Wall clock time and date at job start Tue Mar 31 2020 03:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99738 * 2 1 4 4 H 1.48508 * 109.46741 * 269.99648 * 3 2 1 5 5 H 1.48494 * 109.47224 * 29.99663 * 3 2 1 6 6 H 1.48498 * 109.47122 * 150.00147 * 3 2 1 7 7 C 1.38807 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00435 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00016 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46974 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46974 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99914 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99737 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99873 * 179.97438 * 13 12 11 16 16 H 1.09000 * 107.84628 * 63.47069 * 15 13 12 17 17 C 1.50953 * 108.02953 * 306.93333 * 15 13 12 18 18 C 1.53674 * 110.95474 * 165.71925 * 17 15 13 19 19 C 1.51873 * 106.89690 * 79.08344 * 18 17 15 20 20 N 1.29905 * 127.80039 * 114.81712 * 19 18 17 21 21 N 1.29032 * 109.22222 * 180.29153 * 20 19 18 22 22 C 1.30968 * 109.71168 * 359.91975 * 21 20 19 23 23 N 1.34500 * 106.82000 * 359.83757 * 22 21 20 24 24 C 1.47505 * 128.41341 * 180.28917 * 23 22 21 25 25 C 1.50860 * 108.02525 * 180.02562 * 15 13 12 26 26 H 0.96997 * 120.00311 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00187 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47015 * 59.99590 * 10 9 7 29 29 H 1.08992 * 109.46874 * 299.99167 * 10 9 7 30 30 H 1.08999 * 109.47195 * 59.99558 * 11 10 9 31 31 H 1.09004 * 109.47316 * 300.00010 * 11 10 9 32 32 H 0.97000 * 119.99797 * 359.97438 * 12 11 10 33 33 H 1.09001 * 109.18519 * 286.10281 * 17 15 13 34 34 H 1.09009 * 109.17961 * 45.34267 * 17 15 13 35 35 H 1.09000 * 109.96947 * 198.43359 * 18 17 15 36 36 H 1.09004 * 109.96708 * 319.64522 * 18 17 15 37 37 H 1.08007 * 126.61343 * 179.89185 * 22 21 20 38 38 H 1.09002 * 109.93430 * 126.46350 * 24 23 22 39 39 H 1.09000 * 109.92984 * 5.33154 * 24 23 22 40 40 H 1.08999 * 109.15068 * 74.02158 * 25 15 13 41 41 H 1.09000 * 109.10207 * 314.83917 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 7 1.7966 -6.0884 0.0006 13 6 1.1227 -7.2557 0.0015 14 8 -0.0901 -7.2556 0.0024 15 6 1.8763 -8.5607 0.0003 16 1 2.4460 -8.6183 0.9277 17 6 2.8551 -8.5339 -1.1486 18 6 3.8947 -9.6573 -1.0111 19 6 3.2258 -10.9375 -1.4806 20 7 3.5308 -11.6622 -2.5146 21 7 2.7257 -12.6684 -2.5806 22 6 1.8764 -12.6206 -1.5848 23 7 2.1805 -11.5250 -0.8662 24 6 1.5293 -11.0221 0.3581 25 6 0.8674 -9.6823 0.0011 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 2.6849 -3.7144 0.8905 29 1 2.6847 -3.7145 -0.8895 30 1 0.4370 -4.7621 -0.8885 31 1 0.4377 -4.7618 0.8914 32 1 2.7666 -6.0883 -0.0005 33 1 2.3119 -8.6612 -2.0850 34 1 3.3671 -7.5717 -1.1604 35 1 4.7620 -9.4402 -1.6346 36 1 4.2007 -9.7559 0.0304 37 1 1.0844 -13.3256 -1.3792 38 1 2.2736 -10.8724 1.1402 39 1 0.7738 -11.7317 0.6954 40 1 0.4164 -9.7583 -0.9883 41 1 0.0897 -9.4620 0.7324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131503903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:08 Heat of formation + Delta-G solvation = 23.628862 kcal Electronic energy + Delta-G solvation = -22936.635062 eV Core-core repulsion = 19465.944655 eV Total energy + Delta-G solvation = -3470.690407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -44.23189 -41.23335 -38.08120 -37.24802 -35.66472 -35.13033 -33.23059 -32.95862 -30.92355 -29.60505 -27.78398 -25.62488 -25.20037 -23.41746 -23.25602 -22.71380 -21.17786 -20.89029 -19.34095 -18.56568 -18.18327 -17.09392 -17.01173 -16.60103 -16.49738 -16.02493 -15.80587 -15.50439 -15.35596 -15.11167 -14.82505 -14.63979 -14.17234 -13.71065 -13.35786 -13.16731 -13.07434 -13.03718 -12.67233 -12.62582 -12.52016 -12.40918 -12.08892 -11.95143 -11.88437 -11.85191 -11.31858 -11.09788 -10.99237 -10.83146 -10.20573 -10.11727 -9.06751 -7.97415 -5.28647 0.97383 1.48736 1.50822 1.58815 1.59251 1.65673 1.91195 2.06964 2.57569 3.25602 3.37237 3.43062 3.55497 3.63753 3.82981 3.89824 4.01206 4.07461 4.16226 4.22288 4.26134 4.29119 4.43672 4.45705 4.52115 4.60494 4.77081 4.88757 4.96562 5.05708 5.07726 5.13387 5.14200 5.16510 5.30020 5.39033 5.49427 6.02069 6.23661 6.53478 7.22940 7.29882 7.77463 8.02314 8.24212 9.26307 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.038734 B = 0.002449 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.708058 B =11430.216829 C =11867.862814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.246 4.246 8 H 0.084 0.916 9 N -0.749 5.749 10 C 0.148 3.852 11 C 0.127 3.873 12 N -0.709 5.709 13 C 0.508 3.492 14 O -0.588 6.588 15 C -0.096 4.096 16 H 0.142 0.858 17 C -0.109 4.109 18 C -0.023 4.023 19 C 0.174 3.826 20 N -0.348 5.348 21 N -0.361 5.361 22 C 0.159 3.841 23 N -0.467 5.467 24 C 0.110 3.890 25 C -0.117 4.117 26 H 0.252 0.748 27 H 0.373 0.627 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.418 0.582 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.255 0.745 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.050 0.950 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 -25.700 5.081 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.378 4.378 8 H 0.102 0.898 9 N -0.392 5.392 10 C 0.022 3.978 11 C 0.002 3.998 12 N -0.362 5.362 13 C 0.295 3.705 14 O -0.468 6.468 15 C -0.117 4.117 16 H 0.159 0.841 17 C -0.148 4.148 18 C -0.063 4.063 19 C -0.096 4.096 20 N -0.187 5.187 21 N -0.199 5.199 22 C -0.130 4.130 23 N -0.158 5.158 24 C -0.011 4.011 25 C -0.156 4.156 26 H 0.061 0.939 27 H 0.205 0.795 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.256 0.744 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.271 0.729 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.068 0.932 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.506 -26.086 3.849 27.416 hybrid contribution -0.885 1.547 0.640 1.893 sum 6.622 -24.539 4.488 25.810 Atomic orbital electron populations 1.69831 1.06853 1.26273 1.59255 1.25669 0.96420 1.01494 1.03449 0.85074 0.77780 0.79038 0.77447 1.21419 1.22389 1.18881 1.19651 0.91752 0.84839 1.41531 0.89793 1.42452 1.05756 1.01210 1.89773 1.20869 0.93612 0.84019 0.99347 1.21122 0.94800 0.83007 1.00879 1.45792 1.11277 1.04643 1.74531 1.21406 0.87833 0.86552 0.74662 1.90712 1.16361 1.88252 1.51468 1.20759 0.97092 0.90309 1.03506 0.84086 1.21345 0.95925 1.00574 0.96917 1.20713 0.96991 0.83889 1.04668 1.25471 0.91332 0.99811 0.92948 1.74121 1.22612 1.03290 1.18702 1.74418 1.06042 1.17603 1.21883 1.27028 1.02693 0.92468 0.90763 1.46561 1.25440 1.19999 1.23761 1.22809 0.99361 0.95700 0.83208 1.21461 0.98012 0.92583 1.03506 0.93936 0.79544 0.94140 0.94532 0.93430 0.92779 0.74381 0.93461 0.87736 0.87001 0.85420 0.72879 0.85267 0.84574 0.93151 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.98 45.02 29.55 68.60 2.03 47.04 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.25 -13.30 9.99 84.03 0.84 -12.46 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.75 -36.96 5.60 -343.46 -1.92 -38.89 16 10 C 0.15 5.28 6.37 86.38 0.55 5.83 16 11 C 0.13 3.99 5.79 86.38 0.50 4.49 16 12 N -0.71 -15.08 5.28 -463.05 -2.45 -17.53 16 13 C 0.51 11.03 7.12 87.66 0.62 11.65 16 14 O -0.59 -18.81 15.53 -3.03 -0.05 -18.86 16 15 C -0.10 -1.03 1.97 -12.90 -0.03 -1.06 16 16 H 0.14 0.44 7.67 -2.39 -0.02 0.42 16 17 C -0.11 -1.14 4.88 30.16 0.15 -1.00 16 18 C -0.02 -0.20 6.02 30.45 0.18 -0.02 16 19 C 0.17 2.94 7.03 138.78 0.98 3.91 16 20 N -0.35 -9.03 12.23 -49.93 -0.61 -9.64 16 21 N -0.36 -9.13 12.24 -60.36 -0.74 -9.86 16 22 C 0.16 2.40 12.83 180.30 2.31 4.72 16 23 N -0.47 -5.70 2.72 -515.31 -1.40 -7.10 16 24 C 0.11 0.45 6.52 86.41 0.56 1.01 16 25 C -0.12 -1.28 4.49 30.12 0.14 -1.14 16 26 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.37 20.07 7.67 -92.71 -0.71 19.36 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.42 5.76 7.25 -92.71 -0.67 5.09 16 33 H 0.05 0.80 7.91 -2.39 -0.02 0.78 16 34 H 0.10 0.79 6.58 -2.38 -0.02 0.78 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.13 0.20 7.89 -2.38 -0.02 0.18 16 37 H 0.26 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.13 -0.16 7.87 -2.39 -0.02 -0.18 16 39 H 0.14 -0.14 8.13 -2.39 -0.02 -0.16 16 40 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 41 H 0.10 1.24 7.40 -2.39 -0.02 1.22 16 Total: -1.00 -85.02 337.42 2.09 -82.93 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -0.32 Total: 18.95 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 7.27 Total: 11.99 kcal Atomic # 7 Polarization: -135.22 SS G_CDS: -6.84 Total: -142.06 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -85.02 2.09 -82.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131503903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.559 kcal (2) G-P(sol) polarization free energy of solvation -85.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds