Wall clock time and date at job start Tue Mar 31 2020 03:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99809 * 2 1 4 4 H 1.48502 * 109.46841 * 269.99927 * 3 2 1 5 5 H 1.48499 * 109.46932 * 30.00265 * 3 2 1 6 6 H 1.48498 * 109.46975 * 149.99796 * 3 2 1 7 7 C 1.37877 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00359 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99581 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46825 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99910 * 170.00184 * 10 9 7 12 12 C 1.53242 * 109.34261 * 187.25233 * 11 10 9 13 13 N 1.47074 * 108.51971 * 306.17121 * 12 11 10 14 14 C 1.34779 * 120.88181 * 231.18016 * 13 12 11 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00168 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47379 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47379 * 180.02562 * 17 16 14 19 19 C 1.35350 * 126.90867 * 84.99697 * 18 17 16 20 20 N 1.33771 * 106.49501 * 179.97438 * 19 18 17 21 21 N 1.28634 * 108.88748 * 0.02562 * 20 19 18 22 22 N 1.28719 * 110.17554 * 359.97438 * 21 20 19 23 23 H 0.97006 * 125.86606 * 179.97438 * 22 21 20 24 24 C 1.47083 * 118.24050 * 51.45714 * 13 12 11 25 25 C 1.46896 * 110.99894 * 294.30054 * 10 9 7 26 26 H 0.97004 * 120.00268 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47108 * 59.99999 * 9 7 2 28 28 H 1.09002 * 109.47169 * 300.00142 * 9 7 2 29 29 H 1.09005 * 109.49660 * 67.29265 * 11 10 9 30 30 H 1.09007 * 109.49614 * 307.20995 * 11 10 9 31 31 H 1.08997 * 109.63265 * 186.45410 * 12 11 10 32 32 H 1.09000 * 109.62608 * 65.87612 * 12 11 10 33 33 H 1.09001 * 109.47007 * 60.00065 * 16 14 13 34 34 H 1.09008 * 109.47301 * 300.00722 * 16 14 13 35 35 H 1.08997 * 109.46859 * 60.00047 * 17 16 14 36 36 H 1.09003 * 109.46756 * 300.00279 * 17 16 14 37 37 H 1.07999 * 126.75574 * 359.97438 * 19 18 17 38 38 H 1.08998 * 109.63298 * 68.24562 * 24 13 12 39 39 H 1.09000 * 109.63181 * 188.83545 * 24 13 12 40 40 H 1.08997 * 109.49490 * 292.70799 * 25 10 9 41 41 H 1.08995 * 109.49483 * 52.79035 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5213 -4.8934 0.2386 12 6 2.5639 -6.0032 0.4114 13 7 3.4617 -5.9862 -0.7534 14 6 3.7121 -7.1123 -1.4503 15 8 3.1940 -8.1578 -1.1197 16 6 4.6349 -7.0720 -2.6410 17 6 4.7462 -8.4722 -3.2476 18 6 5.6695 -8.4321 -4.4379 19 6 7.0193 -8.5300 -4.4233 20 7 7.4202 -8.4457 -5.6967 21 7 6.3870 -8.3044 -6.4499 22 7 5.3158 -8.2912 -5.7364 23 1 4.4106 -8.1960 -6.0718 24 6 4.0839 -4.7089 -1.1339 25 6 2.9768 -3.6490 -1.2494 26 1 -0.4851 0.8401 0.0004 27 1 0.6248 -2.5570 -0.8896 28 1 0.6240 -2.5566 0.8903 29 1 0.8797 -5.1263 -0.6112 30 1 0.9161 -4.8191 1.1422 31 1 2.0633 -6.9694 0.4739 32 1 3.1395 -5.8264 1.3200 33 1 5.6215 -6.7332 -2.3248 34 1 4.2362 -6.3840 -3.3866 35 1 3.7595 -8.8106 -3.5639 36 1 5.1447 -9.1605 -2.5021 37 1 7.6490 -8.6522 -3.5544 38 1 4.8028 -4.4101 -0.3710 39 1 4.5887 -4.8190 -2.0937 40 1 2.3149 -3.8992 -2.0785 41 1 3.4272 -2.6721 -1.4250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119049894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:58 Heat of formation + Delta-G solvation = 37.016628 kcal Electronic energy + Delta-G solvation = -23082.718344 eV Core-core repulsion = 19612.608474 eV Total energy + Delta-G solvation = -3470.109870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.27756 -41.20709 -39.02583 -35.96420 -35.49293 -34.40818 -34.12795 -32.32317 -30.90728 -29.90486 -27.46638 -25.89183 -24.59352 -23.98257 -23.71305 -22.65490 -21.78727 -19.78422 -19.26041 -18.49455 -18.13742 -17.21430 -16.83693 -16.69304 -16.64995 -16.00228 -15.60044 -15.36738 -15.34463 -15.15961 -14.76559 -14.34857 -14.15849 -13.88571 -13.55091 -13.23973 -13.00275 -12.74883 -12.73106 -12.59467 -12.39039 -12.30732 -12.26068 -12.11115 -11.78337 -11.75903 -11.58048 -11.28050 -10.85405 -10.62452 -10.13803 -9.74174 -9.05546 -8.20843 -6.31248 0.56952 1.43365 1.44787 1.54896 1.56034 1.62261 1.84869 2.04628 2.40791 3.12107 3.22977 3.32793 3.66902 3.85289 3.90685 4.03026 4.05284 4.13086 4.24586 4.28471 4.33054 4.45550 4.47357 4.55468 4.66346 4.76030 4.87302 4.95569 5.01456 5.03795 5.05873 5.20007 5.23037 5.24133 5.46238 5.63695 5.98360 6.02223 6.23687 6.46372 6.56683 6.85262 7.13912 7.39179 7.44710 8.90447 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.003045 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.705452 B = 9192.261543 C =10158.821965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.521 4.521 8 H 0.071 0.929 9 C 0.209 3.791 10 N -0.540 5.540 11 C 0.043 3.957 12 C 0.127 3.873 13 N -0.613 5.613 14 C 0.515 3.485 15 O -0.582 6.582 16 C -0.131 4.131 17 C -0.023 4.023 18 C 0.008 3.992 19 C -0.051 4.051 20 N -0.304 5.304 21 N -0.114 5.114 22 N -0.376 5.376 23 H 0.461 0.539 24 C 0.120 3.880 25 C 0.047 3.953 26 H 0.264 0.736 27 H -0.042 1.042 28 H 0.003 0.997 29 H 0.014 0.986 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.216 0.784 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.016 0.984 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 -15.517 -6.175 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.559 4.559 8 H 0.089 0.911 9 C 0.082 3.918 10 N -0.265 5.265 11 C -0.086 4.086 12 C 0.004 3.996 13 N -0.345 5.345 14 C 0.305 3.695 15 O -0.462 6.462 16 C -0.171 4.171 17 C -0.062 4.062 18 C -0.127 4.127 19 C -0.209 4.209 20 N -0.170 5.170 21 N -0.093 5.093 22 N -0.099 5.099 23 H 0.309 0.691 24 C -0.002 4.002 25 C -0.082 4.082 26 H 0.072 0.928 27 H -0.024 1.024 28 H 0.021 0.979 29 H 0.033 0.967 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.233 0.767 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.034 0.966 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.438 -15.806 -7.043 20.743 hybrid contribution -2.033 1.076 0.304 2.320 sum 9.405 -14.730 -6.739 18.731 Atomic orbital electron populations 1.70094 1.07908 1.27913 1.51860 1.25935 0.95665 1.03324 0.94831 0.85375 0.78659 0.78154 0.78403 1.19810 1.21279 1.18475 1.21465 0.93866 0.90667 1.49886 0.91123 1.19364 0.90098 0.89006 0.93302 1.62004 1.27008 1.02521 1.34961 1.22441 0.95759 0.90152 1.00284 1.21574 0.91346 0.98095 0.88581 1.48335 1.46590 1.09386 1.30200 1.21111 0.81754 0.82286 0.84334 1.90680 1.53817 1.31128 1.70618 1.21725 1.01139 0.99173 0.95025 1.19814 0.97942 0.97033 0.91460 1.22388 0.96399 1.06964 0.86933 1.23975 0.93328 1.06992 0.96621 1.75082 1.21739 1.16888 1.03251 1.78267 0.88885 1.21192 1.20977 1.45217 1.11497 1.47649 1.05571 0.69065 1.22121 0.94347 0.80694 1.03043 1.22489 0.95742 1.00289 0.89688 0.92760 1.02396 0.97896 0.96724 0.90416 0.89082 0.90117 0.85654 0.87404 0.89384 0.87325 0.76734 0.89528 0.86173 0.96615 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.07 13.29 21.45 0.28 -54.78 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.52 -27.81 8.41 25.60 0.22 -27.59 16 8 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 9 C 0.21 10.60 4.72 85.56 0.40 11.01 16 10 N -0.54 -21.33 4.62 -898.86 -4.15 -25.49 16 11 C 0.04 1.44 5.62 86.38 0.49 1.93 16 12 C 0.13 3.43 6.60 86.35 0.57 4.00 16 13 N -0.61 -14.42 3.00 -817.03 -2.45 -16.87 16 14 C 0.51 10.83 7.71 87.66 0.68 11.50 16 15 O -0.58 -16.04 15.43 -3.04 -0.05 -16.08 16 16 C -0.13 -1.51 4.05 29.85 0.12 -1.39 16 17 C -0.02 -0.24 5.07 29.85 0.15 -0.09 16 18 C 0.01 0.10 6.56 41.36 0.27 0.37 16 19 C -0.05 -0.77 11.99 83.73 1.00 0.24 16 20 N -0.30 -6.74 12.41 -58.26 -0.72 -7.46 16 21 N -0.11 -2.37 13.38 37.02 0.50 -1.87 16 22 N -0.38 -4.97 6.98 -47.79 -0.33 -5.30 16 23 H 0.46 3.00 8.96 -219.95 -1.97 1.03 16 24 C 0.12 2.61 6.53 86.51 0.57 3.18 16 25 C 0.05 1.52 5.47 86.54 0.47 2.00 16 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 27 H -0.04 -2.34 8.12 -2.39 -0.02 -2.36 16 28 H 0.00 0.16 7.97 -2.39 -0.02 0.14 16 29 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.08 2.63 7.99 -2.38 -0.02 2.62 16 31 H 0.09 2.45 7.06 -2.39 -0.02 2.43 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.13 0.96 7.99 -2.39 -0.02 0.94 16 34 H 0.11 1.04 7.67 -2.38 -0.02 1.02 16 35 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.11 1.14 8.10 -2.39 -0.02 1.12 16 37 H 0.22 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.12 1.68 6.02 -2.39 -0.01 1.66 16 40 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.08 2.97 6.67 -2.39 -0.02 2.95 16 Total: -1.00 -73.48 338.87 -0.43 -73.90 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -0.92 Total: 4.02 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.40 Total: 5.64 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -6.88 Total: -111.78 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.05 Total: -16.08 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -73.48 -0.43 -73.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119049894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.922 kcal (2) G-P(sol) polarization free energy of solvation -73.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds