Wall clock time and date at job start Tue Mar 31 2020 03:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46886 * 2 1 4 4 O 1.21279 * 120.00388 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99740 * 180.02562 * 3 2 1 6 6 C 1.47421 * 125.64852 * 359.97120 * 5 3 2 7 7 C 1.54917 * 104.83002 * 155.91133 * 6 5 3 8 8 C 1.55151 * 101.58025 * 37.01304 * 7 6 5 9 9 H 1.09000 * 110.72429 * 82.86540 * 8 7 6 10 10 N 1.46508 * 110.71893 * 206.13557 * 8 7 6 11 11 C 1.35317 * 125.86545 * 33.26260 * 10 8 7 12 12 C 1.35349 * 106.17211 * 179.90573 * 11 10 8 13 13 C 1.50701 * 126.75121 * 180.12578 * 12 11 10 14 14 N 1.46494 * 109.47057 * 95.29453 * 13 12 11 15 15 C 1.36945 * 119.99692 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99838 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99625 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00157 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47184 * 59.99579 * 19 17 15 21 21 H 1.48501 * 109.47341 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47259 * 300.00137 * 19 17 15 23 23 N 1.33772 * 106.49463 * 0.35107 * 12 11 10 24 24 N 1.28634 * 108.88893 * 359.77402 * 23 12 11 25 25 C 1.47021 * 125.64696 * 180.02562 * 5 3 2 26 26 H 1.08998 * 109.47347 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47132 * 299.99795 * 1 2 3 28 28 H 1.09002 * 109.47331 * 59.99549 * 1 2 3 29 29 H 1.09001 * 109.46766 * 240.00555 * 2 1 3 30 30 H 1.09001 * 109.47199 * 119.99914 * 2 1 3 31 31 H 1.09002 * 110.36865 * 37.07626 * 6 5 3 32 32 H 1.08994 * 110.46657 * 274.79775 * 6 5 3 33 33 H 1.08998 * 111.00193 * 155.08783 * 7 6 5 34 34 H 1.09004 * 111.00194 * 278.93638 * 7 6 5 35 35 H 1.08000 * 126.91502 * 0.02562 * 11 10 8 36 36 H 1.09001 * 109.46937 * 215.29670 * 13 12 11 37 37 H 1.08995 * 109.47097 * 335.28938 * 13 12 11 38 38 H 0.97000 * 120.00610 * 0.02562 * 14 13 12 39 39 H 0.96996 * 119.99796 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.88310 * 300.43775 * 25 5 3 41 41 H 1.09000 * 109.88323 * 61.60169 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4210 0.6463 -0.0005 7 6 5.6535 1.3579 -0.6124 8 6 5.5100 2.7877 -0.0272 9 1 5.9239 2.8355 0.9800 10 7 6.1535 3.7722 -0.9007 11 6 6.2284 3.7058 -2.2502 12 6 6.8999 4.8125 -2.6454 13 6 7.2408 5.2030 -4.0605 14 7 6.2208 6.1212 -4.5729 15 6 6.3209 6.6139 -5.8467 16 1 7.1520 6.3259 -6.4732 17 6 5.3546 7.4843 -6.3320 18 7 4.3419 7.8357 -5.5681 19 14 5.4907 8.1559 -8.0698 20 1 5.4782 7.0299 -9.0380 21 1 4.3422 9.0565 -8.3438 22 1 6.7596 8.9145 -8.2093 23 7 7.2058 5.4888 -1.5326 24 7 6.7495 4.8462 -0.5160 25 6 3.9815 2.9983 -0.0001 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 4.1300 -0.2048 -0.6162 32 1 4.6371 0.3212 1.0171 33 1 6.5800 0.8904 -0.2790 34 1 5.5952 1.3735 -1.7008 35 1 5.8305 2.9274 -2.8844 36 1 8.2136 5.6945 -4.0774 37 1 7.2737 4.3108 -4.6857 38 1 5.4749 6.3807 -4.0097 39 1 3.6670 8.4442 -5.9072 40 1 3.6682 3.5549 -0.8833 41 1 3.6979 3.5404 0.9021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098589416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:13 Heat of formation + Delta-G solvation = 55.219756 kcal Electronic energy + Delta-G solvation = -23074.829065 eV Core-core repulsion = 19605.508542 eV Total energy + Delta-G solvation = -3469.320523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.34579 -41.21649 -38.94819 -36.84031 -35.27447 -33.84769 -33.59873 -31.79952 -31.58871 -30.06989 -27.69429 -26.35644 -24.84170 -24.14898 -23.80437 -22.23418 -21.59489 -20.26942 -19.41439 -18.66962 -18.12485 -17.47802 -16.95540 -16.64258 -16.54477 -16.02523 -15.70226 -15.50026 -15.10879 -14.79651 -14.53389 -14.28168 -13.97020 -13.81419 -13.55839 -13.28730 -13.17107 -13.03959 -12.91028 -12.72926 -12.61495 -12.60237 -12.14426 -12.11493 -11.95916 -11.89157 -11.81116 -11.18305 -10.96763 -10.94834 -10.26472 -9.86147 -9.04142 -7.94338 -5.25600 0.51200 1.16879 1.41974 1.49691 1.53092 1.53826 1.59297 1.93856 2.58773 3.03268 3.11798 3.35091 3.42155 3.64480 3.69566 3.84751 3.91404 4.09092 4.17190 4.19717 4.23514 4.24183 4.36621 4.46632 4.56888 4.62926 4.71149 4.84070 4.84539 4.95597 4.97886 5.04634 5.09620 5.09826 5.17577 5.35389 5.49359 5.62841 6.24474 6.34907 7.05122 7.31006 7.46309 8.02524 8.28070 9.29476 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.003446 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.718149 B = 8123.687553 C = 9344.441793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.515 3.485 4 O -0.596 6.596 5 N -0.619 5.619 6 C 0.101 3.899 7 C -0.134 4.134 8 C 0.132 3.868 9 H 0.154 0.846 10 N -0.277 5.277 11 C -0.017 4.017 12 C -0.035 4.035 13 C 0.235 3.765 14 N -0.741 5.741 15 C -0.245 4.245 16 H 0.087 0.913 17 C -0.080 4.080 18 N -0.975 5.975 19 Si 0.982 3.018 20 H -0.270 1.270 21 H -0.299 1.299 22 H -0.277 1.277 23 N -0.296 5.296 24 N -0.108 5.108 25 C 0.099 3.901 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.222 0.778 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.369 0.631 39 H 0.250 0.750 40 H 0.042 0.958 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 -27.355 14.555 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.306 3.694 4 O -0.477 6.477 5 N -0.353 5.353 6 C -0.020 4.020 7 C -0.172 4.172 8 C 0.030 3.970 9 H 0.171 0.829 10 N -0.071 5.071 11 C -0.168 4.168 12 C -0.174 4.174 13 C 0.107 3.893 14 N -0.384 5.384 15 C -0.376 4.376 16 H 0.105 0.895 17 C -0.271 4.271 18 N -0.626 5.626 19 Si 0.810 3.190 20 H -0.196 1.196 21 H -0.225 1.225 22 H -0.203 1.203 23 N -0.163 5.163 24 N -0.086 5.086 25 C -0.027 4.027 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.153 0.847 34 H 0.111 0.889 35 H 0.238 0.762 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.199 0.801 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.394 -26.028 15.637 30.366 hybrid contribution -0.909 0.917 -1.448 1.940 sum -0.515 -25.111 14.190 28.847 Atomic orbital electron populations 1.21583 0.94001 1.02848 1.01539 1.21699 0.97599 0.90045 1.07201 1.21577 0.79902 0.93510 0.74382 1.90740 1.55951 1.48980 1.51982 1.48574 1.05975 1.07238 1.73563 1.22767 0.83745 0.91235 1.04255 1.23416 1.01556 0.89586 1.02672 1.23002 0.90609 0.87406 0.95977 0.82888 1.47458 1.36316 1.16955 1.06409 1.23619 1.04903 1.03244 0.85034 1.22304 1.04062 0.94598 0.96395 1.18993 0.91808 0.93588 0.84864 1.42539 1.27362 1.54655 1.13823 1.19692 1.06598 1.20759 0.90584 0.89503 1.25697 0.97366 1.01304 1.02769 1.69870 1.14742 1.39734 1.38247 0.85095 0.76605 0.77980 0.79361 1.19565 1.22548 1.20304 1.75034 1.19958 1.24459 0.96858 1.78170 1.12279 0.96068 1.22124 1.22024 0.91491 0.87068 1.02102 0.89003 0.93721 0.94311 0.85932 0.85345 0.86153 0.87070 0.84691 0.88873 0.76176 0.95098 0.91732 0.80061 0.94141 0.93970 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.20 71.98 0.66 -1.21 16 2 C -0.13 -1.16 5.43 29.85 0.16 -1.00 16 3 C 0.51 10.33 7.85 87.66 0.69 11.01 16 4 O -0.60 -19.51 16.31 -3.03 -0.05 -19.56 16 5 N -0.62 -9.39 3.33 -811.79 -2.70 -12.09 16 6 C 0.10 0.34 6.69 86.86 0.58 0.92 16 7 C -0.13 -0.78 6.48 31.99 0.21 -0.57 16 8 C 0.13 2.00 3.98 46.18 0.18 2.18 16 9 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 10 N -0.28 -7.28 3.28 -321.53 -1.05 -8.33 16 11 C -0.02 -0.47 10.59 83.49 0.88 0.41 16 12 C -0.04 -1.35 6.62 41.60 0.28 -1.08 16 13 C 0.24 9.96 6.82 85.63 0.58 10.54 16 14 N -0.74 -40.14 5.59 -347.19 -1.94 -42.08 16 15 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 16 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 17 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 18 N -0.98 -63.04 13.06 21.65 0.28 -62.76 16 19 Si 0.98 47.28 29.55 68.60 2.03 49.30 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 N -0.30 -12.40 12.41 -48.60 -0.60 -13.01 16 24 N -0.11 -3.81 13.16 37.02 0.49 -3.32 16 25 C 0.10 2.06 6.62 86.73 0.57 2.63 16 26 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.04 0.73 8.10 -2.39 -0.02 0.72 16 28 H 0.04 0.70 8.10 -2.39 -0.02 0.68 16 29 H 0.12 0.49 7.85 -2.39 -0.02 0.47 16 30 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.12 -0.20 7.48 -2.39 -0.02 -0.22 16 32 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.09 0.66 6.39 -2.38 -0.02 0.64 16 35 H 0.22 4.51 7.00 -2.91 -0.02 4.49 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.37 22.09 7.66 -92.71 -0.71 21.38 16 39 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.04 1.23 8.03 -2.39 -0.02 1.22 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -89.25 345.65 2.89 -86.36 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.33 Total: 19.13 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 6.11 Total: 6.35 kcal Atomic # 7 Polarization: -136.05 SS G_CDS: -5.53 Total: -141.58 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -89.25 2.89 -86.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098589416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.578 kcal (2) G-P(sol) polarization free energy of solvation -89.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds