Wall clock time and date at job start Tue Mar 31 2020 03:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30835 * 125.96004 * 2 1 4 4 C 1.33235 * 109.83373 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.52890 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47464 * 89.99689 * 5 4 3 7 7 O 1.21283 * 119.99626 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00066 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00059 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47425 * 180.02562 * 9 8 6 11 11 C 1.53781 * 113.61609 * 175.00005 * 10 9 8 12 12 C 1.53781 * 87.08070 * 139.98229 * 11 10 9 13 13 N 1.46497 * 113.61305 * 219.93536 * 12 11 10 14 14 C 1.36944 * 119.99791 * 203.46713 * 13 12 11 15 15 H 1.07993 * 120.00042 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99770 * 179.97438 * 14 13 12 17 17 N 1.31615 * 119.99762 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00190 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47113 * 89.99658 * 18 16 14 20 20 H 1.48503 * 109.46988 * 209.99850 * 18 16 14 21 21 H 1.48501 * 109.46739 * 329.99844 * 18 16 14 22 22 C 1.53786 * 87.17350 * 334.52830 * 12 11 10 23 23 N 1.30715 * 108.94481 * 0.26232 * 4 3 2 24 24 N 1.34427 * 125.96731 * 180.02562 * 2 1 3 25 25 H 0.96999 * 126.81817 * 359.96885 * 24 2 1 26 26 H 1.09003 * 109.47239 * 89.97681 * 1 2 3 27 27 H 1.09009 * 109.46668 * 209.97100 * 1 2 3 28 28 H 1.08995 * 109.47516 * 329.97656 * 1 2 3 29 29 H 1.09005 * 109.47399 * 329.99438 * 5 4 3 30 30 H 1.09006 * 109.47109 * 210.00144 * 5 4 3 31 31 H 0.96996 * 120.00586 * 0.02562 * 8 6 5 32 32 H 1.08997 * 109.47114 * 60.00231 * 9 8 6 33 33 H 1.09006 * 109.47306 * 300.00712 * 9 8 6 34 34 H 1.08996 * 112.84723 * 43.80825 * 10 9 8 35 35 H 1.08999 * 113.61181 * 25.43284 * 11 10 9 36 36 H 1.08998 * 113.61680 * 254.52836 * 11 10 9 37 37 H 1.09002 * 113.61445 * 89.11830 * 12 11 10 38 38 H 0.96995 * 120.00146 * 23.47603 * 13 12 11 39 39 H 0.97005 * 119.99972 * 180.02562 * 17 16 14 40 40 H 1.08992 * 113.61675 * 140.02412 * 22 12 11 41 41 H 1.09000 * 113.60973 * 270.92699 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6889 -0.0006 5 6 4.7371 1.6239 -0.0002 6 6 5.1314 1.9346 1.4207 7 8 4.5138 1.4447 2.3423 8 7 6.1710 2.7561 1.6672 9 6 6.5547 3.0578 3.0485 10 6 7.7546 4.0071 3.0489 11 6 8.1622 4.4842 4.4528 12 6 9.6223 4.3252 3.9971 13 7 10.5004 3.7632 5.0264 14 6 11.8490 3.9956 4.9773 15 1 12.2653 4.5935 4.1801 16 6 12.6810 3.4636 5.9528 17 7 13.9771 3.6874 5.9059 18 14 11.9609 2.4300 7.3323 19 1 11.9411 1.0028 6.9228 20 1 12.7936 2.5835 8.5523 21 1 10.5756 2.8822 7.6182 22 6 9.1135 3.2842 2.9859 23 7 3.6195 -0.6166 -0.0066 24 7 2.2965 -1.0880 -0.0005 25 1 2.0094 -2.0145 -0.0005 26 1 -0.3634 0.0004 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3634 0.8897 0.5142 29 1 4.4698 2.5476 -0.5134 30 1 5.5741 1.1516 -0.5146 31 1 6.6652 3.1476 0.9301 32 1 6.8218 2.1338 3.5614 33 1 5.7179 3.5301 3.5632 34 1 7.6547 4.8157 2.3249 35 1 7.8756 3.7961 5.2481 36 1 7.8801 5.5160 4.6623 37 1 10.0345 5.2207 3.5320 38 1 10.1265 3.2265 5.7426 39 1 14.5585 3.3153 6.5874 40 1 9.5989 3.3479 2.0121 41 1 9.0865 2.2687 3.3810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100318443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:26 Heat of formation + Delta-G solvation = 45.293073 kcal Electronic energy + Delta-G solvation = -22196.338195 eV Core-core repulsion = 18726.587218 eV Total energy + Delta-G solvation = -3469.750976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.18810 -40.85776 -39.79788 -36.13261 -35.01729 -34.69316 -33.37440 -32.77976 -31.21287 -28.98845 -28.14580 -26.45403 -25.53184 -23.06377 -22.34089 -22.01020 -21.24649 -20.61467 -19.35645 -18.92469 -18.20238 -17.32860 -16.70923 -16.58115 -16.47358 -16.06093 -15.80069 -15.29278 -14.80535 -14.72317 -14.55419 -14.43975 -13.94667 -13.65354 -13.62679 -13.30347 -13.24310 -13.04649 -12.99517 -12.76175 -12.64640 -12.15394 -11.91859 -11.71261 -11.57635 -11.30559 -11.13587 -11.11005 -10.91493 -10.83514 -10.47324 -10.07229 -9.25835 -8.02658 -5.34584 0.54769 1.36974 1.39247 1.46430 1.60089 1.62597 1.73116 2.34683 2.47531 3.00578 3.27876 3.52578 3.60832 3.70669 3.77994 3.85733 4.02781 4.11655 4.29830 4.39739 4.40396 4.42626 4.57569 4.69897 4.74096 4.79806 4.97005 4.98880 5.04231 5.05949 5.22253 5.24521 5.33888 5.35279 5.45572 5.68488 5.78986 6.18584 6.23558 6.55926 7.04356 7.08387 7.24488 7.87228 8.04400 9.18807 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.002322 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.995793 B =12054.577391 C =12325.638943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.568 5.568 4 C 0.235 3.765 5 C -0.046 4.046 6 C 0.518 3.482 7 O -0.588 6.588 8 N -0.709 5.709 9 C 0.138 3.862 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.145 3.855 13 N -0.745 5.745 14 C -0.229 4.229 15 H 0.061 0.939 16 C -0.067 4.067 17 N -0.984 5.984 18 Si 0.952 3.048 19 H -0.282 1.282 20 H -0.296 1.296 21 H -0.253 1.253 22 C -0.155 4.155 23 N -0.342 5.342 24 N -0.476 5.476 25 H 0.454 0.546 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.420 0.580 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.364 0.636 39 H 0.257 0.743 40 H 0.069 0.931 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.229 -5.624 -16.719 34.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.298 5.298 4 C -0.049 4.049 5 C -0.087 4.087 6 C 0.304 3.696 7 O -0.468 6.468 8 N -0.361 5.361 9 C 0.014 3.986 10 C -0.114 4.114 11 C -0.176 4.176 12 C 0.036 3.964 13 N -0.386 5.386 14 C -0.360 4.360 15 H 0.079 0.921 16 C -0.258 4.258 17 N -0.634 5.634 18 Si 0.780 3.220 19 H -0.209 1.209 20 H -0.223 1.223 21 H -0.178 1.178 22 C -0.195 4.195 23 N -0.172 5.172 24 N -0.196 5.196 25 H 0.303 0.697 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.170 0.830 30 H 0.161 0.839 31 H 0.258 0.742 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.197 0.803 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.869 -5.899 -16.135 34.457 hybrid contribution 0.352 -1.255 0.919 1.595 sum -29.516 -7.155 -15.216 33.970 Atomic orbital electron populations 1.20648 0.80053 1.06343 1.06268 1.25270 0.98347 0.82044 0.93627 1.70294 1.01629 1.31235 1.26691 1.23751 0.93576 0.90102 0.97428 1.20043 0.94008 1.00134 0.94549 1.20674 0.79697 0.78007 0.91219 1.90714 1.54771 1.53311 1.48011 1.45786 1.32355 1.48360 1.09611 1.21228 0.96592 0.97980 0.82763 1.22523 0.91983 0.98289 0.98591 1.23347 0.95610 1.02093 0.96570 1.21958 0.88957 0.95657 0.89827 1.42822 1.03510 1.62004 1.30307 1.19140 0.83520 1.25469 1.07885 0.92093 1.25496 0.95625 1.02859 1.01863 1.69877 1.04007 1.51749 1.37803 0.85449 0.78485 0.78934 0.79162 1.20869 1.22277 1.17769 1.23783 0.96168 0.99021 1.00550 1.77875 0.98887 1.12743 1.27667 1.47877 1.03304 1.11030 1.57438 0.69717 0.86702 0.87241 0.88414 0.83034 0.83917 0.74192 0.93506 0.91738 0.85767 0.90826 0.89876 0.90260 0.80292 0.93450 0.91273 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.51 71.23 0.75 0.36 16 2 C 0.28 4.73 8.24 138.22 1.14 5.87 16 3 N -0.57 -13.36 11.19 -179.74 -2.01 -15.37 16 4 C 0.23 5.66 6.63 138.63 0.92 6.58 16 5 C -0.05 -0.78 6.33 29.10 0.18 -0.60 16 6 C 0.52 12.32 7.82 87.66 0.69 13.01 16 7 O -0.59 -20.34 16.03 -3.04 -0.05 -20.39 16 8 N -0.71 -13.21 5.56 -463.06 -2.57 -15.78 16 9 C 0.14 3.16 5.51 86.38 0.48 3.63 16 10 C -0.09 -2.05 3.76 -10.18 -0.04 -2.09 16 11 C -0.14 -3.70 7.39 31.12 0.23 -3.47 16 12 C 0.14 5.11 4.47 45.52 0.20 5.31 16 13 N -0.75 -34.51 5.21 -320.44 -1.67 -36.18 16 14 C -0.23 -13.03 10.45 84.03 0.88 -12.15 16 15 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 16 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 17 N -0.98 -63.56 13.97 21.65 0.30 -63.26 16 18 Si 0.95 46.42 27.74 68.60 1.90 48.32 16 19 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 20 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 21 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 22 C -0.15 -4.50 7.45 31.21 0.23 -4.27 16 23 N -0.34 -8.49 12.80 -51.34 -0.66 -9.14 16 24 N -0.48 -8.07 7.45 -50.71 -0.38 -8.45 16 25 H 0.45 4.02 8.96 -213.10 -1.91 2.11 16 26 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.15 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.42 4.77 8.47 -92.71 -0.79 3.99 16 32 H 0.05 1.30 7.85 -2.39 -0.02 1.28 16 33 H 0.06 1.53 8.14 -2.38 -0.02 1.52 16 34 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 38 H 0.36 16.45 5.77 -92.71 -0.53 15.91 16 39 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 2.03 7.90 -2.39 -0.02 2.01 16 Total: -1.00 -87.37 349.51 -1.22 -88.59 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -2.21 Total: 22.99 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 6.13 Total: 8.66 kcal Atomic # 7 Polarization: -141.19 SS G_CDS: -6.99 Total: -148.18 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.90 Total: 48.32 kcal Total: -87.37 -1.22 -88.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100318443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.887 kcal (2) G-P(sol) polarization free energy of solvation -87.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds