Wall clock time and date at job start Tue Mar 31 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47117 * 2 1 4 4 C 1.42896 * 114.00046 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47087 * 180.02562 * 4 3 2 6 6 N 1.31794 * 119.08252 * 90.00705 * 5 4 3 7 7 C 1.32543 * 121.01091 * 179.72231 * 6 5 4 8 8 C 1.50703 * 120.39978 * 179.97438 * 7 6 5 9 9 C 1.38117 * 119.20217 * 359.97438 * 7 6 5 10 10 C 1.39628 * 118.33224 * 0.02562 * 9 7 6 11 11 N 1.38537 * 120.53175 * 180.02562 * 10 9 7 12 12 C 1.47481 * 111.00209 * 84.03066 * 11 10 9 13 13 C 1.53515 * 87.93315 * 138.70465 * 12 11 10 14 14 O 1.42897 * 114.17002 * 87.62330 * 13 12 11 15 15 C 1.50703 * 114.16539 * 220.33283 * 13 12 11 16 16 H 1.07991 * 119.99976 * 93.84337 * 15 13 12 17 17 C 1.37878 * 119.99486 * 273.83722 * 15 13 12 18 18 N 1.31514 * 120.00287 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99787 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47085 * 59.99802 * 19 17 15 21 21 H 1.48501 * 109.47138 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47186 * 300.00246 * 19 17 15 23 23 C 1.47482 * 110.99959 * 180.02562 * 11 10 9 24 24 N 1.31750 * 119.08877 * 269.73271 * 5 4 3 25 25 H 1.09003 * 109.47011 * 59.99990 * 1 2 3 26 26 H 1.08997 * 109.46801 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47128 * 299.99953 * 1 2 3 28 28 H 1.09001 * 109.47009 * 240.00614 * 2 1 3 29 29 H 1.08998 * 109.47046 * 120.00478 * 2 1 3 30 30 H 1.09006 * 109.46634 * 60.00386 * 4 3 2 31 31 H 1.09002 * 109.47604 * 300.00458 * 4 3 2 32 32 H 1.08994 * 109.47189 * 89.99487 * 8 7 6 33 33 H 1.09001 * 109.47137 * 209.99835 * 8 7 6 34 34 H 1.08997 * 109.46738 * 329.99093 * 8 7 6 35 35 H 1.08000 * 120.83682 * 179.97438 * 9 7 6 36 36 H 1.09003 * 113.47340 * 253.47079 * 12 11 10 37 37 H 1.08993 * 113.47347 * 23.93194 * 12 11 10 38 38 H 0.96699 * 114.00027 * 86.16104 * 14 13 12 39 39 H 0.96998 * 119.99858 * 180.02562 * 18 17 15 40 40 H 1.09000 * 113.47504 * 336.05687 * 23 11 10 41 41 H 1.09003 * 113.47975 * 106.53013 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9162 0.0012 6 7 3.9843 3.5347 1.1532 7 6 4.3311 4.8132 1.1983 8 6 4.5154 5.5071 2.5233 9 6 4.5217 5.5018 0.0163 10 6 4.3389 4.8168 -1.1866 11 7 4.5185 5.4630 -2.3988 12 6 5.9411 5.4708 -2.7879 13 6 5.4925 5.1658 -4.2240 14 8 5.1952 6.3263 -5.0030 15 6 6.3639 4.1691 -4.9440 16 1 6.1040 3.1209 -4.9377 17 6 7.4928 4.5956 -5.6109 18 7 7.8094 5.8720 -5.6182 19 14 8.5725 3.3603 -6.5040 20 1 7.7756 2.6723 -7.5512 21 1 9.7148 4.0675 -7.1367 22 1 9.0853 2.3590 -5.5346 23 6 4.2719 4.5467 -3.5278 24 7 3.9902 3.5340 -1.1499 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8339 0.9765 -0.8893 31 1 3.8334 0.9767 0.8908 32 1 5.5515 5.4051 2.8459 33 1 4.2701 6.5638 2.4173 34 1 3.8576 5.0542 3.2651 35 1 4.8042 6.5442 0.0223 36 1 6.4157 6.4460 -2.6791 37 1 6.5198 4.6666 -2.3337 38 1 5.9654 6.7143 -5.4404 39 1 8.6034 6.1720 -6.0877 40 1 4.4052 3.4957 -3.2711 41 1 3.3324 4.7389 -4.0459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120037151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:03 Heat of formation + Delta-G solvation = -22.638665 kcal Electronic energy + Delta-G solvation = -23587.384798 eV Core-core repulsion = 20082.395329 eV Total energy + Delta-G solvation = -3504.989469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.67781 -40.82260 -38.99669 -36.70979 -35.26345 -34.17828 -33.73754 -32.12128 -30.17659 -29.08401 -28.40239 -26.86532 -26.52427 -23.71170 -23.21702 -22.80322 -20.74856 -19.55454 -18.82254 -17.94545 -17.67149 -17.14925 -16.88102 -16.59552 -16.49161 -16.29094 -15.94402 -15.46987 -14.87578 -14.58608 -14.26120 -14.09075 -13.97336 -13.81380 -13.46794 -13.31749 -13.24617 -13.16118 -12.82928 -12.66370 -12.35889 -12.28494 -12.27382 -12.20135 -12.03565 -11.44750 -11.32696 -10.79481 -10.70803 -10.68184 -10.47167 -10.24805 -9.80876 -8.30971 -6.48492 -0.28231 -0.05234 1.42764 1.44422 1.52745 2.20900 2.34332 2.49427 2.79833 2.90930 3.02213 3.25330 3.58986 3.89737 3.98475 4.06535 4.10428 4.14256 4.15238 4.24749 4.32924 4.34759 4.42056 4.49287 4.56332 4.70869 4.73327 4.80841 4.83132 4.89310 4.97491 5.01723 5.02479 5.24194 5.29037 5.37429 5.68837 5.89009 5.97948 6.08186 6.12621 6.56313 7.00376 7.24627 7.48821 8.75018 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.004373 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.143422 B = 6400.794897 C = 7490.628444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.408 6.408 4 C 0.141 3.859 5 C 0.323 3.677 6 N -0.531 5.531 7 C 0.180 3.820 8 C -0.097 4.097 9 C -0.225 4.225 10 C 0.307 3.693 11 N -0.432 5.432 12 C 0.014 3.986 13 C 0.230 3.770 14 O -0.579 6.579 15 C -0.559 4.559 16 H 0.065 0.935 17 C 0.032 3.968 18 N -0.916 5.916 19 Si 0.970 3.030 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.271 1.271 23 C 0.026 3.974 24 N -0.559 5.559 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.165 0.835 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.387 0.613 39 H 0.278 0.722 40 H 0.097 0.903 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 -7.161 14.613 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.327 6.327 4 C 0.062 3.938 5 C 0.053 3.947 6 N -0.249 5.249 7 C 0.036 3.964 8 C -0.154 4.154 9 C -0.249 4.249 10 C 0.070 3.930 11 N -0.151 5.151 12 C -0.113 4.113 13 C 0.188 3.812 14 O -0.391 6.391 15 C -0.597 4.597 16 H 0.083 0.917 17 C -0.168 4.168 18 N -0.556 5.556 19 Si 0.794 3.206 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.196 1.196 23 C -0.102 4.102 24 N -0.280 5.280 25 H 0.069 0.931 26 H 0.117 0.883 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.183 0.817 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.243 0.757 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.016 -7.274 14.814 17.933 hybrid contribution 1.749 -0.123 -0.986 2.011 sum -5.267 -7.398 13.827 16.543 Atomic orbital electron populations 1.21769 0.92831 1.03632 1.02363 1.22768 0.96356 0.81823 1.01619 1.87897 1.19645 1.29390 1.95746 1.20937 0.82635 0.86917 1.03261 1.23009 0.91281 0.97281 0.83129 1.68128 1.16328 1.10904 1.29564 1.22307 0.87902 0.88948 0.97281 1.20890 1.04745 1.00410 0.89323 1.22542 1.06898 1.03818 0.91641 1.21280 0.89816 0.87763 0.94156 1.66355 1.15174 1.34770 0.98830 1.24539 0.85935 1.00861 0.99959 1.19645 0.90656 0.84361 0.86532 1.86036 1.40489 1.44944 1.67621 1.21692 1.09010 0.94386 1.34612 0.91664 1.25795 0.98014 0.97477 0.95537 1.69333 1.27653 1.15345 1.43307 0.85429 0.77828 0.78686 0.78652 1.19611 1.20148 1.19589 1.23969 0.99873 0.96896 0.89434 1.68183 1.18211 1.09727 1.31890 0.93097 0.88342 0.92305 0.92281 0.91199 0.90287 0.88473 0.87910 0.88030 0.89148 0.81749 0.90563 0.92202 0.75728 0.91227 0.88486 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.05 0.98 6.66 71.98 0.48 1.46 16 3 O -0.41 -11.78 10.33 -148.98 -1.54 -13.32 16 4 C 0.14 3.93 6.37 71.24 0.45 4.38 16 5 C 0.32 11.30 7.27 138.76 1.01 12.31 16 6 N -0.53 -17.11 10.27 -176.28 -1.81 -18.92 16 7 C 0.18 5.16 6.81 42.42 0.29 5.45 16 8 C -0.10 -1.69 10.21 71.24 0.73 -0.96 16 9 C -0.23 -7.41 9.78 22.58 0.22 -7.19 16 10 C 0.31 12.42 5.86 133.17 0.78 13.20 16 11 N -0.43 -19.36 6.43 -731.12 -4.70 -24.06 16 12 C 0.01 0.66 7.07 83.61 0.59 1.25 16 13 C 0.23 11.90 1.57 -11.18 -0.02 11.88 16 14 O -0.58 -31.68 13.54 -148.98 -2.02 -33.70 16 15 C -0.56 -30.02 8.69 25.60 0.22 -29.80 16 16 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 17 C 0.03 1.67 5.40 84.65 0.46 2.12 16 18 N -0.92 -48.13 11.02 21.45 0.24 -47.90 16 19 Si 0.97 40.95 29.54 68.60 2.03 42.98 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 C 0.03 1.26 6.81 83.63 0.57 1.83 16 24 N -0.56 -22.48 8.26 -185.44 -1.53 -24.01 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.16 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.06 2.85 7.85 -2.39 -0.02 2.83 16 38 H 0.39 21.37 6.34 -74.06 -0.47 20.90 16 39 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 40 H 0.10 4.60 6.65 -2.39 -0.02 4.58 16 41 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -64.35 346.14 -2.24 -66.59 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.57 Total: 38.17 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.52 Total: 14.16 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -7.80 Total: -114.88 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -3.56 Total: -47.01 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -64.35 -2.24 -66.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120037151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.953 kcal (2) G-P(sol) polarization free energy of solvation -64.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds