Wall clock time and date at job start Tue Mar 31 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 120.00057 * 2 1 4 4 O 1.21277 * 120.00228 * 4.99562 * 3 2 1 5 5 C 1.50704 * 119.99872 * 184.99051 * 3 2 1 6 6 C 1.50691 * 115.56241 * 326.56814 * 5 3 2 7 7 O 1.21278 * 120.00180 * 91.03434 * 6 5 3 8 8 N 1.34783 * 120.00381 * 271.03384 * 6 5 3 9 9 C 1.46491 * 120.00505 * 184.29559 * 8 6 5 10 10 H 1.09009 * 115.51581 * 9.58832 * 9 8 6 11 11 C 1.52997 * 117.44742 * 224.23899 * 9 8 6 12 12 H 1.09003 * 119.53683 * 4.12262 * 11 9 8 13 13 C 1.57692 * 116.11393 * 161.63536 * 11 9 8 14 14 N 1.48149 * 104.67029 * 87.31289 * 13 11 9 15 15 C 1.36940 * 127.83635 * 139.77731 * 14 13 11 16 16 H 1.07994 * 119.99781 * 191.77100 * 15 14 13 17 17 C 1.38816 * 119.99907 * 11.76676 * 15 14 13 18 18 N 1.31614 * 120.00340 * 6.50047 * 17 15 14 19 19 Si 1.86802 * 119.99616 * 186.49878 * 17 15 14 20 20 H 1.48493 * 109.47115 * 94.98448 * 19 17 15 21 21 H 1.48502 * 109.46848 * 214.98517 * 19 17 15 22 22 H 1.48503 * 109.47028 * 334.98166 * 19 17 15 23 23 C 1.48140 * 104.32574 * 319.77342 * 14 13 11 24 24 C 1.52997 * 117.44236 * 154.99691 * 9 8 6 25 25 H 1.08999 * 119.54237 * 355.89122 * 24 9 8 26 26 C 1.53000 * 117.49627 * 180.87607 * 5 3 2 27 27 C 1.52993 * 59.99957 * 252.51331 * 26 5 3 28 28 H 1.09002 * 109.47472 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47119 * 300.00067 * 1 2 3 30 30 H 1.09002 * 109.47095 * 59.99837 * 1 2 3 31 31 H 0.97001 * 119.99917 * 180.02562 * 2 1 3 32 32 H 0.97000 * 119.99065 * 4.29530 * 8 6 5 33 33 H 1.08990 * 110.92448 * 328.23534 * 13 11 9 34 34 H 1.09004 * 109.93423 * 205.89026 * 13 11 9 35 35 H 0.96993 * 120.00283 * 180.02562 * 18 17 15 36 36 H 1.08999 * 110.40980 * 280.80807 * 23 14 13 37 37 H 1.08995 * 110.41120 * 158.37054 * 23 14 13 38 38 H 1.09004 * 117.49800 * 145.02179 * 26 5 3 39 39 H 1.09006 * 117.50098 * 0.02562 * 26 5 3 40 40 H 1.09002 * 117.49593 * 107.49312 * 27 26 5 41 41 H 1.09001 * 117.49897 * 252.48853 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 0.0915 5 6 3.6416 1.1696 -0.1135 6 6 4.3445 0.0047 0.5343 7 8 4.5771 -0.9969 -0.1087 8 7 4.7148 0.0758 1.8283 9 6 5.4807 -1.0172 2.4322 10 1 5.8510 -1.7710 1.7374 11 6 5.0569 -1.4901 3.8242 12 1 4.1724 -1.0581 4.2923 13 6 5.5725 -2.9152 4.2599 14 7 6.9015 -2.6647 4.8648 15 6 7.4400 -3.2481 5.9805 16 1 8.3374 -2.8413 6.4228 17 6 6.8325 -4.3623 6.5430 18 7 5.8158 -4.9351 5.9344 19 14 7.4581 -5.0486 8.1638 20 1 6.6571 -4.4874 9.2812 21 1 7.3299 -6.5281 8.1572 22 1 8.8847 -4.6762 8.3414 23 6 7.5156 -1.6399 3.9888 24 6 6.3573 -0.6805 3.6401 25 1 6.4415 0.3546 3.9713 26 6 4.3498 2.5256 -0.0871 27 6 4.2522 1.7390 -1.3956 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 4.4740 0.8508 2.3596 33 1 5.6657 -3.5757 3.3979 34 1 4.8947 -3.3464 4.9967 35 1 5.3910 -5.7134 6.3277 36 1 7.9122 -2.1012 3.0844 37 1 8.3032 -1.1070 4.5215 38 1 5.3243 2.5751 0.3990 39 1 3.7289 3.4159 0.0129 40 1 3.5670 2.1118 -2.1570 41 1 5.1625 1.2712 -1.7708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114971049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:24 Heat of formation + Delta-G solvation = -2.639763 kcal Electronic energy + Delta-G solvation = -23370.025845 eV Core-core repulsion = 19865.903594 eV Total energy + Delta-G solvation = -3504.122251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.90302 -40.62268 -39.62161 -37.20130 -36.14014 -35.66881 -34.29847 -32.10542 -28.82650 -28.74756 -27.70226 -25.70405 -23.72686 -23.45061 -22.54447 -21.99094 -20.95622 -20.79233 -19.33089 -18.85919 -17.71136 -17.48272 -16.93509 -16.75997 -16.39710 -15.89587 -15.65824 -15.37169 -15.22875 -14.92950 -14.62399 -14.22814 -13.94525 -13.80750 -13.32695 -13.18991 -13.16931 -12.94536 -12.72528 -12.60084 -12.29720 -12.08866 -11.99454 -11.88123 -11.73722 -11.68997 -11.27571 -10.94309 -10.83581 -10.70883 -10.27447 -9.78636 -8.95145 -7.88495 -5.27324 1.15419 1.30832 1.47768 1.49069 1.58549 1.72785 2.05797 2.48246 2.68298 2.82996 3.27475 3.40657 3.53209 3.60923 3.63717 3.77698 3.84248 3.91845 4.09380 4.35303 4.36527 4.42203 4.55388 4.57378 4.63834 4.77442 4.85023 4.87002 4.89801 4.99840 5.10479 5.26146 5.27072 5.37962 5.44140 5.50356 5.68576 6.19316 6.25754 6.35425 6.93951 7.01230 7.03144 7.68200 8.44360 9.22465 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.003225 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.812868 B = 8679.706219 C = 9250.459217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.727 5.727 3 C 0.559 3.441 4 O -0.560 6.560 5 C -0.213 4.213 6 C 0.558 3.442 7 O -0.559 6.559 8 N -0.675 5.675 9 C 0.116 3.884 10 H 0.113 0.887 11 C -0.187 4.187 12 H 0.121 0.879 13 C 0.183 3.817 14 N -0.618 5.618 15 C -0.238 4.238 16 H 0.086 0.914 17 C -0.064 4.064 18 N -0.949 5.949 19 Si 0.982 3.018 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.266 1.266 23 C 0.149 3.851 24 C -0.161 4.161 25 H 0.138 0.862 26 C -0.116 4.116 27 C -0.110 4.110 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.409 0.591 32 H 0.416 0.584 33 H -0.001 1.001 34 H 0.067 0.933 35 H 0.249 0.751 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 15.138 -12.777 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.377 5.377 3 C 0.345 3.655 4 O -0.439 6.439 5 C -0.220 4.220 6 C 0.344 3.656 7 O -0.437 6.437 8 N -0.324 5.324 9 C 0.010 3.990 10 H 0.130 0.870 11 C -0.208 4.208 12 H 0.139 0.861 13 C 0.057 3.943 14 N -0.342 5.342 15 C -0.367 4.367 16 H 0.104 0.896 17 C -0.257 4.257 18 N -0.598 5.598 19 Si 0.810 3.190 20 H -0.213 1.213 21 H -0.222 1.222 22 H -0.191 1.191 23 C 0.024 3.976 24 C -0.181 4.181 25 H 0.155 0.845 26 C -0.153 4.153 27 C -0.148 4.148 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.244 0.756 32 H 0.253 0.747 33 H 0.017 0.983 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.531 14.965 -13.009 20.876 hybrid contribution 0.118 -1.032 1.152 1.551 sum -6.413 13.933 -11.857 19.386 Atomic orbital electron populations 1.21762 0.77763 1.04317 1.02226 1.45899 1.09083 1.08593 1.74129 1.19142 0.87246 0.83763 0.75360 1.90694 1.69824 1.32244 1.51149 1.21388 0.92310 0.98134 1.10124 1.19445 0.77833 0.86887 0.81405 1.90739 1.56085 1.32985 1.63880 1.45210 1.54472 1.21883 1.10794 1.21492 0.96944 0.91694 0.88908 0.86960 1.25136 0.98748 0.98169 0.98787 0.86072 1.21533 0.87590 0.90283 0.94924 1.45439 1.14437 1.46001 1.28341 1.19459 1.08751 1.07087 1.01384 0.89640 1.25706 0.99492 0.97589 1.02961 1.70043 1.26303 1.23276 1.40136 0.85009 0.78246 0.76776 0.78977 1.21288 1.22231 1.19056 1.21295 0.93914 0.89337 0.93093 1.24196 0.93062 1.00254 1.00611 0.84467 1.23300 1.01659 0.91007 0.99308 1.23164 1.02416 0.99321 0.89917 0.87888 0.92412 0.91823 0.75634 0.74707 0.98302 0.91430 0.94148 0.95774 0.91601 0.85439 0.86102 0.86328 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.71 127.77 1.37 2.67 16 2 N -0.73 -14.81 5.64 -484.52 -2.73 -17.54 16 3 C 0.56 12.80 7.38 87.66 0.65 13.45 16 4 O -0.56 -15.42 16.27 -3.02 -0.05 -15.47 16 5 C -0.21 -4.20 2.37 -53.68 -0.13 -4.33 16 6 C 0.56 13.74 6.08 87.65 0.53 14.27 16 7 O -0.56 -17.84 16.51 -3.02 -0.05 -17.89 16 8 N -0.67 -15.73 5.56 -442.56 -2.46 -18.19 16 9 C 0.12 3.55 5.91 44.99 0.27 3.82 16 10 H 0.11 4.02 7.43 -2.38 -0.02 4.00 16 11 C -0.19 -6.74 7.34 -8.70 -0.06 -6.80 16 12 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 13 C 0.18 8.95 5.89 87.72 0.52 9.47 16 14 N -0.62 -31.41 3.39 -681.43 -2.31 -33.72 16 15 C -0.24 -13.14 10.38 84.03 0.87 -12.27 16 16 H 0.09 4.46 7.84 -2.91 -0.02 4.44 16 17 C -0.06 -3.61 5.44 84.86 0.46 -3.15 16 18 N -0.95 -56.56 10.57 21.65 0.23 -56.33 16 19 Si 0.98 44.95 29.56 68.60 2.03 46.98 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 21 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 C 0.15 5.92 7.04 86.54 0.61 6.53 16 24 C -0.16 -5.07 6.98 -9.89 -0.07 -5.14 16 25 H 0.14 3.46 8.14 -2.39 -0.02 3.44 16 26 C -0.12 -1.63 9.75 30.59 0.30 -1.33 16 27 C -0.11 -1.69 9.93 30.59 0.30 -1.39 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.41 8.42 7.89 -92.71 -0.73 7.69 16 32 H 0.42 7.59 8.83 -92.71 -0.82 6.78 16 33 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.07 3.77 6.13 -2.38 -0.01 3.76 16 35 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.12 1.72 7.67 -2.38 -0.02 1.70 16 40 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -71.65 347.66 -0.22 -71.87 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.49 Total: 24.49 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 5.62 Total: 15.80 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -7.28 Total: -125.78 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.10 Total: -33.36 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.65 -0.22 -71.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114971049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.232 kcal (2) G-P(sol) polarization free energy of solvation -71.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds