Wall clock time and date at job start Tue Mar 31 2020 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 C 1.34774 * 120.59110 * 124.62153 * 12 11 10 14 14 O 1.21286 * 119.99766 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00284 * 0.02618 * 13 12 11 16 16 C 1.52999 * 109.47080 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47232 * 179.97438 * 16 15 13 18 18 N 1.46492 * 109.47388 * 179.97438 * 17 16 15 19 19 C 1.35310 * 125.86986 * 124.71637 * 18 17 16 20 20 C 1.35353 * 106.17810 * 179.90501 * 19 18 17 21 21 N 1.33768 * 106.49288 * 0.35244 * 20 19 18 22 22 N 1.28634 * 108.89001 * 359.77520 * 21 20 19 23 23 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 24 24 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 25 25 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 27 27 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 28 28 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 29 29 H 1.09004 * 109.67411 * 169.38330 * 11 10 9 30 30 H 1.08997 * 109.46855 * 299.99436 * 15 13 12 31 31 H 1.08994 * 109.46932 * 59.99795 * 15 13 12 32 32 H 1.09005 * 109.47132 * 300.00163 * 16 15 13 33 33 H 1.08999 * 109.46990 * 59.99788 * 16 15 13 34 34 H 1.08997 * 109.46890 * 300.00561 * 17 16 15 35 35 H 1.09010 * 109.46818 * 59.99708 * 17 16 15 36 36 H 1.08001 * 126.91154 * 0.02562 * 19 18 17 37 37 H 1.08001 * 126.74964 * 180.12295 * 20 19 18 38 38 H 1.09004 * 109.60829 * 295.48016 * 23 12 11 39 39 H 1.08995 * 109.61517 * 174.97194 * 23 12 11 40 40 H 1.09001 * 109.60662 * 354.94142 * 24 9 7 41 41 H 1.08998 * 109.61756 * 115.28412 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 6 5.8770 -2.4918 3.4054 14 8 6.7202 -3.2946 3.0655 15 6 6.1049 -1.6278 4.6189 16 6 7.4658 -1.9608 5.2338 17 6 7.6975 -1.0832 6.4655 18 7 9.0002 -1.4025 7.0546 19 6 9.9974 -0.5212 7.2987 20 6 11.0083 -1.2371 7.8442 21 7 10.5885 -2.5060 7.8992 22 7 9.3949 -2.5707 7.4239 23 6 4.5005 -3.2084 1.5123 24 6 4.1992 -2.2929 0.3191 25 1 -0.4850 0.8400 -0.0004 26 1 4.2586 0.1714 1.7186 27 1 2.5201 0.1137 2.1099 28 1 2.7995 -1.9334 3.3902 29 1 4.0688 -0.8087 3.9359 30 1 6.0852 -0.5780 4.3263 31 1 5.3199 -1.8157 5.3513 32 1 7.4851 -3.0107 5.5264 33 1 8.2510 -1.7733 4.5015 34 1 7.6782 -0.0336 6.1724 35 1 6.9121 -1.2704 7.1979 36 1 9.9879 0.5404 7.1001 37 1 11.9668 -0.8588 8.1677 38 1 3.6505 -3.8667 1.6921 39 1 5.3890 -3.8034 1.3016 40 1 3.8352 -2.8898 -0.5171 41 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112958659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:37 Heat of formation + Delta-G solvation = 74.205989 kcal Electronic energy + Delta-G solvation = -23226.639569 eV Core-core repulsion = 19758.142351 eV Total energy + Delta-G solvation = -3468.497218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.12602 -41.14272 -38.67699 -36.77129 -35.61826 -33.89793 -33.35838 -32.14174 -31.90333 -29.35116 -28.17742 -25.48794 -24.77241 -24.13317 -23.46795 -22.30321 -21.79678 -20.13484 -18.98798 -18.30652 -17.81322 -17.38028 -16.94130 -16.77953 -16.58916 -15.99335 -15.87399 -15.60143 -15.25061 -15.02996 -14.70841 -14.65169 -14.19362 -14.07345 -13.67982 -13.32684 -13.15240 -12.91118 -12.71893 -12.54735 -12.45876 -12.21520 -12.08562 -12.00295 -11.87187 -11.74581 -11.39587 -11.05778 -10.80202 -10.65805 -10.29140 -9.85400 -8.87499 -8.22622 -5.38856 0.72637 1.36913 1.50264 1.52655 1.55758 1.64903 1.67322 2.05389 2.45555 2.94565 3.38359 3.39859 3.61472 3.76156 3.87470 4.03654 4.13543 4.21731 4.24334 4.35453 4.36033 4.38159 4.41214 4.46778 4.57619 4.59391 4.73528 4.79375 4.80726 4.90293 5.01039 5.02824 5.19055 5.20130 5.32932 5.52071 5.74529 5.85819 6.11010 6.50277 6.90761 7.18225 7.57807 7.62832 8.04821 8.95451 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028560 B = 0.003025 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.147905 B = 9253.393963 C = 9840.258268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.012 4.012 3 Si 0.903 3.097 4 H -0.308 1.308 5 H -0.290 1.290 6 H -0.231 1.231 7 C -0.269 4.269 8 H 0.045 0.955 9 N -0.614 5.614 10 C 0.122 3.878 11 C 0.096 3.904 12 N -0.604 5.604 13 C 0.505 3.495 14 O -0.595 6.595 15 C -0.128 4.128 16 C -0.108 4.108 17 C 0.111 3.889 18 N -0.288 5.288 19 C -0.033 4.033 20 C -0.072 4.072 21 N -0.321 5.321 22 N -0.132 5.132 23 C 0.104 3.896 24 C 0.133 3.867 25 H 0.264 0.736 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.153 0.847 35 H 0.121 0.879 36 H 0.239 0.761 37 H 0.215 0.785 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.587 5.425 16.028 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.210 4.210 3 Si 0.730 3.270 4 H -0.237 1.237 5 H -0.217 1.217 6 H -0.155 1.155 7 C -0.398 4.398 8 H 0.063 0.937 9 N -0.338 5.338 10 C -0.003 4.003 11 C -0.028 4.028 12 N -0.336 5.336 13 C 0.296 3.704 14 O -0.476 6.476 15 C -0.167 4.167 16 C -0.147 4.147 17 C -0.008 4.008 18 N -0.082 5.082 19 C -0.185 4.185 20 C -0.230 4.230 21 N -0.186 5.186 22 N -0.111 5.111 23 C -0.021 4.021 24 C 0.008 3.992 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.171 0.829 35 H 0.139 0.861 36 H 0.255 0.745 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 15.449 3.566 15.962 22.498 hybrid contribution 0.005 1.570 -1.030 1.878 sum 15.454 5.136 14.932 22.094 Atomic orbital electron populations 1.70205 1.07881 1.27674 1.51218 1.25728 0.95232 1.00508 0.99506 0.86527 0.81842 0.81460 0.77175 1.23713 1.21661 1.15464 1.18667 0.97498 0.95868 1.27738 0.93676 1.44416 1.17622 1.43654 1.28109 1.21914 0.99256 0.92785 0.86376 1.22538 0.90998 0.91114 0.98166 1.48143 1.18567 1.38896 1.28029 1.21397 0.80131 0.83592 0.85330 1.90676 1.45131 1.40249 1.71576 1.21639 0.98886 1.01549 0.94673 1.21424 0.97049 1.00244 0.95980 1.22531 0.79459 1.03221 0.95580 1.47844 1.15298 1.05804 1.39298 1.24497 0.88239 1.00704 1.05019 1.24284 1.03342 0.89368 1.06017 1.75060 1.04018 1.21893 1.17663 1.78285 1.08955 1.06902 1.16966 1.21934 1.01049 0.93303 0.85792 1.21382 0.90990 0.91432 0.95438 0.92734 0.94035 0.91781 0.91459 0.85263 0.84991 0.85231 0.92516 0.92419 0.82896 0.86068 0.74519 0.76816 0.91971 0.89714 0.91367 0.95303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.24 13.97 21.65 0.30 -53.94 16 2 C -0.01 -0.63 4.80 84.86 0.41 -0.22 16 3 Si 0.90 40.71 26.47 68.60 1.82 42.52 16 4 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.23 -9.27 4.99 99.48 0.50 -8.77 16 7 C -0.27 -14.25 9.84 84.04 0.83 -13.42 16 8 H 0.05 2.66 8.05 -2.91 -0.02 2.64 16 9 N -0.61 -26.51 2.71 -697.32 -1.89 -28.40 16 10 C 0.12 4.32 4.58 86.56 0.40 4.72 16 11 C 0.10 2.47 6.52 86.56 0.56 3.03 16 12 N -0.60 -17.35 2.95 -817.13 -2.41 -19.76 16 13 C 0.50 13.47 7.70 87.66 0.67 14.15 16 14 O -0.59 -21.11 15.39 -3.05 -0.05 -21.16 16 15 C -0.13 -1.77 4.04 29.85 0.12 -1.65 16 16 C -0.11 -1.74 4.63 30.59 0.14 -1.59 16 17 C 0.11 0.94 6.45 86.38 0.56 1.49 16 18 N -0.29 -4.67 3.44 -347.74 -1.20 -5.86 16 19 C -0.03 -0.37 11.57 83.49 0.97 0.60 16 20 C -0.07 -1.16 12.05 83.73 1.01 -0.15 16 21 N -0.32 -8.38 12.41 -58.26 -0.72 -9.10 16 22 N -0.13 -3.39 12.91 37.02 0.48 -2.91 16 23 C 0.10 3.41 6.59 86.42 0.57 3.98 16 24 C 0.13 4.98 6.67 86.42 0.58 5.56 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.04 1.41 6.78 -2.39 -0.02 1.39 16 27 H 0.06 2.46 5.60 -2.39 -0.01 2.45 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.13 1.95 5.91 -2.39 -0.01 1.94 16 30 H 0.13 1.03 7.72 -2.39 -0.02 1.01 16 31 H 0.13 1.09 7.91 -2.39 -0.02 1.07 16 32 H 0.06 1.30 8.08 -2.38 -0.02 1.29 16 33 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.15 -0.04 8.07 -2.39 -0.02 -0.06 16 35 H 0.12 0.62 8.14 -2.38 -0.02 0.61 16 36 H 0.24 0.04 8.06 -2.91 -0.02 0.02 16 37 H 0.22 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.08 2.79 6.99 -2.39 -0.02 2.78 16 40 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -81.51 333.03 3.96 -77.55 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 0.82 Total: 4.58 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 6.81 Total: 16.48 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -5.43 Total: -119.97 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.82 Total: 42.52 kcal Total: -81.51 3.96 -77.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112958659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.755 kcal (2) G-P(sol) polarization free energy of solvation -81.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds