Wall clock time and date at job start Tue Mar 31 2020 03:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46886 * 2 1 4 4 O 1.21279 * 120.00388 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99740 * 180.02562 * 3 2 1 6 6 C 1.47421 * 125.64852 * 359.97120 * 5 3 2 7 7 C 1.54917 * 104.83002 * 155.91133 * 6 5 3 8 8 C 1.55151 * 101.58025 * 37.01304 * 7 6 5 9 9 H 1.09000 * 110.72429 * 82.86540 * 8 7 6 10 10 N 1.46508 * 110.71893 * 206.13557 * 8 7 6 11 11 C 1.35317 * 125.86545 * 33.26260 * 10 8 7 12 12 C 1.35349 * 106.17211 * 179.90573 * 11 10 8 13 13 C 1.50701 * 126.75121 * 180.12578 * 12 11 10 14 14 N 1.46494 * 109.47057 * 95.29453 * 13 12 11 15 15 C 1.36945 * 119.99692 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99838 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99625 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00157 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47184 * 59.99579 * 19 17 15 21 21 H 1.48501 * 109.47341 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47259 * 300.00137 * 19 17 15 23 23 N 1.33772 * 106.49463 * 0.35107 * 12 11 10 24 24 N 1.28634 * 108.88893 * 359.77402 * 23 12 11 25 25 C 1.47021 * 125.64696 * 180.02562 * 5 3 2 26 26 H 1.08998 * 109.47347 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47132 * 299.99795 * 1 2 3 28 28 H 1.09002 * 109.47331 * 59.99549 * 1 2 3 29 29 H 1.09001 * 109.46766 * 240.00555 * 2 1 3 30 30 H 1.09001 * 109.47199 * 119.99914 * 2 1 3 31 31 H 1.09002 * 110.36865 * 37.07626 * 6 5 3 32 32 H 1.08994 * 110.46657 * 274.79775 * 6 5 3 33 33 H 1.08998 * 111.00193 * 155.08783 * 7 6 5 34 34 H 1.09004 * 111.00194 * 278.93638 * 7 6 5 35 35 H 1.08000 * 126.91502 * 0.02562 * 11 10 8 36 36 H 1.09001 * 109.46937 * 215.29670 * 13 12 11 37 37 H 1.08995 * 109.47097 * 335.28938 * 13 12 11 38 38 H 0.97000 * 120.00610 * 0.02562 * 14 13 12 39 39 H 0.96996 * 119.99796 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.88310 * 300.43775 * 25 5 3 41 41 H 1.09000 * 109.88323 * 61.60169 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4210 0.6463 -0.0005 7 6 5.6535 1.3579 -0.6124 8 6 5.5100 2.7877 -0.0272 9 1 5.9239 2.8355 0.9800 10 7 6.1535 3.7722 -0.9007 11 6 6.2284 3.7058 -2.2502 12 6 6.8999 4.8125 -2.6454 13 6 7.2408 5.2030 -4.0605 14 7 6.2208 6.1212 -4.5729 15 6 6.3209 6.6139 -5.8467 16 1 7.1520 6.3259 -6.4732 17 6 5.3546 7.4843 -6.3320 18 7 4.3419 7.8357 -5.5681 19 14 5.4907 8.1559 -8.0698 20 1 5.4782 7.0299 -9.0380 21 1 4.3422 9.0565 -8.3438 22 1 6.7596 8.9145 -8.2093 23 7 7.2058 5.4888 -1.5326 24 7 6.7495 4.8462 -0.5160 25 6 3.9815 2.9983 -0.0001 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 4.1300 -0.2048 -0.6162 32 1 4.6371 0.3212 1.0171 33 1 6.5800 0.8904 -0.2790 34 1 5.5952 1.3735 -1.7008 35 1 5.8305 2.9274 -2.8844 36 1 8.2136 5.6945 -4.0774 37 1 7.2737 4.3108 -4.6857 38 1 5.4749 6.3807 -4.0097 39 1 3.6670 8.4442 -5.9072 40 1 3.6682 3.5549 -0.8833 41 1 3.6979 3.5404 0.9021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098589416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:14 Heat of formation + Delta-G solvation = 84.292662 kcal Electronic energy + Delta-G solvation = -23073.568369 eV Core-core repulsion = 19605.508542 eV Total energy + Delta-G solvation = -3468.059827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.07443 -40.46829 -38.13837 -35.06308 -34.06229 -33.09707 -31.92844 -30.91516 -29.96740 -29.28297 -25.93328 -25.55115 -23.38465 -23.18331 -22.72932 -20.88705 -20.58057 -19.61559 -17.94228 -17.51988 -17.03416 -16.38821 -16.07364 -15.70493 -15.10015 -14.75514 -14.55606 -14.07038 -14.00863 -13.60970 -13.33088 -13.20067 -12.88584 -12.72820 -12.68468 -12.56289 -12.29713 -12.03306 -11.95773 -11.60098 -11.46213 -11.25108 -10.88058 -10.77440 -10.46480 -10.22959 -10.10604 -9.89245 -9.70803 -9.14505 -8.88702 -8.83793 -6.89674 -5.70865 -3.01114 1.72989 2.09957 2.29154 2.66573 2.89035 3.48250 3.52373 3.54007 3.65545 3.77152 4.21375 4.29384 4.37829 4.55344 4.65005 4.66214 4.69243 4.75360 4.87872 5.08259 5.12481 5.18500 5.27470 5.31406 5.39686 5.46048 5.49942 5.58024 5.63878 5.68712 5.83634 5.91833 6.19102 6.38869 6.64451 6.72430 6.78181 7.00708 7.72768 7.79339 8.45989 8.80560 9.57567 10.13181 10.48898 11.51682 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.003446 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.718149 B = 8123.687553 C = 9344.441793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C 0.527 3.473 4 O -0.529 6.529 5 N -0.622 5.622 6 C 0.103 3.897 7 C -0.143 4.143 8 C 0.138 3.862 9 H 0.130 0.870 10 N -0.294 5.294 11 C -0.042 4.042 12 C -0.002 4.002 13 C 0.233 3.767 14 N -0.726 5.726 15 C -0.242 4.242 16 H 0.073 0.927 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.910 3.090 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.285 1.285 23 N -0.251 5.251 24 N -0.093 5.093 25 C 0.098 3.902 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.186 0.814 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 -23.387 14.577 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C 0.316 3.684 4 O -0.404 6.404 5 N -0.359 5.359 6 C -0.021 4.021 7 C -0.182 4.182 8 C 0.034 3.966 9 H 0.148 0.852 10 N -0.089 5.089 11 C -0.192 4.192 12 C -0.139 4.139 13 C 0.104 3.896 14 N -0.371 5.371 15 C -0.373 4.373 16 H 0.091 0.909 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 N -0.118 5.118 24 N -0.071 5.071 25 C -0.026 4.026 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.203 0.797 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.922 -21.985 15.632 26.992 hybrid contribution -0.532 -0.214 -1.568 1.669 sum -1.454 -22.199 14.065 26.320 Atomic orbital electron populations 1.21561 0.92733 1.01774 1.03651 1.21617 0.98780 0.92993 1.04311 1.20596 0.79883 0.92232 0.75705 1.90769 1.54093 1.46740 1.48805 1.48452 1.05472 1.07109 1.74854 1.22355 0.86050 0.91956 1.01709 1.23292 0.99480 0.92619 1.02839 1.22487 0.92508 0.86474 0.95110 0.85211 1.47105 1.38091 1.17556 1.06100 1.23265 1.07491 1.04144 0.84333 1.22481 1.01349 0.92670 0.97430 1.18950 0.93770 0.93910 0.83016 1.42301 1.26715 1.53657 1.14403 1.19177 1.06794 1.21638 0.89711 0.90935 1.24769 0.97398 1.00285 0.98390 1.69675 1.13617 1.38499 1.36132 0.86232 0.76909 0.78571 0.84228 1.21245 1.21721 1.21179 1.75111 1.18037 1.22755 0.95898 1.78290 1.11309 0.94855 1.22645 1.22227 0.89920 0.85862 1.04639 0.91861 0.91898 0.91737 0.88755 0.88857 0.89237 0.90202 0.87887 0.88620 0.79651 0.94293 0.94518 0.78086 0.93423 0.89793 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.14 -0.84 5.43 -27.88 -0.15 -1.00 16 3 C 0.53 5.53 7.85 -10.98 -0.09 5.44 16 4 O -0.53 -8.21 16.31 5.56 0.09 -8.11 16 5 N -0.62 -5.36 3.33 -170.52 -0.57 -5.92 16 6 C 0.10 0.43 6.69 -2.53 -0.02 0.42 16 7 C -0.14 -0.75 6.48 -24.58 -0.16 -0.91 16 8 C 0.14 1.21 3.98 -66.09 -0.26 0.94 16 9 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 10 N -0.29 -4.03 3.28 -52.98 -0.17 -4.20 16 11 C -0.04 -0.63 10.59 -17.05 -0.18 -0.81 16 12 C 0.00 -0.03 6.62 -82.78 -0.55 -0.58 16 13 C 0.23 4.93 6.82 -5.20 -0.04 4.89 16 14 N -0.73 -19.32 5.59 -61.09 -0.34 -19.66 16 15 C -0.24 -6.93 9.99 -15.05 -0.15 -7.08 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -29.24 13.06 55.49 0.72 -28.52 16 19 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 N -0.25 -5.13 12.41 33.29 0.41 -4.71 16 24 N -0.09 -1.63 13.16 60.35 0.79 -0.83 16 25 C 0.10 1.03 6.62 -3.06 -0.02 1.01 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 28 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 29 H 0.09 0.41 7.85 -51.93 -0.41 0.01 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.22 7.48 -51.93 -0.39 -0.17 16 32 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.56 6.39 -51.93 -0.33 0.23 16 35 H 0.19 2.18 7.00 -52.49 -0.37 1.81 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.39 11.13 7.66 -40.82 -0.31 10.82 16 39 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 40 H 0.08 1.16 8.03 -51.93 -0.42 0.75 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -37.80 345.65 -6.23 -44.04 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.99 Total: 3.73 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.37 Total: 1.21 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: 0.85 Total: -63.85 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.80 -6.23 -44.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098589416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.330 kcal (2) G-P(sol) polarization free energy of solvation -37.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds