Wall clock time and date at job start Tue Mar 31 2020 03:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30835 * 125.96004 * 2 1 4 4 C 1.33235 * 109.83373 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.52890 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47464 * 89.99689 * 5 4 3 7 7 O 1.21283 * 119.99626 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00066 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00059 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47425 * 180.02562 * 9 8 6 11 11 C 1.53781 * 113.61609 * 175.00005 * 10 9 8 12 12 C 1.53781 * 87.08070 * 139.98229 * 11 10 9 13 13 N 1.46497 * 113.61305 * 219.93536 * 12 11 10 14 14 C 1.36944 * 119.99791 * 203.46713 * 13 12 11 15 15 H 1.07993 * 120.00042 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99770 * 179.97438 * 14 13 12 17 17 N 1.31615 * 119.99762 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00190 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47113 * 89.99658 * 18 16 14 20 20 H 1.48503 * 109.46988 * 209.99850 * 18 16 14 21 21 H 1.48501 * 109.46739 * 329.99844 * 18 16 14 22 22 C 1.53786 * 87.17350 * 334.52830 * 12 11 10 23 23 N 1.30715 * 108.94481 * 0.26232 * 4 3 2 24 24 N 1.34427 * 125.96731 * 180.02562 * 2 1 3 25 25 H 0.96999 * 126.81817 * 359.96885 * 24 2 1 26 26 H 1.09003 * 109.47239 * 89.97681 * 1 2 3 27 27 H 1.09009 * 109.46668 * 209.97100 * 1 2 3 28 28 H 1.08995 * 109.47516 * 329.97656 * 1 2 3 29 29 H 1.09005 * 109.47399 * 329.99438 * 5 4 3 30 30 H 1.09006 * 109.47109 * 210.00144 * 5 4 3 31 31 H 0.96996 * 120.00586 * 0.02562 * 8 6 5 32 32 H 1.08997 * 109.47114 * 60.00231 * 9 8 6 33 33 H 1.09006 * 109.47306 * 300.00712 * 9 8 6 34 34 H 1.08996 * 112.84723 * 43.80825 * 10 9 8 35 35 H 1.08999 * 113.61181 * 25.43284 * 11 10 9 36 36 H 1.08998 * 113.61680 * 254.52836 * 11 10 9 37 37 H 1.09002 * 113.61445 * 89.11830 * 12 11 10 38 38 H 0.96995 * 120.00146 * 23.47603 * 13 12 11 39 39 H 0.97005 * 119.99972 * 180.02562 * 17 16 14 40 40 H 1.08992 * 113.61675 * 140.02412 * 22 12 11 41 41 H 1.09000 * 113.60973 * 270.92699 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6889 -0.0006 5 6 4.7371 1.6239 -0.0002 6 6 5.1314 1.9346 1.4207 7 8 4.5138 1.4447 2.3423 8 7 6.1710 2.7561 1.6672 9 6 6.5547 3.0578 3.0485 10 6 7.7546 4.0071 3.0489 11 6 8.1622 4.4842 4.4528 12 6 9.6223 4.3252 3.9971 13 7 10.5004 3.7632 5.0264 14 6 11.8490 3.9956 4.9773 15 1 12.2653 4.5935 4.1801 16 6 12.6810 3.4636 5.9528 17 7 13.9771 3.6874 5.9059 18 14 11.9609 2.4300 7.3323 19 1 11.9411 1.0028 6.9228 20 1 12.7936 2.5835 8.5523 21 1 10.5756 2.8822 7.6182 22 6 9.1135 3.2842 2.9859 23 7 3.6195 -0.6166 -0.0066 24 7 2.2965 -1.0880 -0.0005 25 1 2.0094 -2.0145 -0.0005 26 1 -0.3634 0.0004 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3634 0.8897 0.5142 29 1 4.4698 2.5476 -0.5134 30 1 5.5741 1.1516 -0.5146 31 1 6.6652 3.1476 0.9301 32 1 6.8218 2.1338 3.5614 33 1 5.7179 3.5301 3.5632 34 1 7.6547 4.8157 2.3249 35 1 7.8756 3.7961 5.2481 36 1 7.8801 5.5160 4.6623 37 1 10.0345 5.2207 3.5320 38 1 10.1265 3.2265 5.7426 39 1 14.5585 3.3153 6.5874 40 1 9.5989 3.3479 2.0121 41 1 9.0865 2.2687 3.3810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100318443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:28 Heat of formation + Delta-G solvation = 75.519380 kcal Electronic energy + Delta-G solvation = -22195.027484 eV Core-core repulsion = 18726.587218 eV Total energy + Delta-G solvation = -3468.440265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.46134 -39.81358 -38.53739 -34.78854 -33.98190 -33.31805 -32.68992 -30.93090 -30.30964 -28.27548 -27.07295 -25.19174 -23.70450 -22.15523 -21.28853 -20.96671 -20.24393 -19.27101 -18.22160 -17.44545 -17.26727 -16.25054 -15.83608 -15.63894 -15.09398 -14.69548 -14.49932 -14.11096 -13.95439 -13.67458 -13.49813 -13.21959 -13.14455 -12.67591 -12.41054 -12.20106 -12.10650 -11.96727 -11.61080 -11.51598 -10.89593 -10.51970 -10.46810 -10.35802 -10.32148 -10.13640 -9.97631 -9.82608 -9.67525 -9.52869 -9.07750 -8.88529 -7.26406 -5.78126 -3.13487 1.26489 2.27751 2.44794 2.54553 3.19186 3.38171 3.41535 3.45981 3.62797 4.17206 4.38939 4.58673 4.66971 4.80607 4.88763 4.90261 4.92791 5.03745 5.12862 5.26168 5.31647 5.40820 5.42442 5.66247 5.74291 5.80713 5.86730 5.92002 6.08050 6.18619 6.19623 6.24592 6.39291 6.51602 6.69518 6.70778 6.99368 7.40214 7.77772 7.98495 8.12685 8.41764 9.19743 9.92608 10.12419 11.40062 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.002322 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.995793 B =12054.577391 C =12325.638943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.532 5.532 4 C 0.252 3.748 5 C -0.050 4.050 6 C 0.519 3.481 7 O -0.534 6.534 8 N -0.723 5.723 9 C 0.133 3.867 10 C -0.126 4.126 11 C -0.145 4.145 12 C 0.171 3.829 13 N -0.738 5.738 14 C -0.247 4.247 15 H 0.091 0.909 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.160 4.160 23 N -0.303 5.303 24 N -0.482 5.482 25 H 0.440 0.560 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.402 0.598 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.362 0.638 39 H 0.259 0.741 40 H 0.059 0.941 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.360 -5.526 -15.686 32.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.261 5.261 4 C -0.032 4.032 5 C -0.093 4.093 6 C 0.303 3.697 7 O -0.410 6.410 8 N -0.375 5.375 9 C 0.010 3.990 10 C -0.146 4.146 11 C -0.185 4.185 12 C 0.060 3.940 13 N -0.378 5.378 14 C -0.377 4.377 15 H 0.109 0.891 16 C -0.192 4.192 17 N -0.581 5.581 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.201 4.201 23 N -0.132 5.132 24 N -0.200 5.200 25 H 0.285 0.715 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.237 0.763 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.942 -5.811 -15.036 31.396 hybrid contribution -0.475 -1.321 0.705 1.571 sum -27.417 -7.131 -14.331 31.748 Atomic orbital electron populations 1.20397 0.83581 1.05158 1.04491 1.24371 0.96627 0.82772 0.95801 1.70287 1.01261 1.29588 1.24963 1.23241 0.92621 0.89741 0.97571 1.19908 0.93900 0.98995 0.96457 1.20149 0.80221 0.78840 0.90477 1.90739 1.52895 1.51202 1.46192 1.45944 1.32837 1.49013 1.09728 1.21427 0.96751 0.99013 0.81836 1.22690 0.94008 0.98389 0.99472 1.23446 0.98832 1.00926 0.95260 1.21514 0.87844 0.94961 0.89691 1.42769 1.04769 1.61384 1.28832 1.19135 0.81342 1.27666 1.09579 0.89128 1.24699 0.95261 1.00531 0.98692 1.69703 1.02383 1.49488 1.36477 0.86554 0.78309 0.80877 0.82836 1.21067 1.21704 1.20267 1.23958 0.94327 1.00522 1.01324 1.77995 0.96716 1.12220 1.26300 1.47929 1.04241 1.10041 1.57807 0.71471 0.88959 0.89839 0.88266 0.85915 0.86291 0.76349 0.91362 0.91698 0.88966 0.90368 0.91605 0.89884 0.80459 0.93048 0.92206 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.51 36.00 0.38 0.09 16 2 C 0.28 2.54 8.24 -155.70 -1.28 1.25 16 3 N -0.53 -6.49 11.19 -8.16 -0.09 -6.59 16 4 C 0.25 3.14 6.63 -156.86 -1.04 2.10 16 5 C -0.05 -0.48 6.33 -29.04 -0.18 -0.66 16 6 C 0.52 6.55 7.82 -10.99 -0.09 6.47 16 7 O -0.53 -9.30 16.03 5.56 0.09 -9.21 16 8 N -0.72 -7.65 5.56 -60.29 -0.33 -7.99 16 9 C 0.13 1.66 5.51 -4.04 -0.02 1.64 16 10 C -0.13 -1.56 3.76 -89.67 -0.34 -1.90 16 11 C -0.15 -2.15 7.39 -25.92 -0.19 -2.34 16 12 C 0.17 3.14 4.47 -67.12 -0.30 2.84 16 13 N -0.74 -17.32 5.21 -52.64 -0.27 -17.59 16 14 C -0.25 -6.95 10.45 -15.06 -0.16 -7.10 16 15 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 16 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 17 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 18 Si 0.88 22.30 27.74 -169.99 -4.71 17.58 16 19 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 22 C -0.16 -2.49 7.45 -25.77 -0.19 -2.68 16 23 N -0.30 -3.84 12.80 32.42 0.41 -3.42 16 24 N -0.48 -4.31 7.45 32.62 0.24 -4.07 16 25 H 0.44 2.19 8.96 -182.34 -1.63 0.56 16 26 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.08 0.13 8.14 -51.92 -0.42 -0.29 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.40 3.01 8.47 -40.82 -0.35 2.66 16 32 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 38 H 0.36 8.44 5.77 -40.82 -0.24 8.20 16 39 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.31 7.90 -51.93 -0.41 0.90 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -38.73 349.51 -9.41 -48.14 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.27 Total: 6.71 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -3.51 Total: -0.27 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: 0.73 Total: -68.21 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -38.73 -9.41 -48.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100318443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.656 kcal (2) G-P(sol) polarization free energy of solvation -38.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds