Wall clock time and date at job start Tue Mar 31 2020 03:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 C 1.34774 * 120.59110 * 124.62153 * 12 11 10 14 14 O 1.21286 * 119.99766 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00284 * 0.02618 * 13 12 11 16 16 C 1.52999 * 109.47080 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47232 * 179.97438 * 16 15 13 18 18 N 1.46492 * 109.47388 * 179.97438 * 17 16 15 19 19 C 1.35310 * 125.86986 * 124.71637 * 18 17 16 20 20 C 1.35353 * 106.17810 * 179.90501 * 19 18 17 21 21 N 1.33768 * 106.49288 * 0.35244 * 20 19 18 22 22 N 1.28634 * 108.89001 * 359.77520 * 21 20 19 23 23 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 24 24 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 25 25 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 27 27 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 28 28 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 29 29 H 1.09004 * 109.67411 * 169.38330 * 11 10 9 30 30 H 1.08997 * 109.46855 * 299.99436 * 15 13 12 31 31 H 1.08994 * 109.46932 * 59.99795 * 15 13 12 32 32 H 1.09005 * 109.47132 * 300.00163 * 16 15 13 33 33 H 1.08999 * 109.46990 * 59.99788 * 16 15 13 34 34 H 1.08997 * 109.46890 * 300.00561 * 17 16 15 35 35 H 1.09010 * 109.46818 * 59.99708 * 17 16 15 36 36 H 1.08001 * 126.91154 * 0.02562 * 19 18 17 37 37 H 1.08001 * 126.74964 * 180.12295 * 20 19 18 38 38 H 1.09004 * 109.60829 * 295.48016 * 23 12 11 39 39 H 1.08995 * 109.61517 * 174.97194 * 23 12 11 40 40 H 1.09001 * 109.60662 * 354.94142 * 24 9 7 41 41 H 1.08998 * 109.61756 * 115.28412 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 6 5.8770 -2.4918 3.4054 14 8 6.7202 -3.2946 3.0655 15 6 6.1049 -1.6278 4.6189 16 6 7.4658 -1.9608 5.2338 17 6 7.6975 -1.0832 6.4655 18 7 9.0002 -1.4025 7.0546 19 6 9.9974 -0.5212 7.2987 20 6 11.0083 -1.2371 7.8442 21 7 10.5885 -2.5060 7.8992 22 7 9.3949 -2.5707 7.4239 23 6 4.5005 -3.2084 1.5123 24 6 4.1992 -2.2929 0.3191 25 1 -0.4850 0.8400 -0.0004 26 1 4.2586 0.1714 1.7186 27 1 2.5201 0.1137 2.1099 28 1 2.7995 -1.9334 3.3902 29 1 4.0688 -0.8087 3.9359 30 1 6.0852 -0.5780 4.3263 31 1 5.3199 -1.8157 5.3513 32 1 7.4851 -3.0107 5.5264 33 1 8.2510 -1.7733 4.5015 34 1 7.6782 -0.0336 6.1724 35 1 6.9121 -1.2704 7.1979 36 1 9.9879 0.5404 7.1001 37 1 11.9668 -0.8588 8.1677 38 1 3.6505 -3.8667 1.6921 39 1 5.3890 -3.8034 1.3016 40 1 3.8352 -2.8898 -0.5171 41 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112958659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:38 Heat of formation + Delta-G solvation = 99.368138 kcal Electronic energy + Delta-G solvation = -23225.548456 eV Core-core repulsion = 19758.142351 eV Total energy + Delta-G solvation = -3467.406106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.46044 -39.93815 -37.27212 -36.04501 -34.03857 -32.94373 -31.65864 -31.26538 -30.74513 -28.25992 -26.92464 -24.15300 -23.31830 -23.09434 -22.73221 -21.43528 -20.60715 -18.84102 -17.96705 -17.19026 -16.67462 -16.34400 -15.86646 -15.66597 -15.23634 -14.97327 -14.63151 -14.38618 -14.26114 -13.79760 -13.56535 -13.22005 -12.82367 -12.73337 -12.32301 -12.26347 -12.19378 -11.90900 -11.78029 -11.28758 -11.13017 -11.05727 -10.88935 -10.56014 -10.45681 -10.36441 -10.27064 -9.64466 -9.60534 -9.58384 -8.81558 -8.31245 -7.11465 -6.18502 -3.37514 1.35333 2.05093 2.35833 2.75824 3.18694 3.27455 3.39963 3.45066 4.02175 4.23172 4.31845 4.42906 4.54056 4.74039 4.74825 4.81616 4.86579 4.93204 4.96626 5.14123 5.25311 5.40316 5.48297 5.52733 5.66944 5.72172 5.81364 5.86476 5.94921 5.98513 6.03527 6.17134 6.29767 6.41895 6.48556 6.65780 6.82965 7.66145 7.78860 8.16276 8.28122 8.33129 8.79270 9.57683 9.97390 10.95835 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028560 B = 0.003025 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.147905 B = 9253.393963 C = 9840.258268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.040 3.960 3 Si 0.835 3.165 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.259 1.259 7 C -0.277 4.277 8 H 0.083 0.917 9 N -0.599 5.599 10 C 0.131 3.869 11 C 0.085 3.915 12 N -0.598 5.598 13 C 0.510 3.490 14 O -0.554 6.554 15 C -0.137 4.137 16 C -0.116 4.116 17 C 0.113 3.887 18 N -0.288 5.288 19 C -0.052 4.052 20 C -0.055 4.055 21 N -0.276 5.276 22 N -0.080 5.080 23 C 0.095 3.905 24 C 0.132 3.868 25 H 0.264 0.736 26 H 0.032 0.968 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.190 0.810 37 H 0.189 0.811 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.084 2.501 13.938 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.162 4.162 3 Si 0.661 3.339 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.404 4.404 8 H 0.100 0.900 9 N -0.323 5.323 10 C 0.004 3.996 11 C -0.040 4.040 12 N -0.331 5.331 13 C 0.298 3.702 14 O -0.433 6.433 15 C -0.178 4.178 16 C -0.155 4.155 17 C -0.008 4.008 18 N -0.081 5.081 19 C -0.203 4.203 20 C -0.213 4.213 21 N -0.141 5.141 22 N -0.060 5.060 23 C -0.028 4.028 24 C 0.006 3.994 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.207 0.793 37 H 0.206 0.794 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 13.917 0.659 13.836 19.635 hybrid contribution 0.436 2.545 -0.328 2.603 sum 14.353 3.204 13.508 19.968 Atomic orbital electron populations 1.70121 1.06227 1.27010 1.48268 1.25215 0.94785 0.97454 0.98747 0.87605 0.81989 0.86082 0.78176 1.21940 1.21998 1.18335 1.18772 0.96445 0.96939 1.28211 0.89951 1.44300 1.18092 1.42735 1.27151 1.21785 0.99633 0.92187 0.85974 1.22620 0.90981 0.91712 0.98686 1.48042 1.17809 1.38891 1.28315 1.20401 0.81516 0.83799 0.84480 1.90683 1.43961 1.38324 1.70296 1.21564 0.98236 1.01141 0.96833 1.21599 0.97465 1.01356 0.95078 1.22253 0.80065 1.01711 0.96776 1.47553 1.14182 1.06287 1.40110 1.23732 0.89861 0.99138 1.07573 1.23640 1.01577 0.90326 1.05719 1.75139 1.03309 1.19350 1.16341 1.78345 1.08351 1.04780 1.14516 1.22209 1.01348 0.93626 0.85640 1.21350 0.91844 0.91747 0.94506 0.92648 0.95012 0.90366 0.90765 0.90718 0.88482 0.88373 0.89124 0.90238 0.87356 0.87922 0.79285 0.79437 0.91432 0.89682 0.90690 0.95649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 13.97 55.49 0.78 -24.31 16 2 C 0.04 1.07 4.80 -17.43 -0.08 0.98 16 3 Si 0.83 19.80 26.47 -169.99 -4.50 15.30 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -5.76 4.99 56.52 0.28 -5.48 16 7 C -0.28 -7.21 9.84 -15.06 -0.15 -7.36 16 8 H 0.08 2.31 8.05 -52.49 -0.42 1.88 16 9 N -0.60 -13.20 2.71 -171.76 -0.47 -13.66 16 10 C 0.13 2.51 4.58 -3.36 -0.02 2.49 16 11 C 0.08 1.26 6.52 -3.36 -0.02 1.24 16 12 N -0.60 -9.38 2.95 -172.21 -0.51 -9.88 16 13 C 0.51 7.50 7.70 -10.98 -0.08 7.42 16 14 O -0.55 -10.05 15.39 5.55 0.09 -9.97 16 15 C -0.14 -1.29 4.04 -27.88 -0.11 -1.40 16 16 C -0.12 -1.10 4.63 -26.73 -0.12 -1.22 16 17 C 0.11 0.73 6.45 -4.05 -0.03 0.70 16 18 N -0.29 -2.72 3.44 -61.26 -0.21 -2.93 16 19 C -0.05 -0.39 11.57 -17.05 -0.20 -0.58 16 20 C -0.06 -0.50 12.05 -17.74 -0.21 -0.71 16 21 N -0.28 -3.61 12.41 30.24 0.38 -3.24 16 22 N -0.08 -1.04 12.91 60.35 0.78 -0.26 16 23 C 0.10 1.60 6.59 -3.60 -0.02 1.58 16 24 C 0.13 2.49 6.67 -3.60 -0.02 2.47 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.03 0.61 6.78 -51.93 -0.35 0.26 16 27 H 0.08 1.61 5.60 -51.93 -0.29 1.32 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.81 5.91 -51.93 -0.31 0.50 16 30 H 0.10 0.73 7.72 -51.93 -0.40 0.33 16 31 H 0.10 0.72 7.91 -51.93 -0.41 0.31 16 32 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.11 0.37 8.07 -51.93 -0.42 -0.05 16 35 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.19 0.61 8.06 -52.49 -0.42 0.18 16 37 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.41 6.99 -51.93 -0.36 1.05 16 40 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -34.58 333.03 -5.73 -40.32 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -6.01 Total: -1.98 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.08 Total: 5.60 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.75 Total: -54.29 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.50 Total: 15.30 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.58 -5.73 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112958659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.684 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds