Wall clock time and date at job start Tue Mar 31 2020 03:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36447 * 124.84964 * 2 1 4 4 C 1.34489 * 108.85627 * 179.73307 * 3 2 1 5 5 C 1.46683 * 106.33028 * 0.43060 * 4 3 2 6 6 C 1.47266 * 126.94363 * 179.82971 * 5 4 3 7 7 O 1.21623 * 120.00163 * 179.68926 * 6 5 4 8 8 N 1.34773 * 119.99477 * 359.68548 * 6 5 4 9 9 C 1.46501 * 119.99847 * 179.72173 * 8 6 5 10 10 H 1.09003 * 109.46036 * 35.03382 * 9 8 6 11 11 C 1.53037 * 109.46398 * 275.07499 * 9 8 6 12 12 C 1.53195 * 109.31609 * 178.61612 * 11 9 8 13 13 N 1.46921 * 108.77708 * 54.62994 * 12 11 9 14 14 C 1.36935 * 120.63058 * 126.41798 * 13 12 11 15 15 H 1.08001 * 120.00038 * 332.60512 * 14 13 12 16 16 C 1.38809 * 120.00202 * 152.60873 * 14 13 12 17 17 N 1.31620 * 120.00203 * 159.34123 * 16 14 13 18 18 Si 1.86799 * 119.99988 * 339.34144 * 16 14 13 19 19 H 1.48498 * 109.47007 * 92.94571 * 18 16 14 20 20 H 1.48498 * 109.47333 * 212.94575 * 18 16 14 21 21 H 1.48496 * 109.46992 * 332.94814 * 18 16 14 22 22 C 1.46930 * 118.74115 * 306.39523 * 13 12 11 23 23 C 1.53042 * 109.46077 * 155.00219 * 9 8 6 24 24 H 1.09002 * 109.49545 * 61.44123 * 23 9 8 25 25 O 1.42897 * 109.50131 * 301.34329 * 23 9 8 26 26 C 1.34651 * 124.84986 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46837 * 269.97828 * 1 2 3 28 28 H 1.08997 * 109.47209 * 29.97368 * 1 2 3 29 29 H 1.08999 * 109.47026 * 149.98177 * 1 2 3 30 30 H 1.08005 * 125.56981 * 0.02562 * 3 2 1 31 31 H 1.07994 * 126.83301 * 180.26495 * 4 3 2 32 32 H 0.96998 * 120.00467 * 0.02562 * 8 6 5 33 33 H 1.09008 * 109.49684 * 298.56416 * 11 9 8 34 34 H 1.09001 * 109.49948 * 58.65908 * 11 9 8 35 35 H 1.09008 * 109.57867 * 294.84521 * 12 11 9 36 36 H 1.08990 * 109.58890 * 174.42196 * 12 11 9 37 37 H 0.96999 * 120.00183 * 179.97438 * 17 16 14 38 38 H 1.08991 * 109.58850 * 293.82448 * 22 13 12 39 39 H 1.09001 * 109.70184 * 173.46199 * 22 13 12 40 40 H 0.96700 * 114.00186 * 179.97438 * 25 23 9 41 41 H 1.07995 * 125.80544 * 359.95720 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2448 1.1198 0.0000 4 6 3.5376 0.7492 0.0059 5 6 3.5462 -0.7176 -0.0007 6 6 4.7284 -1.5957 -0.0012 7 8 4.5886 -2.8039 -0.0014 8 7 5.9653 -1.0605 -0.0016 9 6 7.1414 -1.9340 0.0040 10 1 6.9321 -2.8286 -0.5824 11 6 7.4724 -2.3343 1.4435 12 6 8.6814 -3.2751 1.4426 13 7 9.7874 -2.6233 0.7281 14 6 11.0160 -2.4891 1.3176 15 1 11.0959 -2.4358 2.3933 16 6 12.1589 -2.4215 0.5326 17 7 13.2632 -1.8985 1.0217 18 14 12.1294 -3.0727 -1.2180 19 1 11.7987 -1.9667 -2.1520 20 1 13.4627 -3.6289 -1.5617 21 1 11.1034 -4.1402 -1.3318 22 6 9.5502 -2.1186 -0.6313 23 6 8.3315 -1.1907 -0.6071 24 1 8.5572 -0.3094 -0.0067 25 8 8.0102 -0.7905 -1.9407 26 6 2.2345 -1.1050 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 1.8828 2.1374 0.0004 31 1 4.3981 1.4018 0.0115 32 1 6.0769 -0.0969 -0.0011 33 1 7.7062 -1.4421 2.0247 34 1 6.6159 -2.8430 1.8859 35 1 8.4195 -4.2060 0.9395 36 1 8.9825 -3.4843 2.4690 37 1 14.0619 -1.8516 0.4733 38 1 9.3592 -2.9551 -1.3035 39 1 10.4240 -1.5653 -0.9755 40 1 8.7207 -0.3125 -2.3899 41 1 1.8768 -2.1240 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090193889.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:49 Heat of formation + Delta-G solvation = -33.268758 kcal Electronic energy + Delta-G solvation = -23721.118392 eV Core-core repulsion = 20215.667968 eV Total energy + Delta-G solvation = -3505.450424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.11404 -40.80995 -39.29954 -37.03407 -35.78037 -34.17122 -33.56450 -31.79719 -30.72172 -30.04079 -27.78856 -26.59778 -24.73388 -23.75693 -22.90977 -21.39074 -21.01501 -20.51399 -19.14787 -18.60143 -18.29787 -17.61023 -16.81540 -16.54062 -16.30671 -16.11003 -15.64594 -15.26802 -15.13860 -14.98785 -14.67117 -14.55323 -14.11311 -13.97718 -13.87722 -13.67908 -13.26725 -13.08354 -13.02892 -12.91947 -12.69173 -12.48608 -12.35633 -12.00273 -11.72371 -11.40358 -11.11585 -10.98909 -10.65529 -10.06613 -9.48338 -9.26193 -9.02256 -8.18801 -5.52524 0.80257 1.26037 1.41776 1.50314 1.55570 1.93210 2.38183 2.43294 2.62811 2.89118 3.14361 3.33806 3.78231 3.98812 4.02284 4.03786 4.07419 4.10818 4.24926 4.33483 4.36321 4.49186 4.57433 4.62022 4.69473 4.76685 4.79156 4.91154 4.92150 5.00871 5.04717 5.16281 5.31552 5.54032 5.79143 5.81980 6.09275 6.10854 6.38253 6.71531 6.73259 6.87560 7.38599 7.55753 7.96239 9.00535 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.035902 B = 0.003432 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.723488 B = 8157.701693 C = 8337.241762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.008 4.008 4 C -0.186 4.186 5 C -0.266 4.266 6 C 0.585 3.415 7 O -0.601 6.601 8 N -0.702 5.702 9 C 0.169 3.831 10 H 0.064 0.936 11 C -0.126 4.126 12 C 0.145 3.855 13 N -0.613 5.613 14 C -0.251 4.251 15 H 0.060 0.940 16 C -0.028 4.028 17 N -0.951 5.951 18 Si 0.940 3.060 19 H -0.266 1.266 20 H -0.310 1.310 21 H -0.271 1.271 22 C 0.098 3.902 23 C 0.098 3.902 24 H 0.070 0.930 25 O -0.569 6.569 26 C 0.066 3.934 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.203 0.797 31 H 0.156 0.844 32 H 0.409 0.591 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.263 0.737 38 H 0.031 0.969 39 H 0.067 0.933 40 H 0.393 0.607 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.780 9.164 -3.940 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.135 4.135 4 C -0.209 4.209 5 C -0.276 4.276 6 C 0.376 3.624 7 O -0.485 6.485 8 N -0.351 5.351 9 C 0.063 3.937 10 H 0.082 0.918 11 C -0.166 4.166 12 C 0.020 3.980 13 N -0.339 5.339 14 C -0.380 4.380 15 H 0.078 0.922 16 C -0.224 4.224 17 N -0.596 5.596 18 Si 0.769 3.231 19 H -0.192 1.192 20 H -0.238 1.238 21 H -0.196 1.196 22 C -0.028 4.028 23 C 0.037 3.963 24 H 0.088 0.912 25 O -0.376 6.376 26 C -0.071 4.071 27 H 0.106 0.894 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.220 0.780 31 H 0.173 0.827 32 H 0.245 0.755 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.243 0.757 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -27.665 8.118 -3.825 29.084 hybrid contribution 1.474 0.039 -0.776 1.666 sum -26.192 8.157 -4.601 27.816 Atomic orbital electron populations 1.22453 0.74178 1.06325 1.04915 1.43928 1.08387 1.05084 1.54375 1.22299 0.89906 0.92620 1.08660 1.22278 0.97853 0.92066 1.08724 1.20371 0.92221 0.94516 1.20474 1.17872 0.83269 0.86903 0.74386 1.90713 1.87220 1.16621 1.53903 1.45608 1.04390 1.10495 1.74563 1.20653 0.83631 0.93229 0.96161 0.91822 1.22234 0.98298 1.00695 0.95388 1.21086 0.86577 0.93442 0.96926 1.44415 1.08769 1.66696 1.14034 1.18883 0.82934 1.43897 0.92287 0.92202 1.25844 0.94905 0.99945 1.01677 1.69944 1.03184 1.47232 1.39283 0.86031 0.75554 0.79628 0.81932 1.19208 1.23835 1.19625 1.22043 0.97180 0.96359 0.87188 1.22398 0.93304 0.96760 0.83861 0.91167 1.86448 1.45358 1.78515 1.27306 1.21894 0.89758 0.92789 1.02640 0.89381 0.87319 0.88673 0.78021 0.82676 0.75464 0.91071 0.90793 0.95179 0.91179 0.92752 0.95131 0.91501 0.75695 0.80534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 11.04 127.77 1.41 1.69 16 2 N -0.44 -6.28 3.09 -547.88 -1.69 -7.97 16 3 C -0.01 -0.11 11.34 83.12 0.94 0.83 16 4 C -0.19 -3.64 10.56 23.62 0.25 -3.39 16 5 C -0.27 -6.96 6.29 -19.04 -0.12 -7.08 16 6 C 0.58 19.48 7.77 86.62 0.67 20.15 16 7 O -0.60 -24.41 16.57 -4.10 -0.07 -24.48 16 8 N -0.70 -21.60 4.91 -445.83 -2.19 -23.79 16 9 C 0.17 5.97 2.12 45.02 0.10 6.06 16 10 H 0.06 2.60 7.57 -2.39 -0.02 2.58 16 11 C -0.13 -4.46 5.65 30.67 0.17 -4.29 16 12 C 0.14 5.91 6.52 86.36 0.56 6.47 16 13 N -0.61 -29.08 2.77 -699.10 -1.94 -31.02 16 14 C -0.25 -14.06 10.03 84.03 0.84 -13.22 16 15 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 16 C -0.03 -1.63 5.23 84.86 0.44 -1.19 16 17 N -0.95 -58.68 13.97 21.65 0.30 -58.38 16 18 Si 0.94 46.15 24.35 68.60 1.67 47.82 16 19 H -0.27 -11.92 6.62 99.48 0.66 -11.26 16 20 H -0.31 -15.50 7.11 99.48 0.71 -14.80 16 21 H -0.27 -13.28 6.63 99.48 0.66 -12.62 16 22 C 0.10 4.20 3.83 86.36 0.33 4.53 16 23 C 0.10 3.43 3.14 30.67 0.10 3.52 16 24 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 25 O -0.57 -17.65 13.16 -148.98 -1.96 -19.61 16 26 C 0.07 1.42 11.12 83.92 0.93 2.35 16 27 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.11 0.04 8.13 -2.39 -0.02 0.02 16 29 H 0.09 0.29 8.13 -2.39 -0.02 0.27 16 30 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.16 2.53 7.69 -2.91 -0.02 2.51 16 32 H 0.41 10.57 7.73 -92.71 -0.72 9.85 16 33 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.07 2.81 7.93 -2.39 -0.02 2.79 16 37 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.03 1.35 7.07 -2.39 -0.02 1.33 16 39 H 0.07 2.99 4.50 -2.39 -0.01 2.98 16 40 H 0.39 9.15 9.08 -74.06 -0.67 8.48 16 41 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -77.53 334.85 0.33 -77.20 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.43 Total: 23.78 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 6.63 Total: 16.45 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -5.51 Total: -121.15 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -2.03 Total: -44.09 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.67 Total: 47.82 kcal Total: -77.53 0.33 -77.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090193889.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.927 kcal (2) G-P(sol) polarization free energy of solvation -77.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds