Wall clock time and date at job start Tue Mar 31 2020 03:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 C 1.50700 * 109.47208 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27843 * 4 3 2 7 7 C 1.47062 * 136.06053 * 359.34957 * 6 4 3 8 8 C 1.53749 * 87.88863 * 152.96825 * 7 6 4 9 9 N 1.46503 * 114.57496 * 272.66550 * 8 7 6 10 10 C 1.35308 * 125.86797 * 8.38571 * 9 8 7 11 11 C 1.35350 * 106.17900 * 179.90634 * 10 9 8 12 12 C 1.50693 * 126.75684 * 180.12700 * 11 10 9 13 13 N 1.46504 * 109.47283 * 95.29099 * 12 11 10 14 14 C 1.36941 * 120.00165 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99777 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99937 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00256 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99698 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47109 * 59.99773 * 18 16 14 20 20 H 1.48499 * 109.46791 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47173 * 299.99512 * 18 16 14 22 22 N 1.33773 * 106.49264 * 0.35015 * 11 10 9 23 23 N 1.28638 * 108.88551 * 359.77771 * 22 11 10 24 24 C 1.47070 * 136.05212 * 179.73146 * 6 4 3 25 25 H 1.09001 * 109.47109 * 60.00906 * 1 2 3 26 26 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 28 28 H 1.09000 * 109.47849 * 239.99917 * 2 1 3 29 29 H 1.08998 * 109.47443 * 119.99785 * 2 1 3 30 30 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 31 31 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 32 32 H 1.08998 * 113.46736 * 267.69995 * 7 6 4 33 33 H 1.08998 * 113.46422 * 38.13624 * 7 6 4 34 34 H 1.08999 * 114.08757 * 139.78257 * 8 7 6 35 35 H 1.08002 * 126.91258 * 0.02562 * 10 9 8 36 36 H 1.08997 * 109.47605 * 215.29741 * 12 11 10 37 37 H 1.08997 * 109.47097 * 335.29666 * 12 11 10 38 38 H 0.97003 * 119.99782 * 0.02562 * 13 12 11 39 39 H 0.97000 * 120.00348 * 180.02562 * 17 16 14 40 40 H 1.08996 * 113.46675 * 321.85429 * 24 6 4 41 41 H 1.08990 * 113.47047 * 92.24216 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2207 2.6099 0.0064 7 6 3.8664 4.0371 0.0014 8 6 5.2011 4.3126 0.7132 9 7 5.1438 4.2166 2.1739 10 6 4.0947 3.7630 2.8981 11 6 4.4690 3.8445 4.1962 12 6 3.6478 3.4539 5.3978 13 7 3.9868 2.0857 5.7971 14 6 3.3623 1.5115 6.8721 15 1 2.6197 2.0672 7.4253 16 6 3.6839 0.2153 7.2507 17 7 4.5886 -0.4621 6.5762 18 14 2.8326 -0.5676 8.7176 19 1 1.3690 -0.6183 8.4715 20 1 3.3495 -1.9461 8.9121 21 1 3.1022 0.2390 9.9349 22 7 5.7097 4.3448 4.2030 23 7 6.0807 4.5545 2.9892 24 6 5.6340 3.0166 0.0137 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.8110 4.4671 -0.9987 33 1 2.9923 4.2694 0.6097 34 1 5.7176 5.2051 0.3600 35 1 3.1494 3.4058 2.5168 36 1 3.8608 4.1359 6.2209 37 1 2.5885 3.5071 5.1468 38 1 4.6536 1.5865 5.2999 39 1 4.8131 -1.3679 6.8406 40 1 6.2659 2.3796 0.6326 41 1 6.0448 3.1766 -0.9830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105137134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:54 Heat of formation + Delta-G solvation = 118.488275 kcal Electronic energy + Delta-G solvation = -23580.277014 eV Core-core repulsion = 20113.700020 eV Total energy + Delta-G solvation = -3466.576994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.14256 -40.68606 -38.41404 -34.94873 -34.49880 -33.30204 -31.78128 -30.24322 -29.85405 -27.76508 -26.65631 -25.74225 -24.05513 -22.78753 -21.97543 -21.03889 -20.59865 -19.25435 -17.59097 -17.46469 -16.96013 -16.25753 -16.21615 -15.87082 -15.13099 -14.70678 -14.52050 -13.87944 -13.74512 -13.69257 -13.39163 -13.24474 -13.01619 -12.74533 -12.60754 -12.21897 -11.96506 -11.89371 -11.55179 -11.31821 -11.26598 -10.87389 -10.86897 -10.76936 -10.49839 -10.11272 -10.03528 -9.86803 -9.69686 -9.20613 -8.86651 -8.82275 -6.88471 -5.69175 -2.99693 1.73575 2.21015 2.32818 2.46729 2.88716 3.43243 3.48874 3.52902 3.54709 3.86718 4.31310 4.44846 4.64374 4.68366 4.68592 4.75401 4.79092 4.82298 5.06623 5.09379 5.23096 5.27020 5.34599 5.36523 5.44693 5.47451 5.62429 5.65302 5.80401 5.92635 6.04498 6.19866 6.22376 6.38732 6.64002 6.72400 6.78203 7.29043 7.73633 7.92179 8.47204 8.80464 9.58773 10.14458 10.50159 11.53241 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.005037 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.657337 B = 5557.135366 C = 7306.298905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.132 4.132 4 C 0.544 3.456 5 O -0.523 6.523 6 N -0.654 5.654 7 C 0.099 3.901 8 C 0.104 3.896 9 N -0.283 5.283 10 C -0.036 4.036 11 C -0.003 4.003 12 C 0.233 3.767 13 N -0.725 5.725 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.011 4.011 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.285 1.285 22 N -0.250 5.250 23 N -0.091 5.091 24 C 0.097 3.903 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.180 0.820 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.091 0.909 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 11.270 -20.877 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.172 4.172 4 C 0.335 3.665 5 O -0.397 6.397 6 N -0.393 5.393 7 C -0.025 4.025 8 C 0.000 4.000 9 N -0.077 5.077 10 C -0.186 4.186 11 C -0.140 4.140 12 C 0.104 3.896 13 N -0.370 5.370 14 C -0.373 4.373 15 H 0.090 0.910 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 N -0.117 5.117 23 N -0.069 5.069 24 C -0.027 4.027 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.161 0.839 35 H 0.197 0.803 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.609 10.981 -20.596 23.792 hybrid contribution -1.203 -1.057 0.295 1.629 sum -5.813 9.924 -20.301 23.333 Atomic orbital electron populations 1.21776 0.95220 1.02187 1.01709 1.21318 0.95534 0.94266 1.03922 1.21682 0.90431 1.00756 1.04286 1.20484 0.90049 0.81097 0.74872 1.90770 1.70386 1.29923 1.48623 1.49747 1.08709 1.05298 1.75511 1.23428 0.97068 0.80629 1.01367 1.22723 1.00308 1.01248 0.75717 1.46709 1.11271 1.42814 1.06921 1.23166 0.96094 1.07408 0.91953 1.22464 0.93444 1.02720 0.95421 1.18941 0.93187 0.88721 0.88763 1.42300 1.49094 1.09838 1.35782 1.19162 1.16821 0.96224 1.05137 0.90962 1.24767 0.99406 0.97098 0.99518 1.69675 1.34893 1.11510 1.41728 0.86244 0.78802 0.78422 0.82549 1.21246 1.21726 1.21170 1.75110 1.11545 1.14647 1.10405 1.78287 1.14013 1.19948 0.94669 1.23365 0.85640 0.92504 1.01183 0.92946 0.92244 0.92328 0.91400 0.90568 0.88654 0.89037 0.86666 0.88805 0.83931 0.80255 0.94291 0.94637 0.78095 0.93421 0.89061 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.11 -1.22 5.22 -26.73 -0.14 -1.36 16 3 C -0.13 -1.23 5.53 -27.88 -0.15 -1.38 16 4 C 0.54 6.98 8.08 -10.98 -0.09 6.89 16 5 O -0.52 -9.38 16.76 5.55 0.09 -9.29 16 6 N -0.65 -6.37 3.43 -185.08 -0.63 -7.01 16 7 C 0.10 0.52 7.60 -8.37 -0.06 0.45 16 8 C 0.10 0.81 5.36 -67.68 -0.36 0.44 16 9 N -0.28 -3.84 3.56 -54.44 -0.19 -4.04 16 10 C -0.04 -0.55 10.40 -17.05 -0.18 -0.73 16 11 C 0.00 -0.06 6.61 -82.78 -0.55 -0.60 16 12 C 0.23 4.99 6.82 -5.19 -0.04 4.95 16 13 N -0.73 -19.50 5.59 -61.09 -0.34 -19.84 16 14 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 15 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -29.51 13.06 55.49 0.72 -28.79 16 18 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 N -0.25 -5.12 12.41 33.29 0.41 -4.71 16 23 N -0.09 -1.58 13.17 60.35 0.79 -0.79 16 24 C 0.10 0.86 8.42 -8.50 -0.07 0.78 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.76 8.10 -51.93 -0.42 0.33 16 29 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 30 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.44 7.00 -51.93 -0.36 0.08 16 34 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.18 2.23 7.22 -52.49 -0.38 1.85 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.39 11.34 7.66 -40.82 -0.31 11.03 16 39 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -38.90 352.08 -6.47 -45.37 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.09 Total: 4.93 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.52 Total: 0.95 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: 0.76 Total: -65.17 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.90 -6.47 -45.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105137134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.859 kcal (2) G-P(sol) polarization free energy of solvation -38.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds