Wall clock time and date at job start Tue Mar 31 2020 02:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47030 * 2 1 4 4 C 1.35675 * 117.00248 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.68314 * 179.72716 * 4 3 2 6 6 C 1.38384 * 119.11112 * 179.75573 * 5 4 3 7 7 C 1.38826 * 118.48284 * 0.51069 * 6 5 4 8 8 C 1.38048 * 119.28948 * 359.72773 * 7 6 5 9 9 C 1.50704 * 119.58253 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.46737 * 125.02541 * 9 8 7 11 11 O 1.21283 * 120.00293 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00100 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00184 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47229 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.47229 * 180.02562 * 14 13 12 16 16 C 1.36933 * 119.99829 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00114 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00147 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99508 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00264 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47179 * 59.99889 * 20 18 16 22 22 H 1.48500 * 109.47123 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46921 * 299.99777 * 20 18 16 24 24 N 1.31963 * 120.83448 * 0.02569 * 8 7 6 25 25 H 1.08999 * 109.47266 * 60.00156 * 1 2 3 26 26 H 1.09003 * 109.46579 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47279 * 300.00102 * 1 2 3 28 28 H 1.08998 * 109.47781 * 239.99970 * 2 1 3 29 29 H 1.08999 * 109.47266 * 119.99844 * 2 1 3 30 30 H 1.08003 * 120.45041 * 0.02562 * 5 4 3 31 31 H 1.07999 * 120.75530 * 180.24165 * 6 5 4 32 32 H 1.08003 * 120.35720 * 179.75404 * 7 6 5 33 33 H 1.08993 * 109.47226 * 245.02531 * 9 8 7 34 34 H 1.09000 * 109.46665 * 5.03185 * 9 8 7 35 35 H 0.97002 * 119.99713 * 0.02562 * 12 10 9 36 36 H 1.09006 * 109.46963 * 299.99870 * 13 12 10 37 37 H 1.08998 * 109.47286 * 59.99720 * 13 12 10 38 38 H 1.09001 * 109.46516 * 299.99975 * 14 13 12 39 39 H 1.08998 * 109.47334 * 59.99604 * 14 13 12 40 40 H 0.96995 * 120.00108 * 359.97438 * 15 14 13 41 41 H 0.97001 * 119.99433 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8751 2.8118 -0.0052 6 6 5.2488 2.9795 0.0006 7 6 6.0538 1.8485 0.0011 8 6 5.4646 0.6001 0.0015 9 6 6.3323 -0.6321 0.0014 10 6 5.9551 -1.5120 1.1653 11 8 5.0687 -1.1723 1.9201 12 7 6.6028 -2.6765 1.3673 13 6 6.2358 -3.5322 2.4984 14 6 7.1175 -4.7826 2.4992 15 7 6.7501 -5.6385 3.6299 16 6 7.4081 -6.8218 3.8351 17 1 8.1977 -7.1241 3.1631 18 6 7.0604 -7.6326 4.9068 19 7 6.0977 -7.2643 5.7254 20 14 7.9575 -9.2471 5.1863 21 1 9.4037 -8.9804 5.3926 22 1 7.4015 -9.9209 6.3871 23 1 7.7800 -10.1237 4.0007 24 7 4.1512 0.4721 0.0010 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2192 3.6698 -0.0096 31 1 5.6845 3.9677 0.0003 32 1 7.1296 1.9443 0.0015 33 1 6.1864 -1.1791 -0.9299 34 1 7.3785 -0.3397 0.0912 35 1 7.3120 -2.9481 0.7638 36 1 6.3809 -2.9851 3.4300 37 1 5.1897 -3.8249 2.4081 38 1 6.9728 -5.3297 1.5677 39 1 8.1635 -4.4895 2.5897 40 1 6.0407 -5.3672 4.2332 41 1 5.8550 -7.8308 6.4745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131576307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:35 Heat of formation + Delta-G solvation = -59.039462 kcal Electronic energy + Delta-G solvation = -22366.173185 eV Core-core repulsion = 18859.605259 eV Total energy + Delta-G solvation = -3506.567926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72715 -40.55016 -38.99722 -37.28919 -35.45349 -34.10665 -33.22967 -33.08239 -32.03464 -29.95400 -28.42987 -25.64623 -24.88133 -23.77258 -23.23966 -22.87851 -21.38647 -19.37814 -19.24953 -18.18929 -17.59299 -17.25319 -16.87462 -16.84798 -16.63515 -16.46424 -15.53448 -15.29808 -15.18207 -14.98723 -14.88423 -14.70704 -14.28622 -13.90731 -13.47367 -13.42732 -13.12647 -13.04286 -12.91168 -12.77422 -12.59166 -12.52292 -12.46811 -12.12341 -11.87067 -11.72459 -10.98063 -10.97833 -10.78228 -10.47628 -10.10350 -9.39406 -9.07492 -7.97282 -5.29032 0.15487 0.41328 1.47981 1.52027 1.58145 1.70508 2.08687 2.12799 2.57663 2.86302 3.12929 3.36835 3.79460 3.89273 4.01436 4.04783 4.06342 4.16463 4.18101 4.21082 4.22927 4.37750 4.41077 4.52107 4.56144 4.58465 4.79835 4.83126 4.89393 5.03598 5.05295 5.13778 5.16200 5.26649 5.41527 5.49277 5.57672 6.23295 6.27631 6.61213 6.97690 7.29172 7.33011 8.01402 8.24198 9.26405 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022131 B = 0.002577 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.902926 B =10863.580790 C =11808.060142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 O -0.321 6.321 4 C 0.290 3.710 5 C -0.202 4.202 6 C -0.038 4.038 7 C -0.198 4.198 8 C 0.154 3.846 9 C -0.083 4.083 10 C 0.511 3.489 11 O -0.578 6.578 12 N -0.712 5.712 13 C 0.131 3.869 14 C 0.150 3.850 15 N -0.749 5.749 16 C -0.249 4.249 17 H 0.084 0.916 18 C -0.078 4.078 19 N -0.973 5.973 20 Si 0.981 3.019 21 H -0.274 1.274 22 H -0.297 1.297 23 H -0.275 1.275 24 N -0.545 5.545 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.155 0.845 31 H 0.181 0.819 32 H 0.175 0.825 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.419 0.581 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.373 0.627 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 22.045 -18.484 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.006 4.006 3 O -0.230 6.230 4 C 0.111 3.889 5 C -0.222 4.222 6 C -0.063 4.063 7 C -0.218 4.218 8 C 0.017 3.983 9 C -0.122 4.122 10 C 0.298 3.702 11 O -0.457 6.457 12 N -0.366 5.366 13 C 0.005 3.995 14 C 0.023 3.977 15 N -0.392 5.392 16 C -0.381 4.381 17 H 0.102 0.898 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.809 3.191 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.201 1.201 24 N -0.269 5.269 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.173 0.827 31 H 0.198 0.802 32 H 0.192 0.808 33 H 0.153 0.847 34 H 0.174 0.826 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.204 0.796 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.418 21.501 -17.998 28.076 hybrid contribution 0.320 -0.641 0.690 0.995 sum -1.098 20.860 -17.308 27.128 Atomic orbital electron populations 1.21807 0.90804 1.03997 1.03554 1.22577 0.96297 0.80533 1.01187 1.86174 1.17501 1.31165 1.88141 1.20205 0.84092 0.90902 0.93701 1.21407 0.97387 0.95062 1.08347 1.21852 0.91371 1.01053 0.92040 1.22201 1.03265 0.91490 1.04857 1.20705 0.88299 0.95408 0.93869 1.20765 1.01565 0.92075 0.97816 1.21054 0.81025 0.81496 0.86632 1.90735 1.32365 1.73650 1.48954 1.45696 1.39761 1.20664 1.30441 1.21062 0.98277 0.90871 0.89257 1.20852 0.96540 0.89370 0.90903 1.42453 1.43523 1.21873 1.31380 1.19637 1.13385 0.96437 1.08602 0.89767 1.25706 1.00223 1.03035 0.98089 1.69844 1.33920 1.40100 1.18427 0.85107 0.78023 0.79055 0.76920 1.19964 1.22361 1.20066 1.66980 1.07305 1.34184 1.18417 0.90640 0.88965 0.91737 0.92226 0.94126 0.82713 0.80184 0.80800 0.84714 0.82563 0.74337 0.93321 0.93680 0.94455 0.94161 0.79609 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 10.28 71.98 0.74 -1.89 16 2 C 0.07 1.77 6.03 71.98 0.43 2.21 16 3 O -0.32 -8.85 10.12 -89.92 -0.91 -9.76 16 4 C 0.29 7.87 7.49 84.79 0.63 8.51 16 5 C -0.20 -3.98 10.04 22.47 0.23 -3.75 16 6 C -0.04 -0.54 10.17 22.45 0.23 -0.31 16 7 C -0.20 -3.00 9.70 22.37 0.22 -2.78 16 8 C 0.15 3.39 5.76 42.49 0.24 3.64 16 9 C -0.08 -1.36 6.10 29.10 0.18 -1.18 16 10 C 0.51 14.06 7.76 87.66 0.68 14.74 16 11 O -0.58 -22.59 15.33 -3.04 -0.05 -22.64 16 12 N -0.71 -18.06 5.56 -463.05 -2.57 -20.63 16 13 C 0.13 4.57 5.79 86.38 0.50 5.07 16 14 C 0.15 5.74 6.37 86.38 0.55 6.29 16 15 N -0.75 -38.63 5.60 -343.45 -1.92 -40.55 16 16 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 19 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 20 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 N -0.55 -15.67 8.08 -297.00 -2.40 -18.07 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 29 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 30 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 31 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.17 1.23 7.94 -2.91 -0.02 1.21 16 33 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.16 1.14 7.86 -2.39 -0.02 1.12 16 35 H 0.42 7.16 8.47 -92.71 -0.79 6.38 16 36 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.37 20.92 7.67 -92.71 -0.71 20.21 16 41 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -81.58 355.16 -0.05 -81.63 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -0.45 Total: 29.09 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.94 Total: 13.45 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -6.61 Total: -139.66 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.96 Total: -32.40 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -81.58 -0.05 -81.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131576307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.593 kcal (2) G-P(sol) polarization free energy of solvation -81.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds