Wall clock time and date at job start Tue Mar 31 2020 03:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1 5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47090 * 179.97438 * 18 17 15 20 20 C 1.35345 * 126.91344 * 274.68565 * 19 18 17 21 21 N 1.33770 * 106.49971 * 179.90759 * 20 19 18 22 22 N 1.28640 * 108.88419 * 0.36553 * 21 20 19 23 23 N 1.28717 * 110.17854 * 359.76731 * 22 21 20 24 24 H 0.96990 * 125.87127 * 180.02562 * 23 22 21 25 25 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 26 26 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 28 28 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 29 29 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 30 30 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 31 31 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 32 32 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 33 33 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 34 34 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 35 35 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 36 36 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 37 37 H 1.09005 * 109.46587 * 299.99693 * 18 17 15 38 38 H 1.08995 * 109.46937 * 59.99982 * 18 17 15 39 39 H 1.07998 * 126.75074 * 0.03468 * 20 19 18 40 40 H 1.08999 * 113.61567 * 334.48111 * 25 10 9 41 41 H 1.08998 * 113.61196 * 105.38466 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 6 0.6448 -10.3106 4.4801 19 6 1.3703 -11.1802 5.4743 20 6 2.0465 -12.3233 5.2133 21 7 2.5289 -12.7550 6.3839 22 7 2.1685 -11.9378 7.3097 23 7 1.4718 -10.9785 6.8085 24 1 1.0862 -10.2380 7.3023 25 6 1.2469 -4.8365 -0.5606 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 3.0560 -3.5693 -0.4293 29 1 2.9742 -4.3216 1.9018 30 1 1.1688 -4.1300 1.9705 31 1 2.8060 -6.1607 0.2828 32 1 0.0882 -6.1151 1.7060 33 1 0.4334 -7.2968 0.4205 34 1 2.5317 -7.3971 2.3080 35 1 2.4196 -9.8859 3.3348 36 1 2.0731 -8.7043 4.6201 37 1 -0.1422 -9.7545 4.9895 38 1 0.2038 -10.9365 3.7044 39 1 2.1734 -12.7932 4.2492 40 1 0.1684 -4.7076 -0.4690 41 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100689905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:04 Heat of formation + Delta-G solvation = 74.539566 kcal Electronic energy + Delta-G solvation = -21936.165261 eV Core-core repulsion = 18467.682508 eV Total energy + Delta-G solvation = -3468.482753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.71773 -40.02546 -38.55518 -35.06650 -34.66425 -33.57579 -33.33724 -30.73728 -30.12880 -27.63141 -25.22054 -25.10477 -23.78608 -23.36990 -22.09394 -21.12389 -20.58371 -19.11916 -18.68872 -17.35770 -17.04671 -16.49891 -16.19206 -16.04791 -15.04683 -14.93158 -14.73959 -14.53841 -14.10411 -13.73557 -13.52444 -13.18454 -12.94284 -12.81597 -12.19282 -11.96958 -11.88313 -11.78372 -11.43951 -11.28879 -11.25350 -11.00486 -10.88456 -10.58882 -10.36239 -10.19655 -10.02022 -9.87779 -9.61528 -9.50676 -9.14684 -8.91481 -7.01042 -5.82628 -3.11737 1.09981 2.13069 2.29794 2.41641 3.00299 3.39316 3.44517 3.46301 3.98244 4.20402 4.37687 4.48375 4.54156 4.69714 4.77473 4.88802 4.93407 4.99901 5.04358 5.16679 5.41509 5.43288 5.45448 5.47480 5.70594 5.74750 5.77232 5.86440 6.03849 6.16874 6.24395 6.29146 6.36371 6.38561 6.52593 6.76008 7.05202 7.31424 7.64786 8.01508 8.02472 8.35902 9.46968 10.04984 10.39013 11.39661 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.002061 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.320250 B =13581.112310 C =13928.399679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.165 3.835 11 C -0.161 4.161 12 C -0.128 4.128 13 C 0.131 3.869 14 N -0.724 5.724 15 C 0.510 3.490 16 O -0.543 6.543 17 C -0.138 4.138 18 C -0.033 4.033 19 C -0.007 4.007 20 C -0.046 4.046 21 N -0.266 5.266 22 N -0.083 5.083 23 N -0.389 5.389 24 H 0.448 0.552 25 C -0.142 4.142 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.401 0.599 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.192 0.808 40 H 0.081 0.919 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 -21.916 8.132 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.053 3.947 11 C -0.202 4.202 12 C -0.147 4.147 13 C 0.008 3.992 14 N -0.375 5.375 15 C 0.296 3.704 16 O -0.421 6.421 17 C -0.179 4.179 18 C -0.073 4.073 19 C -0.141 4.141 20 C -0.204 4.204 21 N -0.133 5.133 22 N -0.063 5.063 23 N -0.110 5.110 24 H 0.294 0.706 25 C -0.182 4.182 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.235 0.765 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.209 0.791 40 H 0.099 0.901 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.778 -22.548 9.215 24.649 hybrid contribution -0.068 1.967 -0.541 2.041 sum 3.710 -20.581 8.674 22.640 Atomic orbital electron populations 1.69659 1.05137 1.25786 1.57393 1.24781 0.95540 0.97827 1.02807 0.86185 0.78647 0.83773 0.77543 1.21664 1.21753 1.20746 1.19295 0.91063 0.84234 1.43005 0.91099 1.42413 1.05759 0.99884 1.87053 1.21519 0.95252 0.85084 0.92815 1.23998 1.01240 0.94815 1.00153 1.22692 0.98447 0.94460 0.99086 1.21462 0.95036 0.91849 0.90866 1.46077 1.12950 1.36055 1.42378 1.20488 0.87655 0.80717 0.81585 1.90735 1.15226 1.69660 1.66467 1.21669 0.99502 0.97955 0.98750 1.19881 0.96089 0.95733 0.95605 1.22351 1.05668 1.00506 0.85547 1.23474 1.01798 0.95864 0.99223 1.75126 1.19270 1.21024 0.97908 1.78323 1.09870 0.96228 1.21879 1.45181 1.37171 1.21609 1.07029 0.70600 1.23427 1.00914 0.97053 0.96759 0.93425 0.78068 0.90756 0.92797 0.90374 0.89360 0.91179 0.91668 0.76493 0.88080 0.88809 0.89350 0.87678 0.79125 0.90087 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.34 5.41 -52.64 -0.28 -17.62 16 10 C 0.17 3.06 4.47 -67.12 -0.30 2.76 16 11 C -0.16 -2.49 7.45 -25.77 -0.19 -2.68 16 12 C -0.13 -1.54 3.76 -89.67 -0.34 -1.88 16 13 C 0.13 1.51 5.51 -4.04 -0.02 1.49 16 14 N -0.72 -6.53 5.56 -60.29 -0.33 -6.86 16 15 C 0.51 4.79 7.83 -10.99 -0.09 4.70 16 16 O -0.54 -7.34 15.98 5.56 0.09 -7.25 16 17 C -0.14 -0.72 5.68 -27.88 -0.16 -0.88 16 18 C -0.03 -0.18 5.07 -27.88 -0.14 -0.32 16 19 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 20 C -0.05 -0.35 11.99 -17.74 -0.21 -0.56 16 21 N -0.27 -2.82 12.41 30.23 0.38 -2.44 16 22 N -0.08 -0.81 13.38 60.35 0.81 -0.01 16 23 N -0.39 -2.46 6.98 33.54 0.23 -2.23 16 24 H 0.45 1.33 8.96 -190.41 -1.71 -0.38 16 25 C -0.14 -2.12 7.39 -25.92 -0.19 -2.31 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.39 10.00 7.91 -40.82 -0.32 9.68 16 28 H 0.07 1.37 8.11 -51.93 -0.42 0.94 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.35 7.90 -51.93 -0.41 0.94 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 2.63 8.47 -40.82 -0.35 2.28 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 38 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -34.71 351.34 -7.92 -42.63 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.38 Total: 6.08 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.43 Total: -7.53 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 1.52 Total: -56.20 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.09 Total: -7.25 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.71 -7.92 -42.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100689905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.171 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds