Wall clock time and date at job start Tue Mar 31 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48494 * 109.47203 * 269.99912 * 3 2 1 5 5 H 1.48494 * 109.47444 * 30.00374 * 3 2 1 6 6 H 1.48504 * 109.46767 * 150.00165 * 3 2 1 7 7 C 1.38814 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47194 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47194 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00271 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 11 16 16 N 1.46505 * 109.47064 * 180.02562 * 15 13 12 17 17 N 1.29097 * 126.00602 * 269.69229 * 16 15 13 18 18 N 1.29023 * 110.25825 * 179.77566 * 17 16 15 19 19 C 1.32907 * 108.63382 * 0.41503 * 18 17 16 20 20 C 1.34397 * 126.00190 * 90.00110 * 16 15 13 21 21 C 1.50527 * 129.25890 * 0.21015 * 20 16 15 22 22 C 1.53437 * 108.32805 * 163.46004 * 21 20 16 23 23 C 1.53110 * 109.54995 * 49.71918 * 22 21 20 24 24 C 1.50598 * 129.16673 * 179.85760 * 19 18 17 25 25 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99550 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47021 * 59.99865 * 10 9 7 28 28 H 1.09001 * 109.47001 * 300.00033 * 10 9 7 29 29 H 1.09002 * 109.47045 * 60.00127 * 11 10 9 30 30 H 1.09001 * 109.47375 * 300.00051 * 11 10 9 31 31 H 0.97005 * 120.00266 * 0.02562 * 12 11 10 32 32 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 33 33 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 34 34 H 1.09007 * 109.69705 * 283.16850 * 21 20 16 35 35 H 1.08995 * 109.69732 * 43.75053 * 21 20 16 36 36 H 1.08995 * 109.45932 * 169.74057 * 22 21 20 37 37 H 1.08991 * 109.45741 * 289.71349 * 22 21 20 38 38 H 1.08999 * 109.45563 * 49.96709 * 23 22 21 39 39 H 1.08998 * 109.45037 * 169.90897 * 23 22 21 40 40 H 1.09003 * 109.68948 * 43.76784 * 24 19 18 41 41 H 1.08999 * 109.72960 * 283.20244 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 7 1.7965 -6.0884 0.0018 13 6 1.1227 -7.2556 0.0030 14 8 -0.0900 -7.2557 0.0030 15 6 1.8763 -8.5607 0.0042 16 7 0.9243 -9.6743 0.0047 17 7 0.4351 -10.2540 1.0493 18 7 -0.3768 -11.1939 0.6995 19 6 -0.4208 -11.2449 -0.6278 20 6 0.4114 -10.2756 -1.0823 21 6 0.6640 -9.9884 -2.5382 22 6 0.1796 -11.1912 -3.3584 23 6 -1.2421 -11.5645 -2.9298 24 6 -1.2124 -12.1658 -1.5185 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3881 0.0005 27 1 2.6849 -3.7144 0.8905 28 1 2.6849 -3.7145 -0.8895 29 1 0.4370 -4.7622 -0.8886 30 1 0.4377 -4.7618 0.8914 31 1 2.7666 -6.0884 0.0021 32 1 2.5030 -8.6176 0.8942 33 1 2.5030 -8.6192 -0.8858 34 1 0.1153 -9.0951 -2.8370 35 1 1.7307 -9.8371 -2.7031 36 1 0.1836 -10.9338 -4.4175 37 1 0.8441 -12.0382 -3.1880 38 1 -1.8678 -10.6720 -2.9310 39 1 -1.6514 -12.2954 -3.6271 40 1 -2.2295 -12.2601 -1.1381 41 1 -0.7386 -13.1470 -1.5473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133960099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:30 Heat of formation + Delta-G solvation = 64.330660 kcal Electronic energy + Delta-G solvation = -22774.037118 eV Core-core repulsion = 19305.111674 eV Total energy + Delta-G solvation = -3468.925445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.56039 -39.84782 -37.35349 -35.97301 -34.93891 -34.03650 -31.50215 -30.87100 -30.33937 -29.19338 -27.30213 -24.42442 -23.81910 -22.91672 -22.10499 -21.57797 -20.54328 -19.85720 -17.97716 -17.66413 -17.16367 -16.22810 -15.92693 -15.49897 -15.14888 -14.63504 -14.46540 -14.30489 -14.20531 -14.08199 -13.82816 -13.66320 -13.27405 -12.97379 -12.80928 -12.45166 -11.71010 -11.59414 -11.49631 -11.34580 -11.30800 -11.21743 -10.92836 -10.87040 -10.66130 -10.61299 -10.18109 -9.93949 -9.77508 -9.20407 -8.97228 -8.96371 -7.07738 -5.86184 -3.17794 1.34802 1.96126 2.27171 2.44227 2.98201 3.37773 3.42656 3.44949 3.88600 4.12532 4.30798 4.34333 4.43059 4.51372 4.53210 4.57551 4.67880 5.02981 5.13370 5.17575 5.24172 5.34695 5.41430 5.46314 5.54484 5.62924 5.63905 5.76870 5.81737 5.83149 5.94472 5.98537 6.10293 6.25743 6.33988 6.56369 6.56982 7.25076 7.59007 7.92669 8.30935 8.40200 9.42358 9.95896 10.30192 11.36265 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.033104 B = 0.002453 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.620958 B =11412.931788 C =11665.917916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.146 3.854 11 C 0.111 3.889 12 N -0.714 5.714 13 C 0.497 3.503 14 O -0.518 6.518 15 C 0.094 3.906 16 N -0.268 5.268 17 N -0.085 5.085 18 N -0.260 5.260 19 C -0.022 4.022 20 C -0.006 4.006 21 C -0.049 4.049 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.031 4.031 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.403 0.597 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -24.926 -7.409 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.012 4.012 12 N -0.366 5.366 13 C 0.279 3.721 14 O -0.393 6.393 15 C -0.031 4.031 16 N -0.059 5.059 17 N -0.062 5.062 18 N -0.125 5.125 19 C -0.162 4.162 20 C -0.140 4.140 21 C -0.088 4.088 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.070 4.070 25 H 0.067 0.933 26 H 0.220 0.780 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.237 0.763 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.271 -24.788 -5.802 25.814 hybrid contribution 0.804 1.312 -0.931 1.799 sum 5.076 -23.477 -6.734 24.945 Atomic orbital electron populations 1.69662 1.05192 1.25985 1.56929 1.24797 0.95573 0.97899 1.02474 0.86139 0.78618 0.83508 0.77576 1.21570 1.21628 1.20665 1.19175 0.91028 0.83777 1.43798 0.90984 1.42184 1.06022 0.99522 1.89760 1.20747 0.93381 0.85602 0.98545 1.21666 0.95534 0.81099 1.02912 1.45799 1.10606 1.05666 1.74563 1.20318 0.88569 0.85166 0.78054 1.90831 1.13357 1.87018 1.48115 1.21867 0.90298 0.82780 1.08197 1.46249 1.31093 1.23573 1.05016 1.78600 1.10323 1.06268 1.11033 1.74786 1.12989 1.12748 1.11960 1.21609 1.02244 1.00925 0.91387 1.21762 1.01766 0.98374 0.92092 1.20234 1.02054 1.00308 0.86182 1.21567 0.97023 0.97131 0.99378 1.21657 0.97019 1.01653 0.95644 1.19937 0.99164 0.96063 0.91868 0.93265 0.77974 0.95679 0.95709 0.90994 0.90971 0.76287 0.84418 0.84967 0.89366 0.90233 0.90423 0.91213 0.91181 0.90559 0.89822 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -17.99 5.60 -59.91 -0.34 -18.32 16 10 C 0.15 2.66 6.37 -4.05 -0.03 2.63 16 11 C 0.11 1.76 5.79 -4.05 -0.02 1.74 16 12 N -0.71 -8.13 5.56 -60.30 -0.33 -8.47 16 13 C 0.50 6.21 7.90 -10.98 -0.09 6.13 16 14 O -0.52 -9.30 16.43 5.56 0.09 -9.21 16 15 C 0.09 0.79 6.72 -5.19 -0.03 0.76 16 16 N -0.27 -3.31 2.82 -58.43 -0.16 -3.47 16 17 N -0.08 -1.31 13.19 60.35 0.80 -0.51 16 18 N -0.26 -4.06 12.40 33.16 0.41 -3.65 16 19 C -0.02 -0.28 7.11 -83.12 -0.59 -0.87 16 20 C -0.01 -0.07 6.76 -82.50 -0.56 -0.63 16 21 C -0.05 -0.37 5.97 -27.74 -0.17 -0.53 16 22 C -0.11 -0.65 5.90 -26.45 -0.16 -0.81 16 23 C -0.12 -0.80 5.90 -26.45 -0.16 -0.95 16 24 C -0.03 -0.27 6.30 -27.71 -0.17 -0.44 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.39 10.16 7.67 -40.82 -0.31 9.85 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.40 3.08 8.47 -40.82 -0.35 2.73 16 32 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.13 0.55 7.71 -51.93 -0.40 0.15 16 34 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 38 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -37.27 345.66 -6.93 -44.20 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.08 Total: 4.78 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.22 Total: -0.27 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 1.10 Total: -61.61 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.27 -6.93 -44.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133960099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.535 kcal (2) G-P(sol) polarization free energy of solvation -37.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds