Wall clock time and date at job start Tue Mar 31 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99809 * 2 1 4 4 H 1.48502 * 109.46841 * 269.99927 * 3 2 1 5 5 H 1.48499 * 109.46932 * 30.00265 * 3 2 1 6 6 H 1.48498 * 109.46975 * 149.99796 * 3 2 1 7 7 C 1.37877 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00359 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99581 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46825 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99910 * 170.00184 * 10 9 7 12 12 C 1.53242 * 109.34261 * 187.25233 * 11 10 9 13 13 N 1.47074 * 108.51971 * 306.17121 * 12 11 10 14 14 C 1.34779 * 120.88181 * 231.18016 * 13 12 11 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00168 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47379 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47379 * 180.02562 * 17 16 14 19 19 C 1.35350 * 126.90867 * 84.99697 * 18 17 16 20 20 N 1.33771 * 106.49501 * 179.97438 * 19 18 17 21 21 N 1.28634 * 108.88748 * 0.02562 * 20 19 18 22 22 N 1.28719 * 110.17554 * 359.97438 * 21 20 19 23 23 H 0.97006 * 125.86606 * 179.97438 * 22 21 20 24 24 C 1.47083 * 118.24050 * 51.45714 * 13 12 11 25 25 C 1.46896 * 110.99894 * 294.30054 * 10 9 7 26 26 H 0.97004 * 120.00268 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47108 * 59.99999 * 9 7 2 28 28 H 1.09002 * 109.47169 * 300.00142 * 9 7 2 29 29 H 1.09005 * 109.49660 * 67.29265 * 11 10 9 30 30 H 1.09007 * 109.49614 * 307.20995 * 11 10 9 31 31 H 1.08997 * 109.63265 * 186.45410 * 12 11 10 32 32 H 1.09000 * 109.62608 * 65.87612 * 12 11 10 33 33 H 1.09001 * 109.47007 * 60.00065 * 16 14 13 34 34 H 1.09008 * 109.47301 * 300.00722 * 16 14 13 35 35 H 1.08997 * 109.46859 * 60.00047 * 17 16 14 36 36 H 1.09003 * 109.46756 * 300.00279 * 17 16 14 37 37 H 1.07999 * 126.75574 * 359.97438 * 19 18 17 38 38 H 1.08998 * 109.63298 * 68.24562 * 24 13 12 39 39 H 1.09000 * 109.63181 * 188.83545 * 24 13 12 40 40 H 1.08997 * 109.49490 * 292.70799 * 25 10 9 41 41 H 1.08995 * 109.49483 * 52.79035 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5213 -4.8934 0.2386 12 6 2.5639 -6.0032 0.4114 13 7 3.4617 -5.9862 -0.7534 14 6 3.7121 -7.1123 -1.4503 15 8 3.1940 -8.1578 -1.1197 16 6 4.6349 -7.0720 -2.6410 17 6 4.7462 -8.4722 -3.2476 18 6 5.6695 -8.4321 -4.4379 19 6 7.0193 -8.5300 -4.4233 20 7 7.4202 -8.4457 -5.6967 21 7 6.3870 -8.3044 -6.4499 22 7 5.3158 -8.2912 -5.7364 23 1 4.4106 -8.1960 -6.0718 24 6 4.0839 -4.7089 -1.1339 25 6 2.9768 -3.6490 -1.2494 26 1 -0.4851 0.8401 0.0004 27 1 0.6248 -2.5570 -0.8896 28 1 0.6240 -2.5566 0.8903 29 1 0.8797 -5.1263 -0.6112 30 1 0.9161 -4.8191 1.1422 31 1 2.0633 -6.9694 0.4739 32 1 3.1395 -5.8264 1.3200 33 1 5.6215 -6.7332 -2.3248 34 1 4.2362 -6.3840 -3.3866 35 1 3.7595 -8.8106 -3.5639 36 1 5.1447 -9.1605 -2.5021 37 1 7.6490 -8.6522 -3.5544 38 1 4.8028 -4.4101 -0.3710 39 1 4.5887 -4.8190 -2.0937 40 1 2.3149 -3.8992 -2.0785 41 1 3.4272 -2.6721 -1.4250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119049894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:59 Heat of formation + Delta-G solvation = 61.831646 kcal Electronic energy + Delta-G solvation = -23081.642285 eV Core-core repulsion = 19612.608474 eV Total energy + Delta-G solvation = -3469.033810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.61389 -40.16305 -37.72350 -34.80221 -34.51915 -33.47497 -32.51507 -31.16997 -30.06910 -28.32793 -26.06052 -24.85196 -23.36296 -23.24429 -22.24915 -21.77277 -20.55666 -18.74798 -18.57977 -17.16350 -16.50275 -16.41037 -15.97717 -15.73499 -14.89053 -14.73180 -14.55298 -14.40784 -14.20502 -13.82571 -13.63170 -13.43388 -12.79771 -12.73029 -12.26365 -12.05968 -11.98288 -11.67337 -11.37629 -11.17805 -11.12958 -11.04900 -10.89898 -10.84363 -10.70407 -10.61473 -9.99225 -9.85577 -9.45730 -9.35417 -8.61537 -8.52134 -7.43017 -6.13032 -4.15586 1.20624 2.23487 2.40210 2.54626 2.99002 3.24482 3.31723 3.35009 4.02331 4.29451 4.32699 4.51081 4.56733 4.66953 4.72804 4.90164 5.08390 5.11392 5.20428 5.24283 5.29577 5.42071 5.54349 5.56911 5.58968 5.66768 5.77088 5.81169 5.92772 6.18349 6.33662 6.35761 6.48560 6.55458 7.13001 7.18634 7.41311 7.66379 7.92708 8.03185 8.09705 8.12779 8.38765 8.91554 9.49438 10.97706 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.003045 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.705452 B = 9192.261543 C =10158.821965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.117 3.883 13 N -0.606 5.606 14 C 0.514 3.486 15 O -0.552 6.552 16 C -0.137 4.137 17 C -0.032 4.032 18 C -0.006 4.006 19 C -0.046 4.046 20 N -0.266 5.266 21 N -0.083 5.083 22 N -0.389 5.389 23 H 0.448 0.552 24 C 0.107 3.893 25 C 0.050 3.950 26 H 0.262 0.738 27 H -0.009 1.009 28 H 0.032 0.968 29 H 0.026 0.974 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.192 0.808 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.024 0.976 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 -15.242 -5.952 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.339 5.339 14 C 0.302 3.698 15 O -0.431 6.431 16 C -0.178 4.178 17 C -0.072 4.072 18 C -0.140 4.140 19 C -0.203 4.203 20 N -0.133 5.133 21 N -0.064 5.064 22 N -0.110 5.110 23 H 0.294 0.706 24 C -0.016 4.016 25 C -0.079 4.079 26 H 0.072 0.928 27 H 0.009 0.991 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.209 0.791 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.043 0.957 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.350 -15.511 -6.785 19.340 hybrid contribution -1.309 1.065 0.207 1.700 sum 8.040 -14.446 -6.579 17.794 Atomic orbital electron populations 1.69953 1.06123 1.26952 1.50618 1.24999 0.94865 0.99405 0.95278 0.86495 0.79835 0.83016 0.78069 1.20711 1.21208 1.19689 1.21125 0.93456 0.89841 1.50580 0.91782 1.19728 0.89971 0.87143 0.96243 1.62078 1.28145 1.02752 1.33115 1.22410 0.94949 0.90533 1.00967 1.21775 0.91728 0.99513 0.87487 1.48253 1.46606 1.08659 1.30356 1.20443 0.81994 0.83334 0.84014 1.90684 1.52578 1.30116 1.69743 1.21689 1.01096 0.98262 0.96723 1.19885 0.98065 0.97388 0.91870 1.22354 0.96731 1.07882 0.87007 1.23464 0.92463 1.07611 0.96793 1.75114 1.20854 1.15553 1.01823 1.78313 0.88160 1.19618 1.20265 1.45172 1.11305 1.48965 1.05559 0.70635 1.22155 0.96258 0.82596 1.00559 1.22414 0.95039 0.99074 0.91419 0.92804 0.99145 0.94979 0.95597 0.89996 0.89351 0.90827 0.88034 0.88808 0.89486 0.87739 0.79133 0.90313 0.90188 0.95743 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.51 -13.51 8.41 -34.44 -0.29 -13.80 16 8 H 0.06 1.65 7.13 -52.49 -0.37 1.28 16 9 C 0.19 4.75 4.72 -4.97 -0.02 4.73 16 10 N -0.54 -10.50 4.62 -235.46 -1.09 -11.59 16 11 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 12 C 0.12 1.66 6.60 -3.60 -0.02 1.64 16 13 N -0.61 -7.91 3.00 -172.18 -0.52 -8.43 16 14 C 0.51 6.18 7.71 -10.99 -0.08 6.10 16 15 O -0.55 -8.24 15.43 5.56 0.09 -8.15 16 16 C -0.14 -1.08 4.05 -27.88 -0.11 -1.19 16 17 C -0.03 -0.22 5.07 -27.88 -0.14 -0.36 16 18 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 19 C -0.05 -0.40 11.99 -17.74 -0.21 -0.62 16 20 N -0.27 -3.14 12.41 30.23 0.38 -2.76 16 21 N -0.08 -0.92 13.38 60.35 0.81 -0.11 16 22 N -0.39 -2.98 6.98 33.54 0.23 -2.74 16 23 H 0.45 1.93 8.96 -190.39 -1.71 0.22 16 24 C 0.11 1.33 6.53 -3.36 -0.02 1.31 16 25 C 0.05 0.83 5.47 -3.46 -0.02 0.81 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 28 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.34 7.99 -51.93 -0.41 0.93 16 31 H 0.09 1.24 7.06 -51.93 -0.37 0.87 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 0.66 7.99 -51.93 -0.41 0.25 16 34 H 0.09 0.67 7.67 -51.92 -0.40 0.27 16 35 H 0.09 0.61 8.10 -51.93 -0.42 0.18 16 36 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 0.75 6.02 -51.93 -0.31 0.43 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 1.76 6.67 -51.93 -0.35 1.41 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -33.13 338.87 -8.13 -41.25 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -7.26 Total: -3.34 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.59 Total: 0.12 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.55 Total: -50.67 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.13 -8.13 -41.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119049894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.084 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds