Wall clock time and date at job start Tue Mar 31 2020 03:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47353 * 2 1 4 4 C 1.50703 * 109.47398 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99488 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 3 8 8 C 1.50700 * 109.46769 * 179.72341 * 7 6 4 9 9 C 1.35352 * 126.75361 * 94.71485 * 8 7 6 10 10 N 1.35317 * 106.17693 * 179.84844 * 9 8 7 11 11 C 1.46491 * 125.87029 * 180.18381 * 10 9 8 12 12 C 1.53947 * 113.74330 * 14.03356 * 11 10 9 13 13 N 1.47807 * 86.03671 * 222.08595 * 12 11 10 14 14 C 1.36935 * 134.45249 * 204.64331 * 13 12 11 15 15 H 1.08003 * 120.00142 * 179.86840 * 14 13 12 16 16 C 1.38809 * 120.00476 * 359.86834 * 14 13 12 17 17 N 1.31625 * 119.99820 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00334 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46880 * 60.00010 * 18 16 14 20 20 H 1.48496 * 109.47045 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47040 * 299.99997 * 18 16 14 22 22 C 1.47576 * 91.05211 * 24.54811 * 13 12 11 23 23 N 1.28721 * 108.25949 * 0.41126 * 10 9 8 24 24 N 1.28636 * 110.17920 * 359.73997 * 23 10 9 25 25 H 1.08999 * 109.47616 * 300.00389 * 1 2 3 26 26 H 1.09003 * 109.47280 * 60.00024 * 1 2 3 27 27 H 1.09001 * 109.47549 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47142 * 239.99373 * 2 1 3 29 29 H 1.09011 * 109.46657 * 119.99931 * 2 1 3 30 30 H 1.08998 * 109.47508 * 59.99597 * 3 2 1 31 31 H 1.09002 * 109.47337 * 299.99883 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 33 33 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 34 34 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 35 35 H 1.08002 * 126.90994 * 359.97438 * 9 8 7 36 36 H 1.09000 * 112.94374 * 145.62885 * 11 10 9 37 37 H 1.09002 * 113.76976 * 336.35198 * 12 11 10 38 38 H 1.08999 * 113.76656 * 107.74318 * 12 11 10 39 39 H 0.96996 * 120.00067 * 180.02562 * 17 16 14 40 40 H 1.09000 * 113.76645 * 221.14620 * 22 13 12 41 41 H 1.09000 * 113.87057 * 89.76846 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1533 0.3920 0.0015 6 7 4.2209 2.6096 0.0013 7 6 5.6859 2.6095 -0.0043 8 6 6.1882 4.0303 -0.0091 9 6 6.5463 4.7664 1.0688 10 7 6.9332 5.9717 0.5905 11 6 7.4107 7.1005 1.3928 12 6 7.7732 6.7226 2.8405 13 7 7.0980 7.9787 3.2289 14 6 7.1944 8.8282 4.2985 15 1 6.5707 9.7087 4.3469 16 6 8.0936 8.5578 5.3209 17 7 8.8540 7.4851 5.2618 18 14 8.2245 9.7163 6.7804 19 1 6.9113 9.7950 7.4692 20 1 9.2494 9.2067 7.7265 21 1 8.6165 11.0678 6.3061 22 6 6.2806 7.9510 2.0005 23 7 6.8049 5.9575 -0.6902 24 7 6.3626 4.8139 -1.0792 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.7359 3.4496 0.0009 33 1 6.0525 2.0975 0.8855 34 1 6.0459 2.0938 -0.8944 35 1 6.5289 4.4539 2.1024 36 1 8.1778 7.6869 0.8871 37 1 7.2704 5.8244 3.1991 38 1 8.8451 6.7192 3.0383 39 1 9.4821 7.2959 5.9763 40 1 6.1628 8.9267 1.5291 41 1 5.3377 7.4151 2.1101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107114807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:02 Heat of formation + Delta-G solvation = 85.564357 kcal Electronic energy + Delta-G solvation = -22606.350505 eV Core-core repulsion = 19138.345822 eV Total energy + Delta-G solvation = -3468.004683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.35866 -40.70207 -39.93874 -36.39147 -35.21228 -34.95611 -33.65856 -32.48333 -29.73939 -29.36820 -27.28140 -26.74046 -25.99162 -23.43332 -22.92153 -22.23791 -21.24083 -21.12538 -19.05678 -18.54673 -17.84013 -17.52099 -16.97058 -16.86980 -16.72625 -16.02492 -15.78458 -15.33893 -15.09613 -14.81689 -14.44242 -14.21866 -13.92772 -13.70200 -13.57253 -13.39557 -12.98756 -12.81831 -12.74514 -12.63991 -12.60420 -12.43814 -12.14804 -11.99264 -11.80674 -11.72035 -11.58649 -11.11024 -10.97285 -10.86643 -10.27525 -10.11499 -9.11127 -8.00915 -5.36352 0.56170 1.24211 1.28950 1.49064 1.50794 1.56573 1.68173 2.42156 2.44812 3.07351 3.11954 3.31175 3.33526 3.72958 3.84426 3.91369 3.99794 4.07051 4.15394 4.16780 4.47202 4.54341 4.58018 4.65460 4.70226 4.74544 4.81117 4.91807 4.95734 5.00443 5.04940 5.09900 5.25729 5.31807 5.36394 5.37035 5.50835 5.65724 5.77225 6.54422 6.80171 7.25249 7.45166 7.48878 8.33633 9.15664 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.002822 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.305596 B = 9917.933327 C =10688.514711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.134 4.134 4 C 0.510 3.490 5 O -0.586 6.586 6 N -0.718 5.718 7 C 0.218 3.782 8 C -0.049 4.049 9 C -0.013 4.013 10 N -0.268 5.268 11 C 0.104 3.896 12 C 0.165 3.835 13 N -0.628 5.628 14 C -0.239 4.239 15 H 0.091 0.909 16 C -0.056 4.056 17 N -0.949 5.949 18 Si 0.980 3.020 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.275 1.275 22 C 0.126 3.874 23 N -0.108 5.108 24 N -0.282 5.282 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.412 0.588 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.207 0.793 36 H 0.138 0.862 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.253 0.747 40 H 0.076 0.924 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.958 -8.869 -8.731 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.174 4.174 4 C 0.299 3.701 5 O -0.466 6.466 6 N -0.370 5.370 7 C 0.092 3.908 8 C -0.188 4.188 9 C -0.167 4.167 10 N -0.061 5.061 11 C 0.002 3.998 12 C 0.039 3.961 13 N -0.355 5.355 14 C -0.367 4.367 15 H 0.109 0.891 16 C -0.250 4.250 17 N -0.596 5.596 18 Si 0.808 3.192 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.201 1.201 22 C 0.000 4.000 23 N -0.087 5.087 24 N -0.148 5.148 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.248 0.752 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.224 0.776 36 H 0.156 0.844 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.209 -8.621 -9.743 17.842 hybrid contribution 0.317 0.416 1.955 2.024 sum -11.892 -8.206 -7.788 16.414 Atomic orbital electron populations 1.21764 0.93830 1.02354 1.02656 1.21258 0.96607 0.94782 1.02140 1.21774 0.88786 1.00333 1.06504 1.21389 0.91734 0.82611 0.74409 1.90691 1.71650 1.32702 1.51563 1.46045 1.06480 1.09450 1.75062 1.19230 0.80378 0.87524 1.03638 1.21930 1.09024 0.98858 0.88992 1.23831 1.04067 0.85890 1.02884 1.47720 1.40162 1.12289 1.05920 1.24698 0.99531 0.85264 0.90292 1.22616 0.99134 0.89616 0.84746 1.45903 1.43412 1.24556 1.21653 1.19301 1.18320 1.02581 0.96475 0.89103 1.25608 0.98645 0.99488 1.01275 1.69909 1.26863 1.28175 1.34692 0.85138 0.77283 0.78213 0.78608 1.20266 1.22138 1.20105 1.23018 0.93207 0.98497 0.85315 1.78282 1.19358 1.17000 0.94019 1.75008 1.15057 0.97854 1.26893 0.91828 0.91760 0.92323 0.92729 0.92747 0.86702 0.86747 0.75214 0.88879 0.90513 0.77603 0.84446 0.93500 0.91841 0.93781 0.90572 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.11 -1.67 5.22 30.59 0.16 -1.51 16 3 C -0.13 -1.78 5.70 29.85 0.17 -1.61 16 4 C 0.51 10.73 7.83 87.66 0.69 11.42 16 5 O -0.59 -17.29 15.98 -3.04 -0.05 -17.34 16 6 N -0.72 -13.86 5.55 -466.79 -2.59 -16.45 16 7 C 0.22 4.89 6.23 85.63 0.53 5.43 16 8 C -0.05 -1.28 6.61 41.60 0.28 -1.00 16 9 C -0.01 -0.36 10.72 83.49 0.89 0.53 16 10 N -0.27 -8.20 3.54 -332.06 -1.18 -9.38 16 11 C 0.10 3.42 5.14 46.75 0.24 3.66 16 12 C 0.17 6.64 6.90 86.44 0.60 7.23 16 13 N -0.63 -28.18 3.70 -716.75 -2.65 -30.84 16 14 C -0.24 -12.06 10.70 84.03 0.90 -11.16 16 15 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 16 C -0.06 -2.91 5.50 84.86 0.47 -2.45 16 17 N -0.95 -52.11 11.39 21.65 0.25 -51.87 16 18 Si 0.98 42.12 29.55 68.60 2.03 44.15 16 19 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.30 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 22 C 0.13 4.34 8.74 86.49 0.76 5.10 16 23 N -0.11 -3.56 13.17 37.02 0.49 -3.07 16 24 N -0.28 -8.86 12.41 -48.60 -0.60 -9.46 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 29 H 0.05 0.98 8.10 -2.38 -0.02 0.96 16 30 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.41 6.52 8.46 -92.71 -0.78 5.73 16 33 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.21 4.78 6.74 -2.91 -0.02 4.76 16 36 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 37 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 38 H 0.06 2.92 7.16 -2.39 -0.02 2.90 16 39 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -65.09 348.25 2.34 -62.75 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.26 Total: 16.72 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.39 Total: 14.78 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -6.29 Total: -121.06 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.05 Total: -17.34 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -65.09 2.34 -62.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107114807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.316 kcal (2) G-P(sol) polarization free energy of solvation -65.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds