Wall clock time and date at job start Tue Mar 31 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48494 * 109.47203 * 269.99912 * 3 2 1 5 5 H 1.48494 * 109.47444 * 30.00374 * 3 2 1 6 6 H 1.48504 * 109.46767 * 150.00165 * 3 2 1 7 7 C 1.38814 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47194 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47194 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00271 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 11 16 16 N 1.46505 * 109.47064 * 180.02562 * 15 13 12 17 17 N 1.29097 * 126.00602 * 269.69229 * 16 15 13 18 18 N 1.29023 * 110.25825 * 179.77566 * 17 16 15 19 19 C 1.32907 * 108.63382 * 0.41503 * 18 17 16 20 20 C 1.34397 * 126.00190 * 90.00110 * 16 15 13 21 21 C 1.50527 * 129.25890 * 0.21015 * 20 16 15 22 22 C 1.53437 * 108.32805 * 163.46004 * 21 20 16 23 23 C 1.53110 * 109.54995 * 49.71918 * 22 21 20 24 24 C 1.50598 * 129.16673 * 179.85760 * 19 18 17 25 25 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99550 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47021 * 59.99865 * 10 9 7 28 28 H 1.09001 * 109.47001 * 300.00033 * 10 9 7 29 29 H 1.09002 * 109.47045 * 60.00127 * 11 10 9 30 30 H 1.09001 * 109.47375 * 300.00051 * 11 10 9 31 31 H 0.97005 * 120.00266 * 0.02562 * 12 11 10 32 32 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 33 33 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 34 34 H 1.09007 * 109.69705 * 283.16850 * 21 20 16 35 35 H 1.08995 * 109.69732 * 43.75053 * 21 20 16 36 36 H 1.08995 * 109.45932 * 169.74057 * 22 21 20 37 37 H 1.08991 * 109.45741 * 289.71349 * 22 21 20 38 38 H 1.08999 * 109.45563 * 49.96709 * 23 22 21 39 39 H 1.08998 * 109.45037 * 169.90897 * 23 22 21 40 40 H 1.09003 * 109.68948 * 43.76784 * 24 19 18 41 41 H 1.08999 * 109.72960 * 283.20244 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 7 1.7965 -6.0884 0.0018 13 6 1.1227 -7.2556 0.0030 14 8 -0.0900 -7.2557 0.0030 15 6 1.8763 -8.5607 0.0042 16 7 0.9243 -9.6743 0.0047 17 7 0.4351 -10.2540 1.0493 18 7 -0.3768 -11.1939 0.6995 19 6 -0.4208 -11.2449 -0.6278 20 6 0.4114 -10.2756 -1.0823 21 6 0.6640 -9.9884 -2.5382 22 6 0.1796 -11.1912 -3.3584 23 6 -1.2421 -11.5645 -2.9298 24 6 -1.2124 -12.1658 -1.5185 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3881 0.0005 27 1 2.6849 -3.7144 0.8905 28 1 2.6849 -3.7145 -0.8895 29 1 0.4370 -4.7622 -0.8886 30 1 0.4377 -4.7618 0.8914 31 1 2.7666 -6.0884 0.0021 32 1 2.5030 -8.6176 0.8942 33 1 2.5030 -8.6192 -0.8858 34 1 0.1153 -9.0951 -2.8370 35 1 1.7307 -9.8371 -2.7031 36 1 0.1836 -10.9338 -4.4175 37 1 0.8441 -12.0382 -3.1880 38 1 -1.8678 -10.6720 -2.9310 39 1 -1.6514 -12.2954 -3.6271 40 1 -2.2295 -12.2601 -1.1381 41 1 -0.7386 -13.1470 -1.5473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133960099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:30 Heat of formation + Delta-G solvation = 35.243558 kcal Electronic energy + Delta-G solvation = -22775.298430 eV Core-core repulsion = 19305.111674 eV Total energy + Delta-G solvation = -3470.186756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.45794 -40.93668 -37.96714 -37.43768 -35.87883 -35.62003 -33.25777 -31.63114 -31.11841 -30.34280 -28.64704 -25.64014 -25.09347 -23.63853 -23.39405 -22.82542 -21.51833 -20.53304 -19.40151 -18.84341 -18.36954 -17.18783 -17.00236 -16.71494 -16.39504 -15.95818 -15.60089 -15.29316 -15.08177 -14.86965 -14.83749 -14.75943 -14.57287 -14.43993 -13.60923 -13.10674 -13.06073 -13.05050 -12.68915 -12.57357 -12.55476 -12.24673 -12.09964 -12.00931 -11.87880 -11.82031 -11.54535 -11.33742 -11.00645 -10.85881 -10.32068 -9.83209 -9.08405 -7.98502 -5.30062 0.43730 1.19325 1.29806 1.48164 1.49826 1.50274 1.58706 1.99653 2.56098 3.17244 3.36343 3.41797 3.53055 3.71774 3.89583 3.91321 3.96416 4.02844 4.10053 4.13691 4.17013 4.43472 4.54942 4.56542 4.58577 4.60989 4.91002 4.94846 5.01675 5.08690 5.10741 5.19699 5.22230 5.23223 5.34511 5.45633 5.47590 5.55932 6.22316 6.31831 6.99911 7.28500 7.44110 8.00617 8.22161 9.25285 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.033104 B = 0.002453 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.620958 B =11412.931788 C =11665.917916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.246 4.246 8 H 0.086 0.914 9 N -0.750 5.750 10 C 0.149 3.851 11 C 0.128 3.872 12 N -0.695 5.695 13 C 0.498 3.502 14 O -0.579 6.579 15 C 0.095 3.905 16 N -0.270 5.270 17 N -0.127 5.127 18 N -0.300 5.300 19 C -0.042 4.042 20 C -0.003 4.003 21 C -0.050 4.050 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.033 4.033 25 H 0.252 0.748 26 H 0.373 0.627 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.426 0.574 32 H 0.168 0.832 33 H 0.186 0.814 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.002 -25.856 -9.147 28.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.378 4.378 8 H 0.104 0.896 9 N -0.393 5.393 10 C 0.022 3.978 11 C 0.004 3.996 12 N -0.349 5.349 13 C 0.283 3.717 14 O -0.458 6.458 15 C -0.029 4.029 16 N -0.061 5.061 17 N -0.104 5.104 18 N -0.164 5.164 19 C -0.183 4.183 20 C -0.138 4.138 21 C -0.089 4.089 22 C -0.147 4.147 23 C -0.157 4.157 24 C -0.072 4.072 25 H 0.061 0.939 26 H 0.204 0.796 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.264 0.736 32 H 0.185 0.815 33 H 0.203 0.797 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.324 -25.756 -7.523 27.813 hybrid contribution -0.092 1.524 -0.410 1.581 sum 7.231 -24.232 -7.933 26.503 Atomic orbital electron populations 1.69834 1.06917 1.26305 1.59231 1.25686 0.96402 1.01561 1.03415 0.85063 0.77721 0.78964 0.77527 1.21178 1.22551 1.18918 1.19658 0.91792 0.84760 1.41568 0.89636 1.42454 1.05765 1.01239 1.89829 1.20868 0.93458 0.83743 0.99687 1.21171 0.94898 0.82473 1.01102 1.45492 1.11560 1.03965 1.73858 1.21022 0.87972 0.86447 0.76230 1.90820 1.16272 1.87915 1.50833 1.22278 0.89296 0.79036 1.12253 1.46554 1.31085 1.23780 1.04698 1.78487 1.11816 1.07513 1.12607 1.74707 1.13957 1.13755 1.13997 1.22342 1.02947 1.02151 0.90836 1.22458 1.00515 0.97248 0.93539 1.20476 1.04057 1.00725 0.83611 1.21608 0.96223 0.96715 1.00186 1.21675 0.97831 1.01488 0.94723 1.20113 0.98337 0.96333 0.92397 0.93936 0.79594 0.94275 0.93697 0.92547 0.93373 0.73575 0.81494 0.79673 0.90214 0.87033 0.88199 0.90176 0.92832 0.88143 0.90593 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 3 Si 0.98 44.91 29.55 68.60 2.03 46.93 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.25 -13.23 9.99 84.03 0.84 -12.39 16 8 H 0.09 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.75 -36.80 5.60 -343.46 -1.92 -38.73 16 10 C 0.15 5.19 6.37 86.38 0.55 5.74 16 11 C 0.13 4.00 5.79 86.38 0.50 4.50 16 12 N -0.69 -14.31 5.56 -463.07 -2.57 -16.88 16 13 C 0.50 11.72 7.90 87.66 0.69 12.41 16 14 O -0.58 -21.09 16.43 -3.02 -0.05 -21.14 16 15 C 0.10 1.31 6.72 85.63 0.58 1.89 16 16 N -0.27 -6.33 2.82 -338.76 -0.95 -7.29 16 17 N -0.13 -4.00 13.19 37.02 0.49 -3.51 16 18 N -0.30 -9.70 12.40 -48.99 -0.61 -10.31 16 19 C -0.04 -1.06 7.11 41.75 0.30 -0.76 16 20 C 0.00 -0.07 6.76 41.50 0.28 0.21 16 21 C -0.05 -0.60 5.97 29.94 0.18 -0.42 16 22 C -0.11 -0.91 5.90 30.78 0.18 -0.73 16 23 C -0.12 -1.35 5.90 30.77 0.18 -1.16 16 24 C -0.03 -0.54 6.30 29.96 0.19 -0.35 16 25 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.37 20.07 7.67 -92.70 -0.71 19.35 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.43 4.89 8.47 -92.70 -0.79 4.11 16 32 H 0.17 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.19 0.54 7.71 -2.39 -0.02 0.53 16 34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.11 0.64 7.87 -2.39 -0.02 0.62 16 36 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 38 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -85.53 345.66 1.18 -84.34 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.44 Total: 20.83 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 4.93 Total: 4.98 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -5.29 Total: -135.94 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.05 Total: -21.14 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -85.53 1.18 -84.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133960099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.585 kcal (2) G-P(sol) polarization free energy of solvation -85.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds