Wall clock time and date at job start Tue Mar 31 2020 03:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33472 * 125.49919 * 2 1 4 4 C 1.30327 * 109.72679 * 180.02562 * 3 2 1 5 5 N 1.34676 * 108.04439 * 0.05517 * 4 3 2 6 6 N 1.30979 * 125.49631 * 180.02562 * 2 1 3 7 7 C 1.46298 * 125.04685 * 179.91206 * 5 4 3 8 8 C 1.53302 * 108.77446 * 342.98446 * 7 5 4 9 9 H 1.09000 * 109.46764 * 290.11077 * 8 7 5 10 10 C 1.50702 * 109.46819 * 170.12453 * 8 7 5 11 11 O 1.21283 * 120.00262 * 240.00364 * 10 8 7 12 12 N 1.34777 * 119.99928 * 59.72270 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.47555 * 180.02562 * 14 13 12 16 16 C 1.36929 * 120.00268 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00173 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00157 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00135 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46986 * 89.99888 * 20 18 16 22 22 H 1.48499 * 109.47352 * 210.00042 * 20 18 16 23 23 H 1.48505 * 109.47119 * 330.00045 * 20 18 16 24 24 C 1.53158 * 109.49590 * 50.11866 * 8 7 5 25 25 C 1.50929 * 127.90250 * 180.08997 * 4 3 2 26 26 H 1.09006 * 109.47633 * 89.97047 * 1 2 3 27 27 H 1.09003 * 109.47280 * 209.97317 * 1 2 3 28 28 H 1.09001 * 109.47184 * 329.97011 * 1 2 3 29 29 H 1.09005 * 109.58776 * 223.20157 * 7 5 4 30 30 H 1.08991 * 109.70919 * 102.84502 * 7 5 4 31 31 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 32 32 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 33 33 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 34 34 H 1.08998 * 109.47382 * 300.00439 * 14 13 12 35 35 H 1.09005 * 109.46800 * 60.00640 * 14 13 12 36 36 H 0.97000 * 119.99478 * 0.02562 * 15 14 13 37 37 H 0.97004 * 120.00691 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.50360 * 50.75625 * 24 8 7 39 39 H 1.09001 * 109.51089 * 170.89152 * 24 8 7 40 40 H 1.08997 * 109.72312 * 283.67180 * 25 4 3 41 41 H 1.08999 * 109.71307 * 44.27697 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5362 0.7324 -0.0005 5 7 3.5896 -0.6133 -0.0022 6 7 2.2675 -1.0664 -0.0005 7 6 4.8197 -1.4053 -0.0051 8 6 5.9852 -0.5049 -0.4307 9 1 5.8845 -0.2554 -1.4870 10 6 7.2873 -1.2301 -0.2079 11 8 8.1195 -0.7656 0.5422 12 7 7.5248 -2.3976 -0.8379 13 6 8.7882 -3.1056 -0.6168 14 6 8.8036 -4.3922 -1.4446 15 7 10.0667 -5.1005 -1.2229 16 6 10.3083 -6.2862 -1.8637 17 1 9.5680 -6.6992 -2.5329 18 6 11.5049 -6.9576 -1.6533 19 7 12.4075 -6.4542 -0.8383 20 14 11.8349 -8.5748 -2.5280 21 1 12.5007 -8.3075 -3.8282 22 1 12.7165 -9.4224 -1.6856 23 1 10.5499 -9.2803 -2.7657 24 6 5.9681 0.7808 0.4014 25 6 4.7522 1.6264 0.0011 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8897 0.5143 29 1 4.7205 -2.2318 -0.7089 30 1 5.0069 -1.7972 0.9946 31 1 6.8593 -2.7692 -1.4379 32 1 9.6193 -2.4689 -0.9199 33 1 8.8862 -3.3521 0.4405 34 1 7.9724 -5.0290 -1.1419 35 1 8.7058 -4.1452 -2.5018 36 1 10.7318 -4.7294 -0.6222 37 1 13.2435 -6.9235 -0.6909 38 1 5.9034 0.5285 1.4598 39 1 6.8815 1.3462 0.2165 40 1 4.9050 2.0415 -0.9951 41 1 4.6132 2.4348 0.7189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131636599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:52 Heat of formation + Delta-G solvation = 27.332046 kcal Electronic energy + Delta-G solvation = -22622.483620 eV Core-core repulsion = 19151.953795 eV Total energy + Delta-G solvation = -3470.529825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.43185 -41.13998 -37.91529 -37.21925 -35.58199 -34.27514 -33.35863 -32.86580 -30.93336 -29.73071 -28.90592 -25.84201 -25.33400 -24.21803 -23.06013 -21.97814 -21.51138 -20.42013 -19.34174 -18.37283 -17.87622 -17.19777 -16.96861 -16.69141 -16.45707 -16.03265 -15.44641 -15.34669 -15.27664 -15.04425 -14.81567 -14.74946 -14.21007 -13.91714 -13.52521 -13.34305 -13.10212 -13.05164 -12.83800 -12.71381 -12.65521 -12.53482 -12.25641 -12.08998 -11.97121 -11.87630 -11.18919 -11.02444 -11.00091 -10.79220 -10.33071 -10.20526 -9.07178 -7.98018 -5.29054 0.53310 1.07521 1.48087 1.49916 1.53094 1.58310 1.79640 1.97450 2.56375 2.92135 3.10465 3.36451 3.38272 3.45931 3.70857 3.80185 3.96323 4.03794 4.14053 4.18554 4.22746 4.24654 4.37858 4.51623 4.59302 4.73530 4.76246 4.88789 4.92680 4.94737 5.01567 5.10400 5.13203 5.28995 5.32801 5.45906 5.48134 5.75144 6.23123 6.42101 7.05438 7.10222 7.29594 8.01939 8.23926 9.25452 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029088 B = 0.002467 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.362539 B =11347.750972 C =12156.853341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.205 3.795 3 N -0.564 5.564 4 C 0.276 3.724 5 N -0.381 5.381 6 N -0.346 5.346 7 C 0.136 3.864 8 C -0.108 4.108 9 H 0.139 0.861 10 C 0.526 3.474 11 O -0.568 6.568 12 N -0.709 5.709 13 C 0.127 3.873 14 C 0.147 3.853 15 N -0.747 5.747 16 C -0.247 4.247 17 H 0.082 0.918 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.977 3.023 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.267 1.267 24 C -0.105 4.105 25 C -0.033 4.033 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.417 0.583 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.374 0.626 37 H 0.252 0.748 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.011 17.117 -0.384 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 N -0.293 5.293 4 C 0.000 4.000 5 N -0.172 5.172 6 N -0.175 5.175 7 C 0.014 3.986 8 C -0.130 4.130 9 H 0.157 0.843 10 C 0.312 3.688 11 O -0.446 6.446 12 N -0.361 5.361 13 C 0.002 3.998 14 C 0.020 3.980 15 N -0.391 5.391 16 C -0.379 4.379 17 H 0.100 0.900 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.806 3.194 21 H -0.213 1.213 22 H -0.224 1.224 23 H -0.191 1.191 24 C -0.143 4.143 25 C -0.072 4.072 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.136 0.864 30 H 0.109 0.891 31 H 0.254 0.746 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.206 0.794 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.806 16.796 0.036 27.525 hybrid contribution 0.833 -1.213 -0.233 1.490 sum -20.973 15.583 -0.197 26.129 Atomic orbital electron populations 1.20235 0.81565 1.04870 1.04805 1.25175 0.99808 0.85200 0.97426 1.70214 1.00674 1.31380 1.27060 1.25034 0.95697 0.84245 0.94978 1.50193 1.05526 1.06263 1.55201 1.77907 0.87320 1.23521 1.28776 1.21835 0.77867 0.93911 1.04947 1.21658 0.89679 0.96245 1.05440 0.84289 1.20449 0.88467 0.80560 0.79349 1.90752 1.48779 1.67076 1.37970 1.45800 1.19914 1.22528 1.47870 1.21176 0.86093 0.92817 0.99680 1.20873 0.88868 0.90980 0.97299 1.42419 1.17400 1.24398 1.54860 1.19627 1.00568 0.97890 1.19792 0.89986 1.25652 0.96975 1.02970 1.01329 1.69823 1.08868 1.41574 1.41727 0.85087 0.77815 0.79137 0.77371 1.21285 1.22357 1.19135 1.21559 0.99217 0.93814 0.99720 1.20604 0.84441 0.95433 1.06761 0.88545 0.89225 0.88615 0.86398 0.89132 0.74619 0.92378 0.92543 0.94564 0.94435 0.79392 0.93904 0.91252 0.87585 0.85613 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.51 71.23 0.75 0.02 16 2 C 0.21 4.50 8.15 138.48 1.13 5.63 16 3 N -0.56 -12.73 11.18 -179.31 -2.01 -14.74 16 4 C 0.28 5.21 7.72 138.37 1.07 6.28 16 5 N -0.38 -7.64 4.04 -338.35 -1.37 -9.01 16 6 N -0.35 -8.34 12.74 -51.08 -0.65 -8.99 16 7 C 0.14 2.04 6.42 86.52 0.56 2.60 16 8 C -0.11 -1.43 2.54 -11.39 -0.03 -1.46 16 9 H 0.14 1.19 8.12 -2.39 -0.02 1.17 16 10 C 0.53 11.14 7.14 87.66 0.63 11.76 16 11 O -0.57 -17.11 15.83 -3.04 -0.05 -17.15 16 12 N -0.71 -14.87 5.46 -463.06 -2.53 -17.39 16 13 C 0.13 3.86 5.79 86.38 0.50 4.36 16 14 C 0.15 5.20 6.37 86.38 0.55 5.75 16 15 N -0.75 -36.67 5.60 -343.46 -1.92 -38.60 16 16 C -0.25 -13.37 9.99 84.03 0.84 -12.53 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 19 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 20 Si 0.98 45.11 29.55 68.60 2.03 47.13 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 C -0.10 -1.33 4.68 30.79 0.14 -1.18 16 25 C -0.03 -0.35 6.33 30.06 0.19 -0.16 16 26 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.12 1.40 7.87 -2.38 -0.02 1.38 16 30 H 0.09 1.47 8.11 -2.39 -0.02 1.45 16 31 H 0.42 6.07 8.11 -92.71 -0.75 5.32 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.37 19.89 7.67 -92.71 -0.71 19.18 16 37 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 38 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 39 H 0.11 1.32 7.80 -2.39 -0.02 1.31 16 40 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -76.42 345.16 0.17 -76.25 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.41 Total: 23.91 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 6.79 Total: 17.19 kcal Atomic # 7 Polarization: -139.14 SS G_CDS: -8.19 Total: -147.33 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.05 Total: -17.15 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.42 0.17 -76.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131636599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.580 kcal (2) G-P(sol) polarization free energy of solvation -76.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds