Wall clock time and date at job start Tue Mar 31 2020 03:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36590 * 126.57887 * 2 1 4 4 C 1.47523 * 125.77110 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00207 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00151 * 180.02562 * 4 3 2 7 7 C 1.46494 * 120.00253 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47374 * 179.97438 * 7 6 4 9 9 C 1.53783 * 113.61318 * 274.13717 * 8 7 6 10 10 C 1.53955 * 87.01776 * 220.04640 * 9 8 7 11 11 N 1.46505 * 113.53857 * 270.80835 * 10 9 8 12 12 C 1.36936 * 120.00116 * 252.49838 * 11 10 9 13 13 H 1.08001 * 119.99900 * 359.97438 * 12 11 10 14 14 C 1.38808 * 119.99685 * 179.97438 * 12 11 10 15 15 N 1.31619 * 120.00362 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99953 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46641 * 90.00151 * 16 14 12 18 18 H 1.48498 * 109.47054 * 209.99836 * 16 14 12 19 19 H 1.48503 * 109.47188 * 330.00307 * 16 14 12 20 20 C 1.53775 * 87.11390 * 25.36616 * 10 9 8 21 21 N 1.34399 * 108.45883 * 180.02562 * 3 2 1 22 22 N 1.28760 * 109.52582 * 359.70636 * 21 3 2 23 23 N 1.34813 * 126.58152 * 180.02562 * 2 1 3 24 24 C 1.46506 * 126.59230 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47067 * 269.99919 * 1 2 3 26 26 H 1.09000 * 109.47230 * 30.00374 * 1 2 3 27 27 H 1.09005 * 109.47171 * 150.00593 * 1 2 3 28 28 H 0.97000 * 120.00002 * 359.97438 * 6 4 3 29 29 H 1.09005 * 109.47487 * 299.99850 * 7 6 4 30 30 H 1.09006 * 109.47093 * 59.99999 * 7 6 4 31 31 H 1.08996 * 112.85092 * 45.33035 * 8 7 6 32 32 H 1.09003 * 113.61755 * 334.56698 * 9 8 7 33 33 H 1.09002 * 113.61582 * 105.47234 * 9 8 7 34 34 H 1.09003 * 113.73959 * 139.94564 * 10 9 8 35 35 H 0.97002 * 119.99704 * 72.49719 * 11 10 9 36 36 H 0.96999 * 120.00417 * 179.97438 * 15 14 12 37 37 H 1.09007 * 113.61355 * 220.09356 * 20 10 9 38 38 H 1.08994 * 113.61774 * 89.18457 * 20 10 9 39 39 H 1.09001 * 109.47060 * 90.00675 * 24 23 2 40 40 H 1.09004 * 109.47073 * 210.00164 * 24 23 2 41 41 H 1.09000 * 109.47212 * 330.00247 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6859 2.7628 0.0015 6 7 2.7816 3.4988 0.0000 7 6 2.3375 4.8947 0.0011 8 6 3.5574 5.8181 0.0007 9 6 4.1109 6.1080 1.4059 10 6 4.3257 7.5578 0.9345 11 7 5.6351 7.7847 0.3179 12 6 6.5930 8.4981 0.9877 13 1 6.3830 8.8940 1.9704 14 6 7.8338 8.7125 0.4037 15 7 8.0899 8.2297 -0.7937 16 14 9.1403 9.6864 1.3170 17 1 9.9632 8.7620 2.1377 18 1 10.0101 10.3869 0.3383 19 1 8.4862 10.6843 2.2011 20 6 3.1997 7.3115 -0.0834 21 7 3.5983 0.6789 -0.0006 22 7 3.6299 -0.6083 0.0053 23 7 2.3104 -1.0826 -0.0005 24 6 1.8863 -2.4849 -0.0006 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3634 -0.8901 -0.5138 28 1 3.7292 3.2913 -0.0004 29 1 1.7366 5.0856 -0.8882 30 1 1.7386 5.0848 0.8918 31 1 4.3206 5.5110 -0.7143 32 1 3.3669 6.0117 2.1967 33 1 5.0373 5.5785 1.6281 34 1 4.0773 8.3055 1.6878 35 1 5.8236 7.4294 -0.5648 36 1 8.9569 8.3799 -1.2020 37 1 3.3916 7.7519 -1.0619 38 1 2.2062 7.5447 0.2994 39 1 1.7809 -2.8325 -1.0283 40 1 2.6333 -3.0904 0.5129 41 1 0.9295 -2.5752 0.5135 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090966896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:56 Heat of formation + Delta-G solvation = 61.191245 kcal Electronic energy + Delta-G solvation = -22661.405385 eV Core-core repulsion = 19192.343805 eV Total energy + Delta-G solvation = -3469.061580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.31935 -40.70849 -39.71590 -36.18471 -35.79381 -34.88995 -33.32905 -32.08062 -29.77683 -28.33443 -28.13301 -26.41422 -25.74626 -24.47240 -23.04517 -21.99649 -21.49599 -19.92730 -19.35807 -18.86044 -17.48001 -17.22500 -16.81187 -16.67612 -16.28138 -15.74135 -15.70510 -15.25681 -15.00358 -14.72660 -14.58349 -14.21013 -14.11748 -13.95412 -13.68804 -13.31258 -13.26263 -12.98209 -12.93206 -12.89844 -12.61226 -12.19635 -12.16109 -12.05199 -11.56568 -11.46911 -11.17521 -11.13593 -10.90460 -10.77146 -10.33996 -9.96155 -8.99056 -7.94610 -5.22974 0.09433 0.56896 1.13118 1.47638 1.49454 1.57813 2.15013 2.20185 2.56348 3.16637 3.37743 3.43335 3.62156 3.70796 3.75507 3.81490 3.92295 4.16080 4.32912 4.34720 4.40909 4.43991 4.60699 4.65658 4.67267 4.75056 4.78193 4.83918 4.95251 5.01006 5.06382 5.14387 5.28393 5.37335 5.46964 5.52242 5.56672 5.68580 6.29090 6.39956 6.86295 7.10810 7.33688 8.11679 8.33457 9.28879 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.002724 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.982375 B =10277.801835 C =11109.333516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.133 3.867 3 C -0.136 4.136 4 C 0.603 3.397 5 O -0.559 6.559 6 N -0.710 5.710 7 C 0.142 3.858 8 C -0.106 4.106 9 C -0.156 4.156 10 C 0.144 3.856 11 N -0.721 5.721 12 C -0.241 4.241 13 H 0.078 0.922 14 C -0.078 4.078 15 N -0.971 5.971 16 Si 0.973 3.027 17 H -0.289 1.289 18 H -0.296 1.296 19 H -0.268 1.268 20 C -0.129 4.129 21 N -0.230 5.230 22 N -0.097 5.097 23 N -0.354 5.354 24 C 0.072 3.928 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.409 0.591 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.373 0.627 36 H 0.251 0.749 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 -22.162 1.977 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.276 4.276 4 C 0.388 3.612 5 O -0.438 6.438 6 N -0.359 5.359 7 C 0.019 3.981 8 C -0.125 4.125 9 C -0.196 4.196 10 C 0.034 3.966 11 N -0.359 5.359 12 C -0.373 4.373 13 H 0.095 0.905 14 C -0.270 4.270 15 N -0.621 5.621 16 Si 0.802 3.198 17 H -0.216 1.216 18 H -0.223 1.223 19 H -0.192 1.192 20 C -0.169 4.169 21 N -0.103 5.103 22 N -0.077 5.077 23 N -0.140 5.140 24 C -0.067 4.067 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.244 0.756 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.205 0.795 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.504 -22.285 2.114 29.690 hybrid contribution 1.005 0.416 -0.131 1.096 sum -18.499 -21.868 1.983 28.712 Atomic orbital electron populations 1.20845 0.81909 1.06417 1.05811 1.22407 0.97563 0.85627 0.95068 1.21365 0.89512 0.95899 1.20854 1.16852 0.85352 0.82987 0.75977 1.90724 1.16265 1.84080 1.52707 1.45893 1.10409 1.06308 1.73322 1.21412 0.95972 0.78172 1.02549 1.22509 0.96603 0.95142 0.98277 1.23765 1.00043 0.99606 0.96204 1.21437 0.85234 0.94788 0.95165 1.42333 1.10627 1.63609 1.19335 1.19688 0.93079 1.24847 0.99707 0.90459 1.25578 1.00265 1.03275 0.97860 1.69818 1.23185 1.52228 1.16888 0.85136 0.79036 0.78288 0.77291 1.21597 1.22254 1.19246 1.23325 0.99711 0.93925 0.99899 1.74599 1.20115 1.04992 1.10544 1.81910 0.98122 1.03076 1.24560 1.50655 1.05190 1.09485 1.48630 1.22733 1.04203 0.73101 1.06667 0.87526 0.88629 0.86889 0.75569 0.90960 0.90456 0.90678 0.88769 0.93956 0.91918 0.79451 0.94051 0.92303 0.87063 0.87267 0.87213 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.38 71.24 0.67 -0.28 16 2 C 0.13 2.46 7.02 41.72 0.29 2.75 16 3 C -0.14 -3.56 6.99 40.82 0.29 -3.27 16 4 C 0.60 16.97 7.82 86.69 0.68 17.65 16 5 O -0.56 -16.66 14.72 -4.02 -0.06 -16.72 16 6 N -0.71 -19.68 5.55 -466.27 -2.59 -22.26 16 7 C 0.14 3.73 5.50 86.38 0.47 4.21 16 8 C -0.11 -3.24 3.62 -10.26 -0.04 -3.28 16 9 C -0.16 -5.26 7.44 31.18 0.23 -5.02 16 10 C 0.14 5.63 4.57 45.57 0.21 5.84 16 11 N -0.72 -36.77 5.31 -320.17 -1.70 -38.47 16 12 C -0.24 -13.58 9.97 84.03 0.84 -12.74 16 13 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 14 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 15 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 16 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 17 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 18 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C -0.13 -4.01 7.39 31.12 0.23 -3.78 16 21 N -0.23 -6.74 12.04 -50.00 -0.60 -7.34 16 22 N -0.10 -2.50 13.79 37.02 0.51 -1.99 16 23 N -0.35 -5.85 4.03 -355.08 -1.43 -7.28 16 24 C 0.07 0.27 11.18 127.77 1.43 1.70 16 25 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 1.44 6.43 -2.39 -0.02 1.42 16 27 H 0.11 0.29 7.82 -2.38 -0.02 0.27 16 28 H 0.41 11.67 8.16 -92.71 -0.76 10.91 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.08 1.94 7.87 -2.38 -0.02 1.92 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.09 2.69 7.92 -2.39 -0.02 2.68 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 2.43 8.10 -2.39 -0.02 2.41 16 35 H 0.37 20.47 7.90 -92.71 -0.73 19.74 16 36 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.11 2.73 8.10 -2.39 -0.02 2.71 16 39 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 41 H 0.13 -0.33 7.76 -2.39 -0.02 -0.35 16 Total: -1.00 -76.06 348.94 1.78 -74.28 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.43 Total: 31.30 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.76 Total: -0.31 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -5.53 Total: -137.45 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.06 Total: -16.72 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -76.06 1.78 -74.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090966896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.476 kcal (2) G-P(sol) polarization free energy of solvation -76.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds