Wall clock time and date at job start Tue Mar 31 2020 03:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47353 * 2 1 4 4 C 1.50703 * 109.47398 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99488 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 3 8 8 C 1.50700 * 109.46769 * 179.72341 * 7 6 4 9 9 C 1.35352 * 126.75361 * 94.71485 * 8 7 6 10 10 N 1.35317 * 106.17693 * 179.84844 * 9 8 7 11 11 C 1.46491 * 125.87029 * 180.18381 * 10 9 8 12 12 C 1.53947 * 113.74330 * 14.03356 * 11 10 9 13 13 N 1.47807 * 86.03671 * 222.08595 * 12 11 10 14 14 C 1.36935 * 134.45249 * 204.64331 * 13 12 11 15 15 H 1.08003 * 120.00142 * 179.86840 * 14 13 12 16 16 C 1.38809 * 120.00476 * 359.86834 * 14 13 12 17 17 N 1.31625 * 119.99820 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00334 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46880 * 60.00010 * 18 16 14 20 20 H 1.48496 * 109.47045 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47040 * 299.99997 * 18 16 14 22 22 C 1.47576 * 91.05211 * 24.54811 * 13 12 11 23 23 N 1.28721 * 108.25949 * 0.41126 * 10 9 8 24 24 N 1.28636 * 110.17920 * 359.73997 * 23 10 9 25 25 H 1.08999 * 109.47616 * 300.00389 * 1 2 3 26 26 H 1.09003 * 109.47280 * 60.00024 * 1 2 3 27 27 H 1.09001 * 109.47549 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47142 * 239.99373 * 2 1 3 29 29 H 1.09011 * 109.46657 * 119.99931 * 2 1 3 30 30 H 1.08998 * 109.47508 * 59.99597 * 3 2 1 31 31 H 1.09002 * 109.47337 * 299.99883 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 33 33 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 34 34 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 35 35 H 1.08002 * 126.90994 * 359.97438 * 9 8 7 36 36 H 1.09000 * 112.94374 * 145.62885 * 11 10 9 37 37 H 1.09002 * 113.76976 * 336.35198 * 12 11 10 38 38 H 1.08999 * 113.76656 * 107.74318 * 12 11 10 39 39 H 0.96996 * 120.00067 * 180.02562 * 17 16 14 40 40 H 1.09000 * 113.76645 * 221.14620 * 22 13 12 41 41 H 1.09000 * 113.87057 * 89.76846 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1533 0.3920 0.0015 6 7 4.2209 2.6096 0.0013 7 6 5.6859 2.6095 -0.0043 8 6 6.1882 4.0303 -0.0091 9 6 6.5463 4.7664 1.0688 10 7 6.9332 5.9717 0.5905 11 6 7.4107 7.1005 1.3928 12 6 7.7732 6.7226 2.8405 13 7 7.0980 7.9787 3.2289 14 6 7.1944 8.8282 4.2985 15 1 6.5707 9.7087 4.3469 16 6 8.0936 8.5578 5.3209 17 7 8.8540 7.4851 5.2618 18 14 8.2245 9.7163 6.7804 19 1 6.9113 9.7950 7.4692 20 1 9.2494 9.2067 7.7265 21 1 8.6165 11.0678 6.3061 22 6 6.2806 7.9510 2.0005 23 7 6.8049 5.9575 -0.6902 24 7 6.3626 4.8139 -1.0792 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.7359 3.4496 0.0009 33 1 6.0525 2.0975 0.8855 34 1 6.0459 2.0938 -0.8944 35 1 6.5289 4.4539 2.1024 36 1 8.1778 7.6869 0.8871 37 1 7.2704 5.8244 3.1991 38 1 8.8451 6.7192 3.0383 39 1 9.4821 7.2959 5.9763 40 1 6.1628 8.9267 1.5291 41 1 5.3377 7.4151 2.1101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107114807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:03 Heat of formation + Delta-G solvation = 106.163083 kcal Electronic energy + Delta-G solvation = -22605.457277 eV Core-core repulsion = 19138.345822 eV Total energy + Delta-G solvation = -3467.111455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.09862 -39.78157 -38.39677 -35.40924 -34.50387 -33.43349 -32.02160 -31.32889 -28.64347 -27.96860 -26.26625 -25.27484 -24.40888 -22.20111 -21.93961 -21.08525 -20.40013 -19.65036 -17.67722 -17.17081 -16.64577 -16.37202 -16.10613 -15.60966 -15.14511 -14.86921 -14.51592 -14.15901 -14.10056 -13.55811 -13.23786 -13.16895 -12.94098 -12.34729 -12.16459 -12.08814 -11.99381 -11.86404 -11.44099 -11.39726 -11.20545 -10.99455 -10.98357 -10.96319 -10.56561 -10.28830 -10.07219 -9.91050 -9.58609 -9.18087 -9.12737 -9.06767 -7.29209 -6.07394 -3.43066 1.78850 2.41518 2.55107 2.61344 3.24900 3.29491 3.30706 3.35187 4.19608 4.33374 4.57316 4.66940 4.68598 4.71004 4.75803 4.91075 5.11989 5.17167 5.18652 5.24175 5.37037 5.37787 5.46068 5.51784 5.60471 5.73321 5.78728 5.90561 6.01952 6.06549 6.07633 6.13267 6.26445 6.28492 6.50578 6.76503 6.99825 7.13102 7.38361 7.64675 8.11036 8.70699 8.72655 9.38936 10.16164 11.09765 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.002822 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.305596 B = 9917.933327 C =10688.514711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.512 3.488 5 O -0.544 6.544 6 N -0.725 5.725 7 C 0.214 3.786 8 C -0.063 4.063 9 C -0.015 4.015 10 N -0.265 5.265 11 C 0.077 3.923 12 C 0.164 3.836 13 N -0.598 5.598 14 C -0.234 4.234 15 H 0.087 0.913 16 C -0.001 4.001 17 N -0.920 5.920 18 Si 0.920 3.080 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.281 1.281 22 C 0.120 3.880 23 N -0.089 5.089 24 N -0.268 5.268 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.403 0.597 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.191 0.809 36 H 0.132 0.868 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.260 0.740 40 H 0.062 0.938 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 -9.296 -8.470 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.299 3.701 5 O -0.421 6.421 6 N -0.377 5.377 7 C 0.089 3.911 8 C -0.202 4.202 9 C -0.169 4.169 10 N -0.057 5.057 11 C -0.025 4.025 12 C 0.037 3.963 13 N -0.325 5.325 14 C -0.360 4.360 15 H 0.105 0.895 16 C -0.198 4.198 17 N -0.565 5.565 18 Si 0.749 3.251 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.207 1.207 22 C -0.007 4.007 23 N -0.068 5.068 24 N -0.134 5.134 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.237 0.763 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.208 0.792 36 H 0.150 0.850 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.471 -9.075 -9.440 16.766 hybrid contribution -0.166 0.616 1.958 2.060 sum -10.637 -8.459 -7.482 15.514 Atomic orbital electron populations 1.21800 0.95555 1.01917 1.01809 1.21275 0.95179 0.94693 1.03580 1.21726 0.91669 1.00229 1.04510 1.20753 0.90350 0.83354 0.75627 1.90705 1.70569 1.31264 1.49580 1.46113 1.07099 1.08978 1.75548 1.19272 0.79388 0.88899 1.03509 1.21740 1.10069 0.98538 0.89830 1.23509 1.04823 0.86538 1.02002 1.47916 1.39700 1.12065 1.06050 1.25291 1.00036 0.85499 0.91670 1.22746 1.00881 0.89999 0.82674 1.45661 1.41863 1.24003 1.20986 1.18951 1.19035 1.02170 0.95884 0.89537 1.24858 0.98325 0.97918 0.98729 1.69751 1.25977 1.26529 1.34246 0.86083 0.77575 0.79843 0.81578 1.20865 1.21298 1.20723 1.22927 0.93051 0.97429 0.87316 1.78274 1.18277 1.16436 0.93804 1.75019 1.14738 0.97642 1.26038 0.92649 0.92706 0.92450 0.91250 0.91197 0.88833 0.88885 0.76308 0.89683 0.89839 0.79227 0.85023 0.94101 0.89015 0.93013 0.91966 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.11 -0.89 5.22 -26.74 -0.14 -1.03 16 3 C -0.14 -1.09 5.70 -27.89 -0.16 -1.25 16 4 C 0.51 5.74 7.83 -10.98 -0.09 5.66 16 5 O -0.54 -8.11 15.98 5.55 0.09 -8.02 16 6 N -0.73 -7.67 5.55 -61.47 -0.34 -8.01 16 7 C 0.21 2.56 6.23 -5.19 -0.03 2.53 16 8 C -0.06 -0.88 6.61 -82.78 -0.55 -1.42 16 9 C -0.01 -0.21 10.72 -17.04 -0.18 -0.40 16 10 N -0.26 -4.26 3.54 -56.31 -0.20 -4.46 16 11 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 12 C 0.16 3.32 6.90 -2.84 -0.02 3.30 16 13 N -0.60 -13.67 3.70 -177.90 -0.66 -14.33 16 14 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 15 H 0.09 2.12 7.83 -52.48 -0.41 1.71 16 16 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 17 N -0.92 -24.95 11.39 55.49 0.63 -24.32 16 18 Si 0.92 20.54 29.55 -169.99 -5.02 15.51 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 C 0.12 2.19 8.74 -2.97 -0.03 2.16 16 23 N -0.09 -1.53 13.17 60.35 0.79 -0.74 16 24 N -0.27 -4.41 12.41 33.29 0.41 -4.00 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.07 0.64 8.10 -51.92 -0.42 0.22 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.40 3.68 8.46 -40.82 -0.35 3.34 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.19 2.40 6.74 -52.49 -0.35 2.05 16 36 H 0.13 2.18 8.14 -51.93 -0.42 1.75 16 37 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 38 H 0.09 2.08 7.16 -51.93 -0.37 1.70 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -30.49 348.25 -6.50 -36.99 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.01 Total: 2.46 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.44 Total: 3.66 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.64 Total: -55.85 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.49 -6.50 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107114807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.152 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds