Wall clock time and date at job start Tue Mar 31 2020 03:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00400 * 2 1 4 4 H 1.48502 * 109.46955 * 270.00129 * 3 2 1 5 5 H 1.48501 * 109.46834 * 29.99823 * 3 2 1 6 6 H 1.48498 * 109.47413 * 149.99879 * 3 2 1 7 7 C 1.38820 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00464 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99711 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99749 * 179.97438 * 9 7 2 11 11 C 1.53782 * 113.61471 * 205.00321 * 10 9 7 12 12 C 1.53783 * 87.08432 * 219.93635 * 11 10 9 13 13 C 1.52999 * 113.61785 * 139.97920 * 12 11 10 14 14 N 1.46499 * 109.47125 * 176.53245 * 13 12 11 15 15 C 1.34779 * 119.99734 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00387 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99719 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.47062 * 179.97438 * 17 15 14 19 19 N 1.46499 * 109.47396 * 179.97438 * 18 17 15 20 20 C 1.35308 * 125.86944 * 124.99861 * 19 18 17 21 21 C 1.35347 * 106.17713 * 180.02562 * 20 19 18 22 22 N 1.33774 * 106.49812 * 0.02562 * 21 20 19 23 23 N 1.28637 * 108.88333 * 0.02562 * 22 21 20 24 24 C 1.53791 * 87.16962 * 25.38953 * 12 11 10 25 25 H 0.96996 * 119.99921 * 0.02562 * 1 2 3 26 26 H 0.97005 * 120.00002 * 0.02562 * 9 7 2 27 27 H 1.08997 * 112.85541 * 336.19726 * 10 9 7 28 28 H 1.08995 * 113.62110 * 105.38947 * 11 10 9 29 29 H 1.08999 * 113.61396 * 334.48165 * 11 10 9 30 30 H 1.08999 * 113.61389 * 270.80162 * 12 11 10 31 31 H 1.09000 * 109.47243 * 56.52530 * 13 12 11 32 32 H 1.09003 * 109.46940 * 296.53047 * 13 12 11 33 33 H 0.96999 * 120.00320 * 0.02562 * 14 13 12 34 34 H 1.09001 * 109.47072 * 59.99955 * 17 15 14 35 35 H 1.08993 * 109.47309 * 299.99556 * 17 15 14 36 36 H 1.09001 * 109.46828 * 60.00278 * 18 17 15 37 37 H 1.08993 * 109.47081 * 300.00168 * 18 17 15 38 38 H 1.07997 * 126.91159 * 0.02959 * 20 19 18 39 39 H 1.08002 * 126.75518 * 179.97438 * 21 20 19 40 40 H 1.08996 * 113.61508 * 89.16176 * 24 12 11 41 41 H 1.09007 * 113.61016 * 220.06169 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0011 11 6 5.5262 -2.3653 0.5960 12 6 5.9839 -3.3118 -0.5263 13 6 7.3408 -2.9392 -1.1270 14 7 7.7254 -3.9415 -2.1238 15 6 8.8921 -3.8189 -2.7873 16 8 9.6235 -2.8786 -2.5594 17 6 9.2880 -4.8503 -3.8122 18 6 10.6449 -4.4776 -4.4131 19 7 11.0301 -5.4805 -5.4091 20 6 11.3577 -5.2325 -6.6982 21 6 11.6426 -6.4339 -7.2527 22 7 11.4770 -7.3462 -6.2885 23 7 11.1130 -6.7493 -5.2086 24 6 4.7865 -2.7985 -1.3435 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3622 -0.0004 27 1 3.5280 -3.2966 0.4077 28 1 5.6137 -2.7963 1.5933 29 1 5.9556 -1.3659 0.5265 30 1 5.9128 -4.3672 -0.2635 31 1 8.0911 -2.9057 -0.3370 32 1 7.2710 -1.9612 -1.6033 33 1 7.1403 -4.6933 -2.3064 34 1 8.5380 -4.8837 -4.6025 35 1 9.3576 -5.8281 -3.3357 36 1 11.3951 -4.4439 -3.6230 37 1 10.5749 -3.4999 -4.8897 38 1 11.3862 -4.2697 -7.1865 39 1 11.9436 -6.6196 -8.2732 40 1 5.0132 -1.9177 -1.9442 41 1 4.2776 -3.5787 -1.9097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100278056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:59 Heat of formation + Delta-G solvation = 66.694797 kcal Electronic energy + Delta-G solvation = -22065.443843 eV Core-core repulsion = 18596.620915 eV Total energy + Delta-G solvation = -3468.822928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.18083 -41.00177 -39.88454 -36.40836 -36.01682 -35.03334 -32.83809 -32.18017 -31.89260 -28.97306 -26.47818 -26.35294 -25.26533 -23.60340 -22.62386 -22.26011 -21.49018 -20.68319 -19.37342 -18.84665 -17.81687 -17.42345 -17.14252 -16.75949 -16.53862 -16.13115 -15.86926 -15.73755 -15.21957 -14.98566 -14.73925 -14.31804 -14.13483 -13.98234 -13.63138 -13.25223 -13.18650 -13.04062 -12.82552 -12.67261 -12.43316 -12.15978 -11.92478 -11.86351 -11.72238 -11.58836 -11.22698 -11.14671 -10.92621 -10.83400 -10.32229 -10.09063 -9.26928 -8.03244 -5.35672 0.66241 1.33492 1.36969 1.39811 1.47287 1.54364 1.64351 2.23843 2.47437 3.27132 3.39296 3.58691 3.61691 3.65544 3.74190 3.79472 3.92504 4.09230 4.24303 4.27307 4.29129 4.34698 4.38179 4.47004 4.56354 4.65393 4.78304 4.88212 4.95617 4.97657 5.04087 5.21996 5.29358 5.33098 5.43226 5.64470 5.65742 5.77931 6.22679 6.48876 7.07737 7.16502 7.53028 7.86191 8.03651 9.18270 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031294 B = 0.002176 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.538600 B =12867.213908 C =12943.264761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.068 4.068 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.251 1.251 7 C -0.231 4.231 8 H 0.058 0.942 9 N -0.744 5.744 10 C 0.143 3.857 11 C -0.136 4.136 12 C -0.098 4.098 13 C 0.137 3.863 14 N -0.714 5.714 15 C 0.521 3.479 16 O -0.581 6.581 17 C -0.144 4.144 18 C 0.130 3.870 19 N -0.290 5.290 20 C -0.034 4.034 21 C -0.066 4.066 22 N -0.313 5.313 23 N -0.123 5.123 24 C -0.154 4.154 25 H 0.257 0.743 26 H 0.365 0.635 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.417 0.583 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.232 0.768 39 H 0.216 0.784 40 H 0.067 0.933 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.262 -10.143 -11.707 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.782 3.218 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.176 1.176 7 C -0.363 4.363 8 H 0.076 0.924 9 N -0.385 5.385 10 C 0.034 3.966 11 C -0.176 4.176 12 C -0.117 4.117 13 C 0.013 3.987 14 N -0.365 5.365 15 C 0.307 3.693 16 O -0.462 6.462 17 C -0.184 4.184 18 C 0.010 3.990 19 N -0.084 5.084 20 C -0.185 4.185 21 C -0.224 4.224 22 N -0.179 5.179 23 N -0.103 5.103 24 C -0.194 4.194 25 H 0.066 0.934 26 H 0.198 0.802 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.152 0.848 38 H 0.248 0.752 39 H 0.233 0.767 40 H 0.085 0.915 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 25.371 -10.693 -10.450 29.449 hybrid contribution -0.427 1.757 -0.705 1.940 sum 24.945 -8.936 -11.155 28.749 Atomic orbital electron populations 1.69881 1.07129 1.26610 1.59873 1.25536 0.96146 1.01314 1.02935 0.85412 0.78660 0.79723 0.77996 1.20611 1.22409 1.17596 1.19128 0.82899 0.93408 1.40828 0.92360 1.42786 1.02389 1.04074 1.89245 1.21978 0.90911 0.87887 0.95785 1.23356 0.95698 0.99820 0.98692 1.22467 0.91954 1.00741 0.96510 1.21262 0.95453 0.91279 0.90674 1.45925 1.21245 1.28736 1.40605 1.20546 0.80940 0.86080 0.81709 1.90735 1.52941 1.34983 1.67545 1.21784 0.97767 0.99864 0.99023 1.21948 0.97140 0.89115 0.90818 1.47716 1.42917 1.07038 1.10700 1.24442 1.05581 1.03964 0.84548 1.24253 1.06916 0.88974 1.02212 1.75080 1.16209 1.29004 0.97588 1.78247 1.20753 0.90238 1.21034 1.23762 0.96958 1.00476 0.98243 0.93424 0.80154 0.90667 0.90167 0.90408 0.86457 0.91313 0.92658 0.74673 0.86324 0.86453 0.87743 0.84822 0.75187 0.76703 0.91478 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.78 13.97 21.65 0.30 -62.48 16 2 C -0.07 -3.98 5.50 84.87 0.47 -3.51 16 3 Si 0.95 45.09 27.73 68.60 1.90 46.99 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 7 C -0.23 -12.93 10.45 84.03 0.88 -12.05 16 8 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 9 N -0.74 -33.32 5.21 -320.17 -1.67 -34.99 16 10 C 0.14 4.86 4.48 45.58 0.20 5.07 16 11 C -0.14 -3.43 7.40 31.12 0.23 -3.20 16 12 C -0.10 -1.90 3.75 -10.26 -0.04 -1.94 16 13 C 0.14 2.56 5.50 86.38 0.47 3.04 16 14 N -0.71 -10.31 5.56 -463.06 -2.57 -12.89 16 15 C 0.52 8.27 7.83 87.66 0.69 8.96 16 16 O -0.58 -13.70 15.98 -3.03 -0.05 -13.75 16 17 C -0.14 -1.41 5.82 29.85 0.17 -1.24 16 18 C 0.13 1.31 5.74 86.38 0.50 1.80 16 19 N -0.29 -3.93 3.44 -347.74 -1.20 -5.13 16 20 C -0.03 -0.32 11.57 83.49 0.97 0.65 16 21 C -0.07 -0.86 12.05 83.73 1.01 0.15 16 22 N -0.31 -6.79 12.41 -58.26 -0.72 -7.52 16 23 N -0.12 -2.55 12.91 37.02 0.48 -2.07 16 24 C -0.15 -4.16 7.45 31.18 0.23 -3.92 16 25 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.37 15.80 5.79 -92.70 -0.54 15.26 16 27 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 30 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.24 7.88 -2.39 -0.02 1.22 16 33 H 0.42 3.95 8.47 -92.71 -0.79 3.17 16 34 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.12 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.10 1.19 8.10 -2.39 -0.02 1.17 16 37 H 0.13 0.88 8.03 -2.39 -0.02 0.86 16 38 H 0.23 0.02 8.06 -2.91 -0.02 0.00 16 39 H 0.22 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.07 1.98 7.92 -2.39 -0.02 1.96 16 41 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -79.38 349.15 1.92 -77.46 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.33 Total: 20.58 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 5.78 Total: -6.21 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -5.38 Total: -125.07 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.05 Total: -13.75 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Total: -79.38 1.92 -77.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100278056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.152 kcal (2) G-P(sol) polarization free energy of solvation -79.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds