.06679 1.05964 1.56387 1.21718 0.90597 0.91203 1.11230 1.22071 0.96179 0.93358 1.07504 1.20450 0.92685 0.93366 1.17213 1.17346 0.82406 0.86993 0.75473 1.90750 1.86639 1.14716 1.51755 1.45790 1.05160 1.10196 1.74744 1.20903 0.82762 0.93646 0.96778 0.89392 1.22425 0.99477 1.01148 0.95074 1.20974 0.86650 0.92929 0.97256 1.44333 1.09324 1.65846 1.13230 1.18945 0.81220 1.45502 0.93237 0.89376 1.25298 0.95175 0.99263 0.97858 1.69834 1.02375 1.45170 1.37535 0.86985 0.76306 0.79858 0.85679 1.21733 1.23007 1.19408 1.22019 0.95940 0.95998 0.88542 1.22781 0.95019 0.97512 0.82768 0.91991 1.86462 1.44470 1.78330 1.28148 1.21775 0.89866 0.91680 1.03230 0.90712 0.89681 0.89648 0.81725 0.83703 0.76874 0.91582 0.91311 0.95349 0.91191 0.92701 0.94626 0.90425 0.77772 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.04 59.85 0.66 0.95 16 2 N -0.45 -3.88 3.09 -124.53 -0.38 -4.26 16 3 C -0.02 -0.19 11.34 -16.82 -0.19 -0.38 16 4 C -0.17 -1.82 10.56 -37.50 -0.40 -2.22 16 5 C -0.23 -3.09 6.29 -103.35 -0.65 -3.74 16 6 C 0.59 9.87 7.77 -12.59 -0.10 9.78 16 7 O -0.56 -11.17 16.57 5.26 0.09 -11.08 16 8 N -0.71 -11.24 4.91 -54.89 -0.27 -11.51 16 9 C 0.16 2.95 2.12 -67.89 -0.14 2.81 16 10 H 0.09 1.80 7.57 -51.93 -0.39 1.40 16 11 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16 12 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 13 N -0.60 -14.30 2.77 -172.32 -0.48 -14.78 16 14 C -0.26 -7.21 10.03 -15.06 -0.15 -7.36 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 16 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 17 N -0.91 -27.44 13.97 55.49 0.78 -26.67 16 18 Si 0.88 22.25 24.35 -169.99 -4.14 18.11 16 19 H -0.29 -6.92 6.62 56.52 0.37 -6.54 16 20 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 21 H -0.27 -6.81 6.63 56.52 0.37 -6.43 16 22 C 0.10 2.22 3.83 -3.71 -0.01 2.21 16 23 C 0.08 1.46 3.14 -26.61 -0.08 1.38 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 O -0.57 -9.46 13.16 -35.23 -0.46 -9.92 16 26 C 0.07 0.79 11.12 -16.84 -0.19 0.60 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.21 8.13 -51.93 -0.42 -0.21 16 29 H 0.08 0.27 8.13 -51.93 -0.42 -0.16 16 30 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.15 1.34 7.69 -52.49 -0.40 0.94 16 32 H 0.40 5.43 7.73 -40.82 -0.32 5.11 16 33 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.04 0.81 7.07 -51.93 -0.37 0.44 16 39 H 0.08 1.79 4.50 -51.93 -0.23 1.56 16 40 H 0.38 4.89 9.08 45.56 0.41 5.30 16 41 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -35.27 334.85 -6.47 -41.74 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.13 Total: 8.41 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.52 Total: 4.92 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.36 Total: -57.22 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.38 Total: -21.00 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.27 -6.47 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090193889.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.203 kcal (2) G-P(sol) polarization free energy of solvation -35.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds