Wall clock time and date at job start Tue Mar 31 2020 03:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99738 * 2 1 4 4 H 1.48508 * 109.46741 * 269.99648 * 3 2 1 5 5 H 1.48494 * 109.47224 * 29.99663 * 3 2 1 6 6 H 1.48498 * 109.47122 * 150.00147 * 3 2 1 7 7 C 1.38807 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00435 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00016 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46974 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46974 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99914 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99737 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99873 * 179.97438 * 13 12 11 16 16 H 1.09000 * 107.84628 * 63.47069 * 15 13 12 17 17 C 1.50953 * 108.02953 * 306.93333 * 15 13 12 18 18 C 1.53674 * 110.95474 * 165.71925 * 17 15 13 19 19 C 1.51873 * 106.89690 * 79.08344 * 18 17 15 20 20 N 1.29905 * 127.80039 * 114.81712 * 19 18 17 21 21 N 1.29032 * 109.22222 * 180.29153 * 20 19 18 22 22 C 1.30968 * 109.71168 * 359.91975 * 21 20 19 23 23 N 1.34500 * 106.82000 * 359.83757 * 22 21 20 24 24 C 1.47505 * 128.41341 * 180.28917 * 23 22 21 25 25 C 1.50860 * 108.02525 * 180.02562 * 15 13 12 26 26 H 0.96997 * 120.00311 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00187 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47015 * 59.99590 * 10 9 7 29 29 H 1.08992 * 109.46874 * 299.99167 * 10 9 7 30 30 H 1.08999 * 109.47195 * 59.99558 * 11 10 9 31 31 H 1.09004 * 109.47316 * 300.00010 * 11 10 9 32 32 H 0.97000 * 119.99797 * 359.97438 * 12 11 10 33 33 H 1.09001 * 109.18519 * 286.10281 * 17 15 13 34 34 H 1.09009 * 109.17961 * 45.34267 * 17 15 13 35 35 H 1.09000 * 109.96947 * 198.43359 * 18 17 15 36 36 H 1.09004 * 109.96708 * 319.64522 * 18 17 15 37 37 H 1.08007 * 126.61343 * 179.89185 * 22 21 20 38 38 H 1.09002 * 109.93430 * 126.46350 * 24 23 22 39 39 H 1.09000 * 109.92984 * 5.33154 * 24 23 22 40 40 H 1.08999 * 109.15068 * 74.02158 * 25 15 13 41 41 H 1.09000 * 109.10207 * 314.83917 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 7 1.7966 -6.0884 0.0006 13 6 1.1227 -7.2557 0.0015 14 8 -0.0901 -7.2556 0.0024 15 6 1.8763 -8.5607 0.0003 16 1 2.4460 -8.6183 0.9277 17 6 2.8551 -8.5339 -1.1486 18 6 3.8947 -9.6573 -1.0111 19 6 3.2258 -10.9375 -1.4806 20 7 3.5308 -11.6622 -2.5146 21 7 2.7257 -12.6684 -2.5806 22 6 1.8764 -12.6206 -1.5848 23 7 2.1805 -11.5250 -0.8662 24 6 1.5293 -11.0221 0.3581 25 6 0.8674 -9.6823 0.0011 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 2.6849 -3.7144 0.8905 29 1 2.6847 -3.7145 -0.8895 30 1 0.4370 -4.7621 -0.8885 31 1 0.4377 -4.7618 0.8914 32 1 2.7666 -6.0883 -0.0005 33 1 2.3119 -8.6612 -2.0850 34 1 3.3671 -7.5717 -1.1604 35 1 4.7620 -9.4402 -1.6346 36 1 4.2007 -9.7559 0.0304 37 1 1.0844 -13.3256 -1.3792 38 1 2.2736 -10.8724 1.1402 39 1 0.7738 -11.7317 0.6954 40 1 0.4164 -9.7583 -0.9883 41 1 0.0897 -9.4620 0.7324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131503903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:10 Heat of formation + Delta-G solvation = 50.027412 kcal Electronic energy + Delta-G solvation = -22935.490335 eV Core-core repulsion = 19465.944655 eV Total energy + Delta-G solvation = -3469.545680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.59792 -40.32077 -37.34301 -35.80161 -34.76710 -33.87361 -32.46076 -31.30689 -30.22817 -28.27120 -26.91480 -24.74349 -23.74765 -22.76148 -22.10610 -21.54433 -20.61992 -20.04694 -17.97552 -17.61693 -17.15693 -16.33335 -15.94203 -15.61388 -15.38390 -15.14992 -14.73194 -14.55499 -14.30530 -14.00331 -13.37847 -13.25053 -13.18171 -12.98306 -12.82079 -12.51485 -12.14124 -11.76583 -11.52047 -11.45689 -11.29185 -11.16652 -10.88178 -10.85111 -10.63504 -10.50728 -10.17085 -9.95038 -9.75795 -9.47176 -9.07853 -8.92177 -7.05295 -5.84586 -3.15765 1.55767 2.13460 2.50272 2.62306 3.03002 3.39035 3.43964 3.45926 3.76856 3.97853 4.08170 4.13334 4.32275 4.37408 4.52873 4.55507 4.60249 4.78714 4.92281 4.95919 4.99272 5.27770 5.37060 5.43256 5.44558 5.46087 5.63164 5.64525 5.68658 5.70355 5.87012 5.88076 6.06235 6.37299 6.52018 6.61910 6.63619 7.44868 7.60979 8.14060 8.32862 8.45548 9.44235 9.98306 10.32739 11.37924 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.038734 B = 0.002449 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.708058 B =11430.216829 C =11867.862814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.721 5.721 13 C 0.511 3.489 14 O -0.540 6.540 15 C -0.108 4.108 16 H 0.099 0.901 17 C -0.116 4.116 18 C -0.030 4.030 19 C 0.175 3.825 20 N -0.294 5.294 21 N -0.305 5.305 22 C 0.149 3.851 23 N -0.470 5.470 24 C 0.106 3.894 25 C -0.120 4.120 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.218 0.782 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 -24.734 3.280 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.372 5.372 13 C 0.296 3.704 14 O -0.417 6.417 15 C -0.130 4.130 16 H 0.117 0.883 17 C -0.154 4.154 18 C -0.069 4.069 19 C -0.093 4.093 20 N -0.134 5.134 21 N -0.144 5.144 22 C -0.138 4.138 23 N -0.161 5.161 24 C -0.017 4.017 25 C -0.158 4.158 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.234 0.766 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.442 -25.073 2.047 25.739 hybrid contribution -0.236 1.322 1.195 1.798 sum 5.206 -23.751 3.242 24.530 Atomic orbital electron populations 1.69663 1.05178 1.25923 1.57085 1.24788 0.95572 0.97873 1.02564 0.86146 0.78605 0.83538 0.77597 1.21571 1.21662 1.20679 1.19181 0.91033 0.83823 1.43599 0.91009 1.42190 1.06000 0.99567 1.89728 1.20752 0.93462 0.85700 0.98421 1.21610 0.95491 0.81667 1.02619 1.45978 1.10477 1.06072 1.74687 1.20493 0.88160 0.85358 0.76393 1.90725 1.13926 1.87542 1.49486 1.20692 0.97313 0.93530 1.01424 0.88286 1.21407 0.96041 0.99391 0.98594 1.20551 0.97700 0.86131 1.02561 1.24906 0.91164 0.99471 0.93766 1.74246 1.20823 1.01956 1.16371 1.74543 1.04210 1.16353 1.19338 1.26314 1.03303 0.92098 0.92118 1.46365 1.26008 1.20549 1.23139 1.22533 0.98096 0.96887 0.84143 1.21520 0.98031 0.91055 1.05244 0.93313 0.78010 0.95818 0.95784 0.91241 0.91222 0.76568 0.90461 0.89240 0.87282 0.89055 0.76570 0.88307 0.87409 0.90191 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.04 5.60 -59.91 -0.34 -18.38 16 10 C 0.14 2.68 6.37 -4.04 -0.03 2.65 16 11 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16 12 N -0.72 -8.34 5.28 -60.29 -0.32 -8.65 16 13 C 0.51 5.92 7.12 -10.99 -0.08 5.84 16 14 O -0.54 -8.62 15.53 5.56 0.09 -8.53 16 15 C -0.11 -0.74 1.97 -93.87 -0.19 -0.93 16 16 H 0.10 0.43 7.67 -51.93 -0.40 0.04 16 17 C -0.12 -0.75 4.88 -27.41 -0.13 -0.88 16 18 C -0.03 -0.17 6.02 -26.95 -0.16 -0.34 16 19 C 0.18 1.62 7.03 -155.62 -1.09 0.52 16 20 N -0.29 -3.80 12.23 32.87 0.40 -3.40 16 21 N -0.31 -3.84 12.24 29.57 0.36 -3.48 16 22 C 0.15 1.24 12.83 -90.48 -1.16 0.08 16 23 N -0.47 -3.43 2.72 -114.23 -0.31 -3.74 16 24 C 0.11 0.42 6.52 -3.15 -0.02 0.40 16 25 C -0.12 -0.79 4.49 -27.47 -0.12 -0.91 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.39 10.15 7.67 -40.82 -0.31 9.83 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.40 3.41 7.25 -40.82 -0.30 3.11 16 33 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 34 H 0.09 0.48 6.58 -51.92 -0.34 0.14 16 35 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.32 7.89 -51.93 -0.41 -0.09 16 37 H 0.22 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.10 0.23 7.87 -51.93 -0.41 -0.18 16 39 H 0.11 0.19 8.13 -51.93 -0.42 -0.23 16 40 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.10 0.75 7.40 -51.93 -0.38 0.36 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -37.04 337.42 -8.47 -45.50 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.89 Total: 4.95 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.25 Total: 0.88 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: 0.52 Total: -64.82 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.04 -8.47 -45.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131503903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.531 kcal (2) G-P(sol) polarization free energy of solvation -37.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds