Wall clock time and date at job start Tue Mar 31 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33472 * 125.49919 * 2 1 4 4 C 1.30327 * 109.72679 * 180.02562 * 3 2 1 5 5 N 1.34676 * 108.04439 * 0.05517 * 4 3 2 6 6 N 1.30979 * 125.49631 * 180.02562 * 2 1 3 7 7 C 1.46298 * 125.04685 * 179.91206 * 5 4 3 8 8 C 1.53302 * 108.77446 * 342.98446 * 7 5 4 9 9 H 1.09000 * 109.46764 * 290.11077 * 8 7 5 10 10 C 1.50702 * 109.46819 * 170.12453 * 8 7 5 11 11 O 1.21283 * 120.00262 * 240.00364 * 10 8 7 12 12 N 1.34777 * 119.99928 * 59.72270 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.47555 * 180.02562 * 14 13 12 16 16 C 1.36929 * 120.00268 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00173 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00157 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00135 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46986 * 89.99888 * 20 18 16 22 22 H 1.48499 * 109.47352 * 210.00042 * 20 18 16 23 23 H 1.48505 * 109.47119 * 330.00045 * 20 18 16 24 24 C 1.53158 * 109.49590 * 50.11866 * 8 7 5 25 25 C 1.50929 * 127.90250 * 180.08997 * 4 3 2 26 26 H 1.09006 * 109.47633 * 89.97047 * 1 2 3 27 27 H 1.09003 * 109.47280 * 209.97317 * 1 2 3 28 28 H 1.09001 * 109.47184 * 329.97011 * 1 2 3 29 29 H 1.09005 * 109.58776 * 223.20157 * 7 5 4 30 30 H 1.08991 * 109.70919 * 102.84502 * 7 5 4 31 31 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 32 32 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 33 33 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 34 34 H 1.08998 * 109.47382 * 300.00439 * 14 13 12 35 35 H 1.09005 * 109.46800 * 60.00640 * 14 13 12 36 36 H 0.97000 * 119.99478 * 0.02562 * 15 14 13 37 37 H 0.97004 * 120.00691 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.50360 * 50.75625 * 24 8 7 39 39 H 1.09001 * 109.51089 * 170.89152 * 24 8 7 40 40 H 1.08997 * 109.72312 * 283.67180 * 25 4 3 41 41 H 1.08999 * 109.71307 * 44.27697 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5362 0.7324 -0.0005 5 7 3.5896 -0.6133 -0.0022 6 7 2.2675 -1.0664 -0.0005 7 6 4.8197 -1.4053 -0.0051 8 6 5.9852 -0.5049 -0.4307 9 1 5.8845 -0.2554 -1.4870 10 6 7.2873 -1.2301 -0.2079 11 8 8.1195 -0.7656 0.5422 12 7 7.5248 -2.3976 -0.8379 13 6 8.7882 -3.1056 -0.6168 14 6 8.8036 -4.3922 -1.4446 15 7 10.0667 -5.1005 -1.2229 16 6 10.3083 -6.2862 -1.8637 17 1 9.5680 -6.6992 -2.5329 18 6 11.5049 -6.9576 -1.6533 19 7 12.4075 -6.4542 -0.8383 20 14 11.8349 -8.5748 -2.5280 21 1 12.5007 -8.3075 -3.8282 22 1 12.7165 -9.4224 -1.6856 23 1 10.5499 -9.2803 -2.7657 24 6 5.9681 0.7808 0.4014 25 6 4.7522 1.6264 0.0011 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8897 0.5143 29 1 4.7205 -2.2318 -0.7089 30 1 5.0069 -1.7972 0.9946 31 1 6.8593 -2.7692 -1.4379 32 1 9.6193 -2.4689 -0.9199 33 1 8.8862 -3.3521 0.4405 34 1 7.9724 -5.0290 -1.1419 35 1 8.7058 -4.1452 -2.5018 36 1 10.7318 -4.7294 -0.6222 37 1 13.2435 -6.9235 -0.6909 38 1 5.9034 0.5285 1.4598 39 1 6.8815 1.3462 0.2165 40 1 4.9050 2.0415 -0.9951 41 1 4.6132 2.4348 0.7189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131636599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:53 Heat of formation + Delta-G solvation = 52.787290 kcal Electronic energy + Delta-G solvation = -22621.379798 eV Core-core repulsion = 19151.953795 eV Total energy + Delta-G solvation = -3469.426003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.66882 -40.17852 -37.06853 -35.81455 -34.06479 -33.52306 -32.38441 -31.32171 -30.07664 -28.85251 -27.59231 -24.77756 -24.13104 -23.10622 -21.60712 -21.15100 -20.63796 -19.67683 -17.66378 -17.20827 -17.04221 -16.42930 -15.91401 -15.57636 -15.09074 -14.73028 -14.56190 -14.51614 -14.27616 -13.87349 -13.53386 -13.26334 -13.18869 -12.99206 -12.89162 -12.65933 -12.24984 -12.04688 -11.66382 -11.54973 -11.33239 -11.18912 -10.89970 -10.85909 -10.33697 -10.19224 -10.06160 -10.00070 -9.79904 -9.57928 -9.14347 -8.95129 -7.06325 -5.85326 -3.16552 1.30256 1.82986 2.42442 2.57523 2.94952 3.38589 3.43666 3.45583 3.56503 3.79340 4.06983 4.13985 4.36049 4.47458 4.53199 4.68788 4.78127 4.83360 4.95050 5.08226 5.23364 5.26418 5.39987 5.42998 5.44916 5.49673 5.51747 5.66348 5.68518 5.84973 6.02303 6.04776 6.16688 6.31539 6.45021 6.59573 6.59658 7.34599 7.60380 7.83909 8.02337 8.31978 9.43500 9.97198 10.31722 11.37087 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029088 B = 0.002467 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.362539 B =11347.750972 C =12156.853341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.216 3.784 3 N -0.539 5.539 4 C 0.280 3.720 5 N -0.375 5.375 6 N -0.313 5.313 7 C 0.138 3.862 8 C -0.125 4.125 9 H 0.113 0.887 10 C 0.521 3.479 11 O -0.527 6.527 12 N -0.720 5.720 13 C 0.109 3.891 14 C 0.144 3.856 15 N -0.729 5.729 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C -0.109 4.109 25 C -0.042 4.042 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.400 0.600 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.409 16.651 0.893 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.066 4.066 3 N -0.267 5.267 4 C 0.003 3.997 5 N -0.166 5.166 6 N -0.142 5.142 7 C 0.015 3.985 8 C -0.147 4.147 9 H 0.131 0.869 10 C 0.305 3.695 11 O -0.403 6.403 12 N -0.371 5.371 13 C -0.014 4.014 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C -0.147 4.147 25 C -0.081 4.081 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.234 0.766 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.131 16.327 1.349 25.954 hybrid contribution 0.412 -1.137 -0.646 1.371 sum -19.719 15.189 0.703 24.901 Atomic orbital electron populations 1.20080 0.83822 1.04009 1.03704 1.24446 0.98286 0.85512 0.98358 1.70188 0.99846 1.30830 1.25885 1.24366 0.95070 0.83968 0.96262 1.50110 1.05572 1.05857 1.55046 1.77973 0.86424 1.22475 1.27308 1.21746 0.78402 0.93592 1.04728 1.21760 0.92356 0.96828 1.03774 0.86943 1.19926 0.87798 0.81153 0.80633 1.90758 1.47077 1.66135 1.36299 1.46002 1.20996 1.22612 1.47466 1.21649 0.84535 0.93947 1.01269 1.20758 0.91226 0.90207 0.96218 1.42177 1.15568 1.24456 1.55250 1.19176 1.00668 0.97289 1.20550 0.91024 1.24788 0.96746 0.99313 0.99930 1.69661 1.08469 1.40018 1.39642 0.86145 0.77743 0.83170 0.78819 1.21581 1.21643 1.20685 1.21593 0.98665 0.93934 1.00499 1.20464 0.86586 0.96024 1.05039 0.89873 0.90012 0.89595 0.87848 0.88538 0.76579 0.90983 0.90993 0.95773 0.95775 0.77980 0.93303 0.90020 0.87989 0.87935 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.00 0.38 -0.03 16 2 C 0.22 2.47 8.15 -156.43 -1.27 1.19 16 3 N -0.54 -6.43 11.18 -8.03 -0.09 -6.52 16 4 C 0.28 2.88 7.72 -155.78 -1.20 1.67 16 5 N -0.38 -4.03 4.04 -58.30 -0.24 -4.26 16 6 N -0.31 -3.91 12.74 32.50 0.41 -3.50 16 7 C 0.14 1.15 6.42 -3.99 -0.03 1.13 16 8 C -0.12 -0.97 2.54 -91.53 -0.23 -1.20 16 9 H 0.11 0.69 8.12 -51.93 -0.42 0.27 16 10 C 0.52 5.91 7.14 -10.98 -0.08 5.83 16 11 O -0.53 -8.09 15.83 5.55 0.09 -8.00 16 12 N -0.72 -8.18 5.46 -60.29 -0.33 -8.51 16 13 C 0.11 1.70 5.79 -4.04 -0.02 1.67 16 14 C 0.14 2.65 6.37 -4.04 -0.03 2.62 16 15 N -0.73 -17.94 5.60 -59.91 -0.34 -18.28 16 16 C -0.25 -6.73 9.99 -15.06 -0.15 -6.88 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.11 -0.79 4.68 -26.43 -0.12 -0.92 16 25 C -0.04 -0.27 6.33 -27.55 -0.17 -0.45 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.10 0.73 7.87 -51.93 -0.41 0.33 16 30 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.40 3.45 8.11 -40.82 -0.33 3.12 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.39 10.07 7.67 -40.82 -0.31 9.76 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 39 H 0.10 0.74 7.80 -51.93 -0.41 0.33 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -35.28 345.16 -8.69 -43.97 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.07 Total: 5.76 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -3.03 Total: 4.24 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: 0.15 Total: -68.14 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.28 -8.69 -43.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131636599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.760 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds