Wall clock time and date at job start Tue Mar 31 2020 03:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1 5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47090 * 179.97438 * 18 17 15 20 20 C 1.35345 * 126.91344 * 274.68565 * 19 18 17 21 21 N 1.33770 * 106.49971 * 179.90759 * 20 19 18 22 22 N 1.28640 * 108.88419 * 0.36553 * 21 20 19 23 23 N 1.28717 * 110.17854 * 359.76731 * 22 21 20 24 24 H 0.96990 * 125.87127 * 180.02562 * 23 22 21 25 25 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 26 26 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 28 28 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 29 29 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 30 30 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 31 31 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 32 32 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 33 33 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 34 34 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 35 35 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 36 36 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 37 37 H 1.09005 * 109.46587 * 299.99693 * 18 17 15 38 38 H 1.08995 * 109.46937 * 59.99982 * 18 17 15 39 39 H 1.07998 * 126.75074 * 0.03468 * 20 19 18 40 40 H 1.08999 * 113.61567 * 334.48111 * 25 10 9 41 41 H 1.08998 * 113.61196 * 105.38466 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 6 0.6448 -10.3106 4.4801 19 6 1.3703 -11.1802 5.4743 20 6 2.0465 -12.3233 5.2133 21 7 2.5289 -12.7550 6.3839 22 7 2.1685 -11.9378 7.3097 23 7 1.4718 -10.9785 6.8085 24 1 1.0862 -10.2380 7.3023 25 6 1.2469 -4.8365 -0.5606 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 3.0560 -3.5693 -0.4293 29 1 2.9742 -4.3216 1.9018 30 1 1.1688 -4.1300 1.9705 31 1 2.8060 -6.1607 0.2828 32 1 0.0882 -6.1151 1.7060 33 1 0.4334 -7.2968 0.4205 34 1 2.5317 -7.3971 2.3080 35 1 2.4196 -9.8859 3.3348 36 1 2.0731 -8.7043 4.6201 37 1 -0.1422 -9.7545 4.9895 38 1 0.2038 -10.9365 3.7044 39 1 2.1734 -12.7932 4.2492 40 1 0.1684 -4.7076 -0.4690 41 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100689905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:04 Heat of formation + Delta-G solvation = 47.932348 kcal Electronic energy + Delta-G solvation = -21937.319036 eV Core-core repulsion = 18467.682508 eV Total energy + Delta-G solvation = -3469.636529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.28520 -40.87182 -39.76632 -36.08253 -35.40777 -34.96581 -34.13639 -32.22701 -31.07942 -28.70717 -26.44282 -26.18339 -25.29351 -23.96825 -22.72279 -22.31340 -21.40142 -20.39955 -19.23211 -19.03769 -18.02730 -17.23033 -17.00921 -16.76047 -16.51696 -16.10762 -15.56936 -15.40995 -15.10275 -15.07790 -14.75692 -14.23905 -13.96524 -13.43297 -13.26044 -13.21986 -13.00625 -12.89884 -12.73530 -12.63088 -12.28747 -12.18316 -12.07154 -11.78804 -11.59205 -11.57596 -11.54308 -11.08577 -10.87505 -10.77309 -10.14087 -10.00591 -8.96924 -7.94513 -5.22634 0.56361 1.47412 1.48879 1.54174 1.57171 1.70480 1.86171 2.30061 2.56815 3.37356 3.46883 3.69494 3.74619 3.78219 3.90226 3.93205 4.05173 4.21662 4.27849 4.32168 4.37770 4.45406 4.51523 4.59923 4.65629 4.83064 4.99581 5.00967 5.03163 5.07237 5.09121 5.22393 5.24912 5.39854 5.47750 5.55477 5.75969 5.98034 6.28040 6.63341 7.32671 7.33449 7.43771 8.12519 8.33589 9.28930 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.002061 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.320250 B =13581.112310 C =13928.399679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.731 5.731 10 C 0.140 3.860 11 C -0.153 4.153 12 C -0.094 4.094 13 C 0.138 3.862 14 N -0.716 5.716 15 C 0.508 3.492 16 O -0.589 6.589 17 C -0.127 4.127 18 C -0.026 4.026 19 C 0.009 3.991 20 C -0.053 4.053 21 N -0.304 5.304 22 N -0.114 5.114 23 N -0.376 5.376 24 H 0.461 0.539 25 C -0.138 4.138 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.122 0.878 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.417 0.583 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.216 0.784 40 H 0.066 0.934 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 -23.087 8.106 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.368 5.368 10 C 0.031 3.969 11 C -0.193 4.193 12 C -0.113 4.113 13 C 0.013 3.987 14 N -0.368 5.368 15 C 0.296 3.704 16 O -0.469 6.469 17 C -0.167 4.167 18 C -0.066 4.066 19 C -0.126 4.126 20 C -0.211 4.211 21 N -0.170 5.170 22 N -0.094 5.094 23 N -0.099 5.099 24 H 0.310 0.690 25 C -0.177 4.177 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.140 0.860 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.254 0.746 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.232 0.768 40 H 0.084 0.916 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.830 -23.764 9.225 26.150 hybrid contribution -0.685 2.275 -0.569 2.443 sum 5.144 -21.489 8.655 23.731 Atomic orbital electron populations 1.69822 1.06682 1.25970 1.59812 1.25601 0.96386 1.01253 1.04069 0.85143 0.77737 0.79538 0.77381 1.21484 1.22532 1.19234 1.19727 0.91596 0.85390 1.40551 0.90297 1.42643 1.05348 1.01267 1.87581 1.21989 0.95566 0.83888 0.95443 1.23756 1.00988 0.96122 0.98452 1.22509 0.99518 0.93014 0.96235 1.21180 0.94470 0.91816 0.91201 1.45957 1.13659 1.35458 1.41694 1.21172 0.87187 0.80507 0.81519 1.90726 1.17399 1.70906 1.67901 1.21656 0.99366 0.97525 0.98166 1.19833 0.95955 0.95574 0.95278 1.22406 1.04780 1.00042 0.85385 1.23978 1.01456 0.96217 0.99442 1.75088 1.20675 1.22117 0.99118 1.78272 1.11418 0.97313 1.22370 1.45219 1.36111 1.21265 1.07315 0.69022 1.23315 0.99745 0.95979 0.98667 0.94148 0.79682 0.90301 0.91376 0.92685 0.85962 0.93735 0.91682 0.74645 0.85577 0.86952 0.89543 0.87655 0.76775 0.91568 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.42 13.06 21.65 0.28 -59.14 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 3 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.24 -13.08 9.97 84.03 0.84 -12.24 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.73 -35.92 5.41 -320.44 -1.73 -37.65 16 10 C 0.14 5.05 4.47 45.52 0.20 5.25 16 11 C -0.15 -4.47 7.45 31.21 0.23 -4.23 16 12 C -0.09 -2.00 3.76 -10.18 -0.04 -2.04 16 13 C 0.14 2.92 5.51 86.38 0.48 3.40 16 14 N -0.72 -10.79 5.56 -463.06 -2.57 -13.36 16 15 C 0.51 8.28 7.83 87.66 0.69 8.97 16 16 O -0.59 -15.19 15.98 -3.04 -0.05 -15.23 16 17 C -0.13 -0.89 5.68 29.85 0.17 -0.72 16 18 C -0.03 -0.21 5.07 29.85 0.15 -0.06 16 19 C 0.01 0.09 6.56 41.35 0.27 0.36 16 20 C -0.05 -0.69 11.99 83.73 1.00 0.32 16 21 N -0.30 -6.17 12.41 -58.26 -0.72 -6.89 16 22 N -0.11 -2.15 13.38 37.02 0.50 -1.65 16 23 N -0.38 -4.15 6.98 -47.79 -0.33 -4.48 16 24 H 0.46 1.97 8.96 -219.97 -1.97 -0.01 16 25 C -0.14 -3.92 7.39 31.12 0.23 -3.69 16 26 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.37 19.92 7.91 -92.71 -0.73 19.19 16 28 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.89 7.90 -2.39 -0.02 1.87 16 31 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.04 1.20 7.85 -2.39 -0.02 1.18 16 33 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.42 3.73 8.47 -92.71 -0.79 2.94 16 35 H 0.13 0.34 8.14 -2.38 -0.02 0.33 16 36 H 0.11 0.45 8.14 -2.38 -0.02 0.44 16 37 H 0.09 0.78 8.10 -2.38 -0.02 0.76 16 38 H 0.11 0.92 8.10 -2.39 -0.02 0.91 16 39 H 0.22 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -77.43 351.34 -0.33 -77.76 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -2.42 Total: 21.93 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 4.69 Total: -8.85 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -4.58 Total: -123.18 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.05 Total: -15.23 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -77.43 -0.33 -77.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100689905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.694 kcal (2) G-P(sol) polarization free energy of solvation -77.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds