Wall clock time and date at job start Tue Mar 31 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 120.00057 * 2 1 4 4 O 1.21277 * 120.00228 * 4.99562 * 3 2 1 5 5 C 1.50704 * 119.99872 * 184.99051 * 3 2 1 6 6 C 1.50691 * 115.56241 * 326.56814 * 5 3 2 7 7 O 1.21278 * 120.00180 * 91.03434 * 6 5 3 8 8 N 1.34783 * 120.00381 * 271.03384 * 6 5 3 9 9 C 1.46491 * 120.00505 * 184.29559 * 8 6 5 10 10 H 1.09009 * 115.51581 * 9.58832 * 9 8 6 11 11 C 1.52997 * 117.44742 * 224.23899 * 9 8 6 12 12 H 1.09003 * 119.53683 * 4.12262 * 11 9 8 13 13 C 1.57692 * 116.11393 * 161.63536 * 11 9 8 14 14 N 1.48149 * 104.67029 * 87.31289 * 13 11 9 15 15 C 1.36940 * 127.83635 * 139.77731 * 14 13 11 16 16 H 1.07994 * 119.99781 * 191.77100 * 15 14 13 17 17 C 1.38816 * 119.99907 * 11.76676 * 15 14 13 18 18 N 1.31614 * 120.00340 * 6.50047 * 17 15 14 19 19 Si 1.86802 * 119.99616 * 186.49878 * 17 15 14 20 20 H 1.48493 * 109.47115 * 94.98448 * 19 17 15 21 21 H 1.48502 * 109.46848 * 214.98517 * 19 17 15 22 22 H 1.48503 * 109.47028 * 334.98166 * 19 17 15 23 23 C 1.48140 * 104.32574 * 319.77342 * 14 13 11 24 24 C 1.52997 * 117.44236 * 154.99691 * 9 8 6 25 25 H 1.08999 * 119.54237 * 355.89122 * 24 9 8 26 26 C 1.53000 * 117.49627 * 180.87607 * 5 3 2 27 27 C 1.52993 * 59.99957 * 252.51331 * 26 5 3 28 28 H 1.09002 * 109.47472 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47119 * 300.00067 * 1 2 3 30 30 H 1.09002 * 109.47095 * 59.99837 * 1 2 3 31 31 H 0.97001 * 119.99917 * 180.02562 * 2 1 3 32 32 H 0.97000 * 119.99065 * 4.29530 * 8 6 5 33 33 H 1.08990 * 110.92448 * 328.23534 * 13 11 9 34 34 H 1.09004 * 109.93423 * 205.89026 * 13 11 9 35 35 H 0.96993 * 120.00283 * 180.02562 * 18 17 15 36 36 H 1.08999 * 110.40980 * 280.80807 * 23 14 13 37 37 H 1.08995 * 110.41120 * 158.37054 * 23 14 13 38 38 H 1.09004 * 117.49800 * 145.02179 * 26 5 3 39 39 H 1.09006 * 117.50098 * 0.02562 * 26 5 3 40 40 H 1.09002 * 117.49593 * 107.49312 * 27 26 5 41 41 H 1.09001 * 117.49897 * 252.48853 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 0.0915 5 6 3.6416 1.1696 -0.1135 6 6 4.3445 0.0047 0.5343 7 8 4.5771 -0.9969 -0.1087 8 7 4.7148 0.0758 1.8283 9 6 5.4807 -1.0172 2.4322 10 1 5.8510 -1.7710 1.7374 11 6 5.0569 -1.4901 3.8242 12 1 4.1724 -1.0581 4.2923 13 6 5.5725 -2.9152 4.2599 14 7 6.9015 -2.6647 4.8648 15 6 7.4400 -3.2481 5.9805 16 1 8.3374 -2.8413 6.4228 17 6 6.8325 -4.3623 6.5430 18 7 5.8158 -4.9351 5.9344 19 14 7.4581 -5.0486 8.1638 20 1 6.6571 -4.4874 9.2812 21 1 7.3299 -6.5281 8.1572 22 1 8.8847 -4.6762 8.3414 23 6 7.5156 -1.6399 3.9888 24 6 6.3573 -0.6805 3.6401 25 1 6.4415 0.3546 3.9713 26 6 4.3498 2.5256 -0.0871 27 6 4.2522 1.7390 -1.3956 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 4.4740 0.8508 2.3596 33 1 5.6657 -3.5757 3.3979 34 1 4.8947 -3.3464 4.9967 35 1 5.3910 -5.7134 6.3277 36 1 7.9122 -2.1012 3.0844 37 1 8.3032 -1.1070 4.5215 38 1 5.3243 2.5751 0.3990 39 1 3.7289 3.4159 0.0129 40 1 3.5670 2.1118 -2.1570 41 1 5.1625 1.2712 -1.7708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114971049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:26 Heat of formation + Delta-G solvation = 20.754248 kcal Electronic energy + Delta-G solvation = -23369.011405 eV Core-core repulsion = 19865.903594 eV Total energy + Delta-G solvation = -3503.107811 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.92086 -39.38738 -38.28396 -36.35302 -34.78943 -34.55934 -32.65186 -30.32446 -28.01622 -27.03203 -25.92509 -24.62968 -22.84731 -22.37340 -21.18722 -20.52160 -19.81735 -19.36229 -18.31705 -16.92615 -16.63716 -16.39120 -15.96838 -15.45804 -15.03991 -14.79111 -14.46935 -14.21804 -13.72266 -13.40260 -13.25187 -13.14071 -12.79141 -12.53757 -12.32013 -11.94781 -11.64056 -11.50307 -11.44983 -11.08578 -10.90453 -10.87014 -10.38950 -10.34847 -10.27849 -10.17869 -9.83910 -9.77112 -9.42097 -9.24650 -8.80892 -8.43165 -6.94918 -5.80969 -3.17463 2.09619 2.32024 2.80969 2.86462 3.36067 3.41297 3.43585 3.48648 4.20870 4.32940 4.34947 4.42379 4.49795 4.51608 4.97307 5.09524 5.22722 5.24401 5.30988 5.33304 5.34373 5.48594 5.52157 5.52585 5.74588 5.75078 5.83104 5.99126 6.07970 6.12175 6.45134 6.61709 6.70400 6.81117 7.13929 7.30959 7.40800 7.50741 7.69865 7.85200 8.06322 8.18725 9.07675 9.69807 10.44406 11.30827 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.003225 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.812868 B = 8679.706219 C = 9250.459217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.727 5.727 3 C 0.562 3.438 4 O -0.534 6.534 5 C -0.201 4.201 6 C 0.552 3.448 7 O -0.526 6.526 8 N -0.687 5.687 9 C 0.090 3.910 10 H 0.133 0.867 11 C -0.180 4.180 12 H 0.105 0.895 13 C 0.181 3.819 14 N -0.594 5.594 15 C -0.226 4.226 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.917 5.917 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.157 3.843 24 C -0.183 4.183 25 H 0.102 0.898 26 C -0.133 4.133 27 C -0.117 4.117 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.409 0.591 32 H 0.401 0.599 33 H 0.027 0.973 34 H 0.103 0.897 35 H 0.255 0.745 36 H 0.028 0.972 37 H 0.052 0.948 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 12.975 -12.566 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.378 5.378 3 C 0.347 3.653 4 O -0.411 6.411 5 C -0.207 4.207 6 C 0.336 3.664 7 O -0.402 6.402 8 N -0.335 5.335 9 C -0.016 4.016 10 H 0.150 0.850 11 C -0.202 4.202 12 H 0.123 0.877 13 C 0.055 3.945 14 N -0.317 5.317 15 C -0.354 4.354 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.564 5.564 19 Si 0.746 3.254 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.030 3.970 24 C -0.204 4.204 25 H 0.120 0.880 26 C -0.171 4.171 27 C -0.155 4.155 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.244 0.756 32 H 0.235 0.765 33 H 0.045 0.955 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.919 12.757 -12.783 19.340 hybrid contribution 0.235 -0.341 1.179 1.250 sum -6.684 12.417 -11.603 18.262 Atomic orbital electron populations 1.21597 0.78944 1.02731 1.02372 1.45770 1.08123 1.08937 1.74993 1.18952 0.86773 0.83857 0.75750 1.90708 1.69255 1.31464 1.49634 1.21508 0.93186 0.97797 1.08225 1.19127 0.78644 0.86828 0.81810 1.90744 1.54823 1.31458 1.63146 1.45405 1.55010 1.22402 1.10684 1.21972 0.97847 0.91530 0.90204 0.84963 1.25501 0.97249 1.01208 0.96252 0.87663 1.21832 0.88137 0.87547 0.97003 1.45155 1.13383 1.45065 1.28066 1.19052 1.08637 1.06981 1.00683 0.90304 1.24862 0.98965 0.96919 0.99616 1.69819 1.24961 1.22970 1.38676 0.86046 0.78196 0.78148 0.83049 1.21549 1.21612 1.20504 1.21132 0.92422 0.89654 0.93829 1.24288 0.95710 0.99705 1.00663 0.87962 1.23172 1.01447 0.92459 1.00004 1.23019 1.02419 1.00070 0.89991 0.90238 0.91888 0.92104 0.75572 0.76459 0.95545 0.87932 0.93488 0.95448 0.92918 0.87128 0.86388 0.87247 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.71 59.85 0.64 1.38 16 2 N -0.73 -7.83 5.64 -67.08 -0.38 -8.21 16 3 C 0.56 6.86 7.38 -10.98 -0.08 6.78 16 4 O -0.53 -7.73 16.27 5.56 0.09 -7.64 16 5 C -0.20 -2.19 2.37 -156.82 -0.37 -2.57 16 6 C 0.55 7.30 6.08 -10.99 -0.07 7.23 16 7 O -0.53 -8.65 16.51 5.56 0.09 -8.55 16 8 N -0.69 -8.87 5.56 -53.81 -0.30 -9.17 16 9 C 0.09 1.44 5.91 -67.94 -0.40 1.04 16 10 H 0.13 2.39 7.43 -51.92 -0.39 2.01 16 11 C -0.18 -3.33 7.34 -87.38 -0.64 -3.97 16 12 H 0.11 1.83 8.14 -51.93 -0.42 1.40 16 13 C 0.18 4.29 5.89 -0.57 0.00 4.29 16 14 N -0.59 -14.92 3.39 -166.73 -0.57 -15.48 16 15 C -0.23 -6.17 10.38 -15.06 -0.16 -6.33 16 16 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 17 C -0.01 -0.19 5.44 -17.43 -0.09 -0.29 16 18 N -0.92 -26.41 10.57 55.49 0.59 -25.83 16 19 Si 0.92 21.64 29.56 -169.99 -5.02 16.61 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.16 3.18 7.04 -2.41 -0.02 3.17 16 24 C -0.18 -3.10 6.98 -89.22 -0.62 -3.73 16 25 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 26 C -0.13 -1.15 9.75 -26.73 -0.26 -1.41 16 27 C -0.12 -1.04 9.93 -26.74 -0.27 -1.31 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.41 4.40 7.89 -40.82 -0.32 4.08 16 32 H 0.40 4.37 8.83 -40.82 -0.36 4.01 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 2.73 6.13 -51.93 -0.32 2.41 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 1.02 7.67 -51.93 -0.40 0.62 16 40 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -32.38 347.66 -8.58 -40.97 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.98 Total: 7.77 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.34 Total: 4.29 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.66 Total: -58.69 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.18 Total: -16.20 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.38 -8.58 -40.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114971049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.722 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds