Wall clock time and date at job start Tue Mar 31 2020 03:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 C 1.50697 * 109.47737 * 119.99813 * 2 1 3 5 5 O 1.21283 * 120.00521 * 239.72883 * 4 2 1 6 6 N 1.34784 * 119.99774 * 59.99989 * 4 2 1 7 7 C 1.46499 * 119.99893 * 179.72962 * 6 4 2 8 8 C 1.50699 * 109.46700 * 180.02562 * 7 6 4 9 9 C 1.35351 * 126.75692 * 94.71126 * 8 7 6 10 10 N 1.35313 * 106.17914 * 179.84733 * 9 8 7 11 11 C 1.46501 * 125.86874 * 180.18435 * 10 9 8 12 12 C 1.53939 * 113.74196 * 14.04027 * 11 10 9 13 13 N 1.47811 * 86.03893 * 222.08403 * 12 11 10 14 14 C 1.36935 * 134.46055 * 204.64589 * 13 12 11 15 15 H 1.07998 * 120.00245 * 179.86140 * 14 13 12 16 16 C 1.38810 * 119.99953 * 359.86489 * 14 13 12 17 17 N 1.31619 * 119.99849 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00295 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46671 * 89.99968 * 18 16 14 20 20 H 1.48495 * 109.47258 * 209.99890 * 18 16 14 21 21 H 1.48501 * 109.46781 * 330.00211 * 18 16 14 22 22 C 1.47587 * 91.04823 * 24.54715 * 13 12 11 23 23 N 1.28722 * 108.26119 * 0.41861 * 10 9 8 24 24 N 1.28636 * 110.17653 * 359.73556 * 23 10 9 25 25 H 1.08998 * 109.46893 * 299.99667 * 1 2 3 26 26 H 1.08994 * 109.47310 * 59.99958 * 1 2 3 27 27 H 1.09006 * 109.46641 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47584 * 240.00089 * 2 1 3 29 29 H 1.08993 * 109.47555 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46769 * 300.00214 * 3 2 1 31 31 H 1.09001 * 109.46782 * 59.99598 * 3 2 1 32 32 H 0.97005 * 119.99846 * 359.72750 * 6 4 2 33 33 H 1.08998 * 109.47134 * 299.99552 * 7 6 4 34 34 H 1.08994 * 109.47397 * 59.99843 * 7 6 4 35 35 H 1.08000 * 126.90979 * 359.97438 * 9 8 7 36 36 H 1.09003 * 112.93870 * 145.63155 * 11 10 9 37 37 H 1.08999 * 113.77186 * 336.34625 * 12 11 10 38 38 H 1.08993 * 113.77120 * 107.74492 * 12 11 10 39 39 H 0.96998 * 120.00078 * 180.02562 * 17 16 14 40 40 H 1.09002 * 113.76889 * 221.14980 * 22 13 12 41 41 H 1.09000 * 113.86794 * 89.77341 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7103 1.2304 5 8 2.7338 -0.1224 2.0262 6 7 1.7069 -2.0007 1.4437 7 6 2.2002 -2.6930 2.6369 8 6 1.6974 -4.1137 2.6372 9 6 2.3493 -5.2038 2.1696 10 7 1.5236 -6.2552 2.3781 11 6 1.8069 -7.6507 2.0338 12 6 3.2864 -7.9197 1.7044 13 7 2.7812 -8.7573 0.5963 14 6 3.2842 -9.8155 -0.1125 15 1 2.6966 -10.2676 -0.8978 16 6 4.5492 -10.3073 0.1786 17 7 5.2650 -9.7567 1.1361 18 14 5.2352 -11.7513 -0.7878 19 1 5.9752 -11.2472 -1.9725 20 1 6.1567 -12.5320 0.0761 21 1 4.1188 -12.6224 -1.2352 22 6 1.5166 -7.9971 0.5622 23 7 0.4443 -5.8179 2.9265 24 7 0.5164 -4.5446 3.0944 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.1459 -2.4710 0.8072 33 1 3.2902 -2.6939 2.6318 34 1 1.8414 -2.1800 3.5291 35 1 3.3320 -5.2295 1.7222 36 1 1.3796 -8.3587 2.7439 37 1 3.8307 -7.0352 1.3736 38 1 3.8132 -8.4810 2.4760 39 1 6.1492 -10.1001 1.3392 40 1 0.6331 -8.6202 0.4235 41 1 1.5380 -7.1352 -0.1046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107126219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:05 Heat of formation + Delta-G solvation = 108.806870 kcal Electronic energy + Delta-G solvation = -22905.645623 eV Core-core repulsion = 19438.648811 eV Total energy + Delta-G solvation = -3466.996812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.09823 -39.94356 -38.39721 -35.33168 -34.66629 -33.41743 -31.99913 -31.21132 -28.01413 -27.50359 -26.83712 -25.31265 -24.42799 -23.28626 -21.95761 -21.09699 -20.05555 -19.64231 -17.67351 -17.23081 -16.71731 -16.39755 -15.64329 -15.63049 -15.15058 -14.76491 -14.47696 -14.14232 -14.00842 -13.41223 -13.29124 -12.96884 -12.74773 -12.55025 -12.23263 -12.17671 -12.11755 -11.87009 -11.43196 -11.40014 -11.30372 -11.20880 -10.99042 -10.97448 -10.55725 -10.26335 -9.98971 -9.90670 -9.58469 -9.17619 -9.12680 -9.06575 -7.29116 -6.07546 -3.43121 1.78891 2.41487 2.54791 2.61325 3.24322 3.29656 3.31607 3.34705 4.19422 4.33304 4.48111 4.64614 4.68542 4.70869 4.71785 4.90458 5.12296 5.13951 5.17795 5.34436 5.37683 5.46314 5.49618 5.56678 5.59979 5.69391 5.74781 5.88665 6.01491 6.01965 6.07640 6.13273 6.26532 6.28748 6.50611 6.76572 6.99848 7.13298 7.38509 7.64704 8.11009 8.70764 8.72641 9.38894 10.16108 11.09646 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002964 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.930280 B = 9443.110743 C = 9977.604401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.132 4.132 4 C 0.517 3.483 5 O -0.542 6.542 6 N -0.723 5.723 7 C 0.214 3.786 8 C -0.063 4.063 9 C -0.015 4.015 10 N -0.265 5.265 11 C 0.077 3.923 12 C 0.164 3.836 13 N -0.598 5.598 14 C -0.233 4.233 15 H 0.087 0.913 16 C -0.001 4.001 17 N -0.919 5.919 18 Si 0.920 3.080 19 H -0.286 1.286 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.120 3.880 23 N -0.089 5.089 24 N -0.267 5.267 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.402 0.598 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.191 0.809 36 H 0.132 0.868 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.259 0.741 40 H 0.062 0.938 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 14.966 -1.853 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.190 4.190 4 C 0.303 3.697 5 O -0.419 6.419 6 N -0.375 5.375 7 C 0.089 3.911 8 C -0.202 4.202 9 C -0.169 4.169 10 N -0.057 5.057 11 C -0.025 4.025 12 C 0.037 3.963 13 N -0.325 5.325 14 C -0.360 4.360 15 H 0.105 0.895 16 C -0.198 4.198 17 N -0.565 5.565 18 Si 0.749 3.251 19 H -0.213 1.213 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.007 4.007 23 N -0.068 5.068 24 N -0.134 5.134 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.237 0.763 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.208 0.792 36 H 0.150 0.850 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.475 14.678 -0.777 16.490 hybrid contribution 1.299 -0.976 -1.304 2.084 sum -6.175 13.702 -2.081 15.173 Atomic orbital electron populations 1.21796 0.92863 1.02668 1.02925 1.21313 0.97644 0.98078 0.96650 1.21608 1.01821 0.93510 1.02028 1.20689 0.79965 0.81364 0.87641 1.90699 1.37838 1.66110 1.47298 1.46096 1.53605 1.12107 1.25723 1.19277 0.98553 0.84606 0.88642 1.21736 0.94321 0.96428 1.07686 1.23506 1.00597 0.86597 1.06178 1.47915 1.10800 1.10183 1.36827 1.25289 1.03036 0.75015 0.99146 1.22744 0.87919 0.93816 0.91834 1.45672 1.14139 1.33006 1.39686 1.19000 0.99085 1.04631 1.13277 0.89487 1.24856 0.96448 0.99746 0.98788 1.69759 1.11990 1.42785 1.31917 0.86011 0.78812 0.81334 0.78947 1.21266 1.21340 1.20331 1.22929 0.92266 0.95073 0.90460 1.78275 1.07976 1.05592 1.14943 1.75020 1.17979 1.02225 1.18185 0.91967 0.91412 0.92042 0.88441 0.91918 0.92124 0.91936 0.76319 0.89682 0.89823 0.79234 0.85025 0.94102 0.89016 0.93075 0.91966 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.09 37.16 0.34 -0.67 16 2 C -0.12 -0.95 3.26 -91.77 -0.30 -1.25 16 3 C -0.13 -1.09 8.48 37.16 0.32 -0.77 16 4 C 0.52 5.95 7.15 -10.98 -0.08 5.87 16 5 O -0.54 -8.21 15.98 5.56 0.09 -8.12 16 6 N -0.72 -7.79 5.44 -61.48 -0.33 -8.12 16 7 C 0.21 2.57 6.23 -5.19 -0.03 2.54 16 8 C -0.06 -0.88 6.61 -82.78 -0.55 -1.42 16 9 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 10 N -0.26 -4.26 3.54 -56.30 -0.20 -4.46 16 11 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 12 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 13 N -0.60 -13.64 3.70 -177.89 -0.66 -14.30 16 14 C -0.23 -5.95 10.70 -15.06 -0.16 -6.11 16 15 H 0.09 2.14 7.83 -52.49 -0.41 1.73 16 16 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 17 N -0.92 -24.90 11.39 55.49 0.63 -24.27 16 18 Si 0.92 20.53 29.55 -169.99 -5.02 15.51 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 22 C 0.12 2.18 8.74 -2.97 -0.03 2.16 16 23 N -0.09 -1.53 13.17 60.35 0.79 -0.73 16 24 N -0.27 -4.40 12.41 33.29 0.41 -3.99 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.40 3.81 7.87 -40.82 -0.32 3.49 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.19 2.40 6.74 -52.49 -0.35 2.05 16 36 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 37 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 38 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -30.37 346.29 -6.18 -36.55 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.96 Total: 2.63 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.15 Total: 4.08 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.65 Total: -55.87 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.37 -6.18 -36.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107126219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.357 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds