Wall clock time and date at job start Tue Mar 31 2020 03:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 C 1.50700 * 109.47208 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27843 * 4 3 2 7 7 C 1.47062 * 136.06053 * 359.34957 * 6 4 3 8 8 C 1.53749 * 87.88863 * 152.96825 * 7 6 4 9 9 N 1.46503 * 114.57496 * 272.66550 * 8 7 6 10 10 C 1.35308 * 125.86797 * 8.38571 * 9 8 7 11 11 C 1.35350 * 106.17900 * 179.90634 * 10 9 8 12 12 C 1.50693 * 126.75684 * 180.12700 * 11 10 9 13 13 N 1.46504 * 109.47283 * 95.29099 * 12 11 10 14 14 C 1.36941 * 120.00165 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99777 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99937 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00256 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99698 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47109 * 59.99773 * 18 16 14 20 20 H 1.48499 * 109.46791 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47173 * 299.99512 * 18 16 14 22 22 N 1.33773 * 106.49264 * 0.35015 * 11 10 9 23 23 N 1.28638 * 108.88551 * 359.77771 * 22 11 10 24 24 C 1.47070 * 136.05212 * 179.73146 * 6 4 3 25 25 H 1.09001 * 109.47109 * 60.00906 * 1 2 3 26 26 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 28 28 H 1.09000 * 109.47849 * 239.99917 * 2 1 3 29 29 H 1.08998 * 109.47443 * 119.99785 * 2 1 3 30 30 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 31 31 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 32 32 H 1.08998 * 113.46736 * 267.69995 * 7 6 4 33 33 H 1.08998 * 113.46422 * 38.13624 * 7 6 4 34 34 H 1.08999 * 114.08757 * 139.78257 * 8 7 6 35 35 H 1.08002 * 126.91258 * 0.02562 * 10 9 8 36 36 H 1.08997 * 109.47605 * 215.29741 * 12 11 10 37 37 H 1.08997 * 109.47097 * 335.29666 * 12 11 10 38 38 H 0.97003 * 119.99782 * 0.02562 * 13 12 11 39 39 H 0.97000 * 120.00348 * 180.02562 * 17 16 14 40 40 H 1.08996 * 113.46675 * 321.85429 * 24 6 4 41 41 H 1.08990 * 113.47047 * 92.24216 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2207 2.6099 0.0064 7 6 3.8664 4.0371 0.0014 8 6 5.2011 4.3126 0.7132 9 7 5.1438 4.2166 2.1739 10 6 4.0947 3.7630 2.8981 11 6 4.4690 3.8445 4.1962 12 6 3.6478 3.4539 5.3978 13 7 3.9868 2.0857 5.7971 14 6 3.3623 1.5115 6.8721 15 1 2.6197 2.0672 7.4253 16 6 3.6839 0.2153 7.2507 17 7 4.5886 -0.4621 6.5762 18 14 2.8326 -0.5676 8.7176 19 1 1.3690 -0.6183 8.4715 20 1 3.3495 -1.9461 8.9121 21 1 3.1022 0.2390 9.9349 22 7 5.7097 4.3448 4.2030 23 7 6.0807 4.5545 2.9892 24 6 5.6340 3.0166 0.0137 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.8110 4.4671 -0.9987 33 1 2.9923 4.2694 0.6097 34 1 5.7176 5.2051 0.3600 35 1 3.1494 3.4058 2.5168 36 1 3.8608 4.1359 6.2209 37 1 2.5885 3.5071 5.1468 38 1 4.6536 1.5865 5.2999 39 1 4.8131 -1.3679 6.8406 40 1 6.2659 2.3796 0.6326 41 1 6.0448 3.1766 -0.9830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105137134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:53 Heat of formation + Delta-G solvation = 88.110009 kcal Electronic energy + Delta-G solvation = -23581.594315 eV Core-core repulsion = 20113.700020 eV Total energy + Delta-G solvation = -3467.894295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.37336 -41.50743 -39.34811 -36.82585 -35.32869 -34.66167 -33.55369 -31.68124 -31.06043 -28.48337 -27.81123 -27.01700 -25.09574 -24.76387 -22.86161 -22.35718 -21.63338 -20.12762 -19.32919 -18.31834 -18.16676 -17.40702 -17.08400 -16.85102 -16.59612 -16.01234 -15.84298 -15.53514 -15.14091 -14.63374 -14.57331 -14.31510 -14.11579 -13.87397 -13.67329 -13.31690 -12.99840 -12.90834 -12.75011 -12.71996 -12.61466 -12.28507 -12.15402 -12.06563 -11.89851 -11.86364 -11.67690 -11.11821 -10.97073 -10.89948 -10.27653 -9.94370 -9.05366 -7.94887 -5.26527 0.52587 1.28200 1.42075 1.48693 1.52157 1.54072 1.58357 1.65717 2.57943 2.78161 3.13034 3.36480 3.45593 3.68257 3.82914 3.92855 3.99076 4.06680 4.13418 4.18926 4.24763 4.38999 4.43138 4.51166 4.56853 4.61124 4.68135 4.70049 4.71556 4.82662 4.92177 5.08639 5.14724 5.20558 5.26179 5.43247 5.48121 5.66410 6.23204 6.52175 7.03491 7.29574 7.47085 8.00952 8.26804 9.28961 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.005037 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.657337 B = 5557.135366 C = 7306.298905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.123 4.123 4 C 0.532 3.468 5 O -0.594 6.594 6 N -0.662 5.662 7 C 0.115 3.885 8 C 0.091 3.909 9 N -0.267 5.267 10 C -0.015 4.015 11 C -0.038 4.038 12 C 0.235 3.765 13 N -0.741 5.741 14 C -0.244 4.244 15 H 0.088 0.912 16 C -0.080 4.080 17 N -0.976 5.976 18 Si 0.981 3.019 19 H -0.270 1.270 20 H -0.300 1.300 21 H -0.275 1.275 22 N -0.298 5.298 23 N -0.103 5.103 24 C 0.091 3.909 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.172 0.828 33 H 0.109 0.891 34 H 0.188 0.812 35 H 0.211 0.789 36 H 0.032 0.968 37 H 0.063 0.937 38 H 0.367 0.633 39 H 0.249 0.751 40 H 0.042 0.958 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 13.903 -22.980 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.163 4.163 4 C 0.325 3.675 5 O -0.475 6.475 6 N -0.398 5.398 7 C -0.007 4.007 8 C -0.011 4.011 9 N -0.061 5.061 10 C -0.167 4.167 11 C -0.176 4.176 12 C 0.107 3.893 13 N -0.383 5.383 14 C -0.375 4.375 15 H 0.106 0.894 16 C -0.272 4.272 17 N -0.627 5.627 18 Si 0.809 3.191 19 H -0.195 1.195 20 H -0.226 1.226 21 H -0.201 1.201 22 N -0.165 5.165 23 N -0.081 5.081 24 C -0.033 4.033 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.127 0.873 31 H 0.152 0.848 32 H 0.190 0.810 33 H 0.127 0.873 34 H 0.205 0.795 35 H 0.228 0.772 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.197 0.803 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.026 13.741 -22.718 27.464 hybrid contribution -0.398 -1.764 0.805 1.979 sum -7.424 11.977 -21.913 26.053 Atomic orbital electron populations 1.21736 0.93119 1.02372 1.03011 1.21284 0.97268 0.95341 1.01384 1.21723 0.87887 0.99849 1.06811 1.21167 0.91470 0.80969 0.73939 1.90737 1.71876 1.32714 1.52126 1.49908 1.09419 1.06644 1.73835 1.23863 0.95719 0.77070 1.04026 1.23451 1.03225 1.02236 0.72147 1.47166 1.09670 1.40237 1.08993 1.23443 0.97161 1.05319 0.90751 1.22285 0.93709 1.05174 0.96423 1.18990 0.94899 0.85677 0.89715 1.42538 1.48561 1.11826 1.35375 1.19687 1.16268 0.96383 1.05195 0.89429 1.25712 1.00637 0.97989 1.02852 1.69880 1.37276 1.11548 1.43992 0.85097 0.78245 0.76729 0.78994 1.19512 1.22618 1.20136 1.75034 1.12579 1.16518 1.12338 1.78142 1.14931 1.20626 0.94399 1.23626 0.84966 0.91876 1.02784 0.90341 0.92773 0.92149 0.92394 0.94873 0.87295 0.84801 0.81042 0.87262 0.79542 0.77192 0.95037 0.91889 0.80263 0.94194 0.93887 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.11 -2.49 5.22 30.59 0.16 -2.33 16 3 C -0.12 -2.01 5.53 29.85 0.17 -1.85 16 4 C 0.53 13.19 8.08 87.66 0.71 13.90 16 5 O -0.59 -22.47 16.76 -3.04 -0.05 -22.52 16 6 N -0.66 -11.02 3.43 -857.85 -2.94 -13.96 16 7 C 0.11 0.53 7.60 83.27 0.63 1.16 16 8 C 0.09 1.04 5.36 45.55 0.24 1.28 16 9 N -0.27 -6.71 3.56 -326.16 -1.16 -7.87 16 10 C -0.02 -0.43 10.40 83.49 0.87 0.44 16 11 C -0.04 -1.45 6.61 41.59 0.28 -1.18 16 12 C 0.23 10.07 6.82 85.63 0.58 10.66 16 13 N -0.74 -40.70 5.59 -347.18 -1.94 -42.64 16 14 C -0.24 -14.15 9.99 84.03 0.84 -13.31 16 15 H 0.09 4.70 7.83 -2.91 -0.02 4.67 16 16 C -0.08 -4.83 5.50 84.86 0.47 -4.37 16 17 N -0.98 -64.17 13.06 21.65 0.28 -63.89 16 18 Si 0.98 47.75 29.55 68.60 2.03 49.78 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 20 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 N -0.30 -12.46 12.41 -48.60 -0.60 -13.06 16 23 N -0.10 -3.53 13.17 37.02 0.49 -3.04 16 24 C 0.09 1.40 8.42 83.18 0.70 2.10 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 29 H 0.03 0.98 8.10 -2.39 -0.02 0.96 16 30 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.17 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H 0.11 0.30 7.00 -2.39 -0.02 0.29 16 34 H 0.19 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.21 4.53 7.22 -2.91 -0.02 4.51 16 36 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.37 22.52 7.66 -92.71 -0.71 21.81 16 39 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 40 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -93.59 352.08 2.79 -90.81 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.33 Total: 21.44 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.36 Total: 4.96 kcal Atomic # 7 Polarization: -138.59 SS G_CDS: -5.88 Total: -144.47 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -93.59 2.79 -90.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105137134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.918 kcal (2) G-P(sol) polarization free energy of solvation -93.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds