Wall clock time and date at job start Tue Mar 31 2020 03:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 C 1.50697 * 109.47737 * 119.99813 * 2 1 3 5 5 O 1.21283 * 120.00521 * 239.72883 * 4 2 1 6 6 N 1.34784 * 119.99774 * 59.99989 * 4 2 1 7 7 C 1.46499 * 119.99893 * 179.72962 * 6 4 2 8 8 C 1.50699 * 109.46700 * 180.02562 * 7 6 4 9 9 C 1.35351 * 126.75692 * 94.71126 * 8 7 6 10 10 N 1.35313 * 106.17914 * 179.84733 * 9 8 7 11 11 C 1.46501 * 125.86874 * 180.18435 * 10 9 8 12 12 C 1.53939 * 113.74196 * 14.04027 * 11 10 9 13 13 N 1.47811 * 86.03893 * 222.08403 * 12 11 10 14 14 C 1.36935 * 134.46055 * 204.64589 * 13 12 11 15 15 H 1.07998 * 120.00245 * 179.86140 * 14 13 12 16 16 C 1.38810 * 119.99953 * 359.86489 * 14 13 12 17 17 N 1.31619 * 119.99849 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00295 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46671 * 89.99968 * 18 16 14 20 20 H 1.48495 * 109.47258 * 209.99890 * 18 16 14 21 21 H 1.48501 * 109.46781 * 330.00211 * 18 16 14 22 22 C 1.47587 * 91.04823 * 24.54715 * 13 12 11 23 23 N 1.28722 * 108.26119 * 0.41861 * 10 9 8 24 24 N 1.28636 * 110.17653 * 359.73556 * 23 10 9 25 25 H 1.08998 * 109.46893 * 299.99667 * 1 2 3 26 26 H 1.08994 * 109.47310 * 59.99958 * 1 2 3 27 27 H 1.09006 * 109.46641 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47584 * 240.00089 * 2 1 3 29 29 H 1.08993 * 109.47555 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46769 * 300.00214 * 3 2 1 31 31 H 1.09001 * 109.46782 * 59.99598 * 3 2 1 32 32 H 0.97005 * 119.99846 * 359.72750 * 6 4 2 33 33 H 1.08998 * 109.47134 * 299.99552 * 7 6 4 34 34 H 1.08994 * 109.47397 * 59.99843 * 7 6 4 35 35 H 1.08000 * 126.90979 * 359.97438 * 9 8 7 36 36 H 1.09003 * 112.93870 * 145.63155 * 11 10 9 37 37 H 1.08999 * 113.77186 * 336.34625 * 12 11 10 38 38 H 1.08993 * 113.77120 * 107.74492 * 12 11 10 39 39 H 0.96998 * 120.00078 * 180.02562 * 17 16 14 40 40 H 1.09002 * 113.76889 * 221.14980 * 22 13 12 41 41 H 1.09000 * 113.86794 * 89.77341 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7103 1.2304 5 8 2.7338 -0.1224 2.0262 6 7 1.7069 -2.0007 1.4437 7 6 2.2002 -2.6930 2.6369 8 6 1.6974 -4.1137 2.6372 9 6 2.3493 -5.2038 2.1696 10 7 1.5236 -6.2552 2.3781 11 6 1.8069 -7.6507 2.0338 12 6 3.2864 -7.9197 1.7044 13 7 2.7812 -8.7573 0.5963 14 6 3.2842 -9.8155 -0.1125 15 1 2.6966 -10.2676 -0.8978 16 6 4.5492 -10.3073 0.1786 17 7 5.2650 -9.7567 1.1361 18 14 5.2352 -11.7513 -0.7878 19 1 5.9752 -11.2472 -1.9725 20 1 6.1567 -12.5320 0.0761 21 1 4.1188 -12.6224 -1.2352 22 6 1.5166 -7.9971 0.5622 23 7 0.4443 -5.8179 2.9265 24 7 0.5164 -4.5446 3.0944 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.1459 -2.4710 0.8072 33 1 3.2902 -2.6939 2.6318 34 1 1.8414 -2.1800 3.5291 35 1 3.3320 -5.2295 1.7222 36 1 1.3796 -8.3587 2.7439 37 1 3.8307 -7.0352 1.3736 38 1 3.8132 -8.4810 2.4760 39 1 6.1492 -10.1001 1.3392 40 1 0.6331 -8.6202 0.4235 41 1 1.5380 -7.1352 -0.1046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107126219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:04 Heat of formation + Delta-G solvation = 88.245311 kcal Electronic energy + Delta-G solvation = -22906.537239 eV Core-core repulsion = 19438.648811 eV Total energy + Delta-G solvation = -3467.888428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.35964 -40.86693 -39.94026 -36.36020 -35.41667 -34.94208 -33.64026 -32.36939 -29.71446 -28.32476 -27.70279 -26.83522 -26.01883 -24.11927 -23.41601 -22.29699 -21.14287 -20.90197 -19.04313 -18.52451 -17.95831 -17.54131 -16.97579 -16.76591 -16.51981 -15.98218 -15.73974 -15.37945 -14.90291 -14.79972 -14.42112 -14.17342 -13.80163 -13.64688 -13.44853 -13.38266 -13.14058 -12.97531 -12.83978 -12.76007 -12.62705 -12.44004 -12.11059 -12.03159 -11.95134 -11.80117 -11.72241 -11.07238 -10.93945 -10.84538 -10.26749 -10.12739 -9.10919 -8.00931 -5.36253 0.56061 1.23749 1.28763 1.48773 1.50141 1.57697 1.65390 2.40932 2.43676 3.07288 3.11709 3.31296 3.33397 3.71531 3.75207 3.91169 3.98599 4.04269 4.09598 4.15432 4.43915 4.51790 4.57633 4.62534 4.69461 4.79608 4.90587 4.91961 4.97283 5.00386 5.04717 5.09820 5.11568 5.29723 5.34413 5.36675 5.41868 5.65689 5.77290 6.51875 6.80364 7.22516 7.45118 7.48929 8.33690 9.15780 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002964 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.930280 B = 9443.110743 C = 9977.604401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.131 4.131 4 C 0.514 3.486 5 O -0.583 6.583 6 N -0.716 5.716 7 C 0.218 3.782 8 C -0.049 4.049 9 C -0.013 4.013 10 N -0.268 5.268 11 C 0.105 3.895 12 C 0.165 3.835 13 N -0.628 5.628 14 C -0.238 4.238 15 H 0.091 0.909 16 C -0.056 4.056 17 N -0.948 5.948 18 Si 0.979 3.021 19 H -0.286 1.286 20 H -0.295 1.295 21 H -0.267 1.267 22 C 0.126 3.874 23 N -0.107 5.107 24 N -0.281 5.281 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.411 0.589 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.207 0.793 36 H 0.138 0.862 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.253 0.747 40 H 0.076 0.924 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 15.506 -3.249 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.189 4.189 4 C 0.302 3.698 5 O -0.463 6.463 6 N -0.368 5.368 7 C 0.092 3.908 8 C -0.188 4.188 9 C -0.167 4.167 10 N -0.061 5.061 11 C 0.002 3.998 12 C 0.039 3.961 13 N -0.355 5.355 14 C -0.366 4.366 15 H 0.109 0.891 16 C -0.250 4.250 17 N -0.596 5.596 18 Si 0.807 3.193 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.192 1.192 22 C 0.000 4.000 23 N -0.086 5.086 24 N -0.148 5.148 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.247 0.753 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.224 0.776 36 H 0.156 0.844 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.491 15.226 -2.189 17.571 hybrid contribution 1.544 -1.041 -0.851 2.047 sum -6.947 14.185 -3.040 16.085 Atomic orbital electron populations 1.21796 0.91596 1.03087 1.03445 1.21375 0.98541 0.97716 0.95530 1.21615 1.01027 0.93715 1.02546 1.21331 0.79118 0.81210 0.88140 1.90683 1.39777 1.66931 1.48936 1.46029 1.53391 1.12041 1.25342 1.19241 0.98992 0.83486 0.89056 1.21916 0.93345 0.97096 1.06469 1.23825 1.00968 0.86109 1.05761 1.47719 1.11149 1.09948 1.37251 1.24699 1.00466 0.75737 0.98877 1.22614 0.89612 0.93267 0.90633 1.45907 1.16053 1.33315 1.40204 1.19339 0.99095 1.05158 1.13013 0.89099 1.25598 0.97090 1.02291 1.00008 1.69913 1.11953 1.44213 1.33502 0.85071 0.78070 0.78716 0.77408 1.21280 1.22145 1.19212 1.23020 0.90910 0.94980 0.91129 1.78283 1.08442 1.05985 1.15905 1.75009 1.19078 1.02079 1.18590 0.92978 0.89397 0.91672 0.86349 0.93184 0.89664 0.93333 0.75322 0.88825 0.90484 0.77613 0.84435 0.93512 0.91840 0.93804 0.90571 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.09 71.98 0.65 -0.97 16 2 C -0.11 -1.60 3.26 -11.54 -0.04 -1.64 16 3 C -0.13 -1.98 8.48 71.98 0.61 -1.36 16 4 C 0.51 11.22 7.15 87.65 0.63 11.85 16 5 O -0.58 -17.50 15.98 -3.04 -0.05 -17.55 16 6 N -0.72 -14.26 5.44 -466.79 -2.54 -16.81 16 7 C 0.22 4.94 6.23 85.63 0.53 5.48 16 8 C -0.05 -1.29 6.61 41.60 0.28 -1.01 16 9 C -0.01 -0.36 10.72 83.49 0.89 0.54 16 10 N -0.27 -8.19 3.54 -332.05 -1.18 -9.36 16 11 C 0.10 3.41 5.14 46.74 0.24 3.65 16 12 C 0.17 6.63 6.90 86.44 0.60 7.22 16 13 N -0.63 -28.11 3.70 -716.72 -2.65 -30.76 16 14 C -0.24 -12.01 10.70 84.03 0.90 -11.11 16 15 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 16 C -0.06 -2.89 5.50 84.86 0.47 -2.43 16 17 N -0.95 -52.00 11.39 21.65 0.25 -51.75 16 18 Si 0.98 42.12 29.55 68.60 2.03 44.15 16 19 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 C 0.13 4.33 8.74 86.48 0.76 5.09 16 23 N -0.11 -3.54 13.17 37.02 0.49 -3.05 16 24 N -0.28 -8.84 12.41 -48.60 -0.60 -9.44 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.70 7.56 -2.38 -0.02 0.69 16 28 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 32 H 0.41 6.88 7.87 -92.70 -0.73 6.15 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.21 4.79 6.74 -2.91 -0.02 4.77 16 36 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 37 H 0.05 1.81 6.31 -2.39 -0.02 1.80 16 38 H 0.06 2.92 7.16 -2.39 -0.02 2.90 16 39 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 40 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.75 346.29 2.57 -62.18 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.31 Total: 17.09 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 6.52 Total: 15.30 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -6.24 Total: -121.18 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.05 Total: -17.55 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -64.75 2.57 -62.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107126219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.430 kcal (2) G-P(sol) polarization free energy of solvation -64.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds