Wall clock time and date at job start Tue Mar 31 2020 03:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48503 * 109.46726 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47021 * 299.99864 * 3 2 1 6 6 H 1.48502 * 109.47101 * 59.99957 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47090 * 179.97438 * 18 17 15 20 20 N 1.33241 * 125.52550 * 269.69164 * 19 18 17 21 21 C 1.30835 * 109.82715 * 179.85960 * 20 19 18 22 22 N 1.34434 * 108.07998 * 0.39993 * 21 20 19 23 23 H 0.96991 * 126.82255 * 179.79334 * 22 21 20 24 24 N 1.30713 * 125.52781 * 90.00104 * 19 18 17 25 25 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 26 26 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 28 28 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 29 29 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 30 30 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 31 31 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 32 32 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 33 33 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 34 34 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 35 35 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 36 36 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 37 37 H 1.09005 * 109.46587 * 299.99693 * 18 17 15 38 38 H 1.08995 * 109.46937 * 59.99982 * 18 17 15 39 39 H 1.07998 * 125.96086 * 180.12627 * 21 20 19 40 40 H 1.08999 * 113.61567 * 334.48111 * 25 10 9 41 41 H 1.08998 * 113.61196 * 105.38466 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 6 0.6448 -10.3106 4.4801 19 6 1.3703 -11.1802 5.4743 20 7 1.9484 -12.3496 5.2031 21 6 2.4903 -12.8391 6.2887 22 7 2.2569 -11.9795 7.2956 23 1 2.5359 -12.0768 8.2195 24 7 1.5296 -10.9123 6.7437 25 6 1.2469 -4.8365 -0.5606 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 3.0560 -3.5693 -0.4293 29 1 2.9742 -4.3216 1.9018 30 1 1.1688 -4.1300 1.9705 31 1 2.8060 -6.1607 0.2828 32 1 0.0882 -6.1151 1.7060 33 1 0.4334 -7.2968 0.4205 34 1 2.5317 -7.3971 2.3080 35 1 2.4196 -9.8859 3.3348 36 1 2.0731 -8.7043 4.6201 37 1 -0.1422 -9.7545 4.9895 38 1 0.2038 -10.9365 3.7044 39 1 3.0273 -13.7731 6.3639 40 1 0.1684 -4.7076 -0.4690 41 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100226896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:51 Heat of formation + Delta-G solvation = 42.933566 kcal Electronic energy + Delta-G solvation = -21875.735387 eV Core-core repulsion = 18405.882095 eV Total energy + Delta-G solvation = -3469.853292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.05773 -40.88341 -39.76638 -36.07294 -35.24693 -34.97216 -32.98678 -32.22790 -31.58040 -28.88668 -26.43855 -26.34657 -25.38933 -23.62207 -22.41596 -21.64100 -21.03075 -20.39895 -19.23640 -19.04142 -18.05519 -17.21313 -16.87359 -16.64911 -16.32652 -16.11834 -15.92402 -15.48255 -15.11866 -14.92047 -14.67455 -14.01442 -13.80628 -13.40112 -13.23295 -13.21366 -13.09088 -13.01489 -12.89964 -12.63874 -12.16504 -12.14711 -12.04916 -11.58020 -11.53812 -11.12595 -11.07157 -11.04561 -10.89521 -10.80284 -10.60829 -10.02211 -8.96570 -7.93964 -5.22243 0.66412 1.47567 1.48421 1.58476 1.67014 1.80377 1.87661 2.29406 2.57246 3.21917 3.38187 3.66628 3.74138 3.78141 3.82844 3.93623 4.12474 4.22569 4.28167 4.33294 4.38238 4.46085 4.58753 4.60555 4.82336 4.92893 4.99371 5.00087 5.01576 5.08800 5.24770 5.26442 5.37391 5.40184 5.47706 5.55501 5.76257 6.28254 6.28616 6.60670 7.12103 7.29718 7.33811 8.12738 8.34138 9.29795 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032220 B = 0.002054 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.828203 B =13626.677156 C =13976.398090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.142 3.858 11 C -0.154 4.154 12 C -0.094 4.094 13 C 0.137 3.863 14 N -0.714 5.714 15 C 0.512 3.488 16 O -0.587 6.587 17 C -0.117 4.117 18 C -0.008 4.008 19 C 0.221 3.779 20 N -0.577 5.577 21 C 0.277 3.723 22 N -0.477 5.477 23 H 0.458 0.542 24 N -0.346 5.346 25 C -0.137 4.137 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.123 0.877 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.417 0.583 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.273 0.727 40 H 0.066 0.934 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.532 -28.875 12.499 33.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.033 3.967 11 C -0.194 4.194 12 C -0.113 4.113 13 C 0.013 3.987 14 N -0.366 5.366 15 C 0.299 3.701 16 O -0.468 6.468 17 C -0.158 4.158 18 C -0.049 4.049 19 C -0.062 4.062 20 N -0.306 5.306 21 C -0.021 4.021 22 N -0.196 5.196 23 H 0.307 0.693 24 N -0.177 5.177 25 C -0.176 4.176 26 H 0.058 0.942 27 H 0.203 0.797 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.254 0.746 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.289 0.711 40 H 0.084 0.916 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.577 -28.342 12.348 32.364 hybrid contribution 0.194 1.079 0.755 1.331 sum 9.770 -27.263 13.102 31.787 Atomic orbital electron populations 1.69835 1.06727 1.25904 1.59903 1.25619 0.96399 1.01306 1.04088 0.85061 0.78363 0.79794 0.76482 1.18708 1.22194 1.22348 1.19778 0.91631 0.85365 1.40398 0.90219 1.42655 1.05360 1.01285 1.87540 1.21977 0.95599 0.83864 0.95295 1.23768 1.00998 0.96119 0.98533 1.22516 0.99485 0.92979 0.96337 1.21215 0.94571 0.91812 0.91108 1.45912 1.13613 1.35360 1.41699 1.21009 0.87150 0.80525 0.81386 1.90708 1.17339 1.70912 1.67809 1.21477 0.99082 0.97247 0.98013 1.19533 0.95906 0.94758 0.94682 1.24252 0.97643 0.93037 0.91248 1.70437 1.18576 1.11152 1.30485 1.27091 0.95306 0.97746 0.81953 1.48105 1.42349 1.15411 1.13745 0.69341 1.77971 1.17934 1.10843 1.10945 1.23310 0.99754 0.95919 0.98629 0.94153 0.79695 0.90149 0.91344 0.92757 0.85898 0.93714 0.91633 0.74638 0.86322 0.87279 0.89988 0.89059 0.71126 0.91576 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.66 13.06 21.65 0.28 -60.37 16 2 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 3 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 7 C -0.24 -13.32 9.97 84.03 0.84 -12.48 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.73 -37.02 5.41 -320.44 -1.73 -38.75 16 10 C 0.14 5.34 4.47 45.52 0.20 5.55 16 11 C -0.15 -4.85 7.45 31.21 0.23 -4.62 16 12 C -0.09 -2.26 3.76 -10.18 -0.04 -2.30 16 13 C 0.14 3.40 5.51 86.38 0.48 3.88 16 14 N -0.71 -14.26 5.56 -463.06 -2.57 -16.83 16 15 C 0.51 11.81 7.83 87.66 0.69 12.50 16 16 O -0.59 -18.98 15.98 -3.04 -0.05 -19.03 16 17 C -0.12 -1.91 5.68 29.85 0.17 -1.74 16 18 C -0.01 -0.17 5.13 29.85 0.15 -0.01 16 19 C 0.22 4.32 7.39 138.63 1.03 5.35 16 20 N -0.58 -9.84 11.19 -191.80 -2.15 -11.99 16 21 C 0.28 2.15 13.13 180.36 2.37 4.52 16 22 N -0.48 -4.41 7.45 -60.49 -0.45 -4.86 16 23 H 0.46 0.69 8.96 -213.11 -1.91 -1.22 16 24 N -0.35 -6.57 12.80 -51.34 -0.66 -7.23 16 25 C -0.14 -4.16 7.39 31.12 0.23 -3.93 16 26 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.37 20.50 7.91 -92.71 -0.73 19.77 16 28 H 0.08 2.92 8.11 -2.39 -0.02 2.90 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 2.00 7.90 -2.39 -0.02 1.98 16 31 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.04 1.36 7.85 -2.39 -0.02 1.34 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.42 5.63 8.47 -92.71 -0.79 4.85 16 35 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.08 1.81 8.10 -2.38 -0.02 1.79 16 38 H 0.09 1.93 8.10 -2.39 -0.02 1.91 16 39 H 0.27 -1.18 8.06 -2.91 -0.02 -1.20 16 40 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -81.42 352.04 -0.84 -82.26 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -2.36 Total: 25.93 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 6.81 Total: 2.39 kcal Atomic # 7 Polarization: -132.75 SS G_CDS: -7.28 Total: -140.03 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.05 Total: -19.03 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -81.42 -0.84 -82.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100226896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.193 kcal (2) G-P(sol) polarization free energy of solvation -81.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds