Wall clock time and date at job start Tue Mar 31 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 5 5 C 1.42902 * 113.99874 * 270.00076 * 4 2 1 6 6 C 1.50698 * 109.47243 * 180.02562 * 5 4 2 7 7 C 1.38657 * 120.78929 * 269.71936 * 6 5 4 8 8 C 1.38198 * 119.16146 * 179.79725 * 7 6 5 9 9 N 1.31867 * 120.76444 * 0.48907 * 8 7 6 10 10 C 1.31870 * 121.72763 * 359.73800 * 9 8 7 11 11 C 1.38198 * 120.76303 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 13 13 O 1.21280 * 119.99966 * 244.99884 * 12 2 1 14 14 N 1.34774 * 120.00093 * 64.99522 * 12 2 1 15 15 C 1.46500 * 120.00022 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47078 * 180.02562 * 15 14 12 17 17 N 1.46500 * 109.47078 * 179.97438 * 16 15 14 18 18 C 1.36940 * 119.99755 * 179.97438 * 17 16 15 19 19 H 1.07992 * 120.00220 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99597 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99755 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00258 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46760 * 90.00060 * 22 20 18 24 24 H 1.48493 * 109.47334 * 209.99958 * 22 20 18 25 25 H 1.48498 * 109.47064 * 330.00453 * 22 20 18 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.09002 * 109.47082 * 300.00110 * 5 4 2 30 30 H 1.08997 * 109.47374 * 59.99540 * 5 4 2 31 31 H 1.08002 * 120.41827 * 359.97438 * 7 6 5 32 32 H 1.08009 * 119.61982 * 180.20412 * 8 7 6 33 33 H 1.08002 * 119.61566 * 180.02562 * 10 9 8 34 34 H 1.08002 * 120.41809 * 179.97438 * 11 10 9 35 35 H 0.96999 * 119.99866 * 0.02562 * 14 12 2 36 36 H 1.08999 * 109.47229 * 300.00134 * 15 14 12 37 37 H 1.08996 * 109.47573 * 60.00199 * 15 14 12 38 38 H 1.09008 * 109.46996 * 299.99836 * 16 15 14 39 39 H 1.08997 * 109.47507 * 59.99882 * 16 15 14 40 40 H 0.96999 * 120.00112 * 359.97438 * 17 16 15 41 41 H 0.96997 * 120.00020 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7015 -0.6283 3.4610 7 6 1.8150 -1.2045 4.3580 8 6 2.3115 -1.9451 5.4138 9 7 3.6109 -2.0983 5.5782 10 6 4.4830 -1.5611 4.7477 11 6 4.0604 -0.8114 3.6664 12 6 2.0323 -0.7104 -1.2305 13 8 2.6529 -1.7466 -1.1215 14 7 1.7918 -0.1942 -2.4520 15 6 2.2796 -0.8850 -3.6482 16 6 1.8754 -0.0945 -4.8942 17 7 2.3638 -0.7850 -6.0904 18 6 2.1195 -0.2604 -7.3315 19 1 1.5672 0.6625 -7.4285 20 6 2.5827 -0.9145 -8.4649 21 7 2.3474 -0.4105 -9.6579 22 14 3.5387 -2.5106 -8.2971 23 1 2.5956 -3.6575 -8.3238 24 1 4.4990 -2.6331 -9.4231 25 1 4.2811 -2.5100 -7.0111 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 2.9319 0.9513 2.0450 30 1 1.2539 0.6546 2.5588 31 1 0.7498 -1.0784 4.2315 32 1 1.6275 -2.4000 6.1151 33 1 5.5398 -1.7087 4.9146 34 1 4.7796 -0.3735 2.9900 35 1 1.2957 0.6348 -2.5391 36 1 3.3659 -0.9636 -3.6048 37 1 1.8447 -1.8834 -3.6940 38 1 0.7891 -0.0155 -4.9379 39 1 2.3107 0.9038 -4.8483 40 1 2.8602 -1.6138 -6.0033 41 1 2.6714 -0.8674 -10.4499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134024903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:23 Heat of formation + Delta-G solvation = -30.078061 kcal Electronic energy + Delta-G solvation = -22084.305223 eV Core-core repulsion = 18578.993158 eV Total energy + Delta-G solvation = -3505.312065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60246 -39.99674 -38.01776 -35.85965 -34.09903 -33.78280 -31.89047 -31.58736 -31.11424 -28.16958 -27.31260 -24.71804 -23.84680 -23.07536 -22.39053 -21.54532 -20.40753 -18.07363 -17.71935 -17.24226 -16.87825 -16.68843 -16.00052 -15.82691 -15.50083 -15.06015 -14.62325 -14.22319 -14.14918 -14.04169 -13.85929 -13.77386 -13.43869 -13.06223 -12.75421 -12.66483 -12.40089 -11.96195 -11.70566 -11.57276 -11.54640 -10.99341 -10.87681 -10.36346 -10.19040 -10.14314 -9.86523 -9.68590 -9.61426 -9.51819 -9.10190 -8.93630 -7.34141 -5.83258 -3.20968 0.73429 0.76983 2.53808 2.67537 3.35962 3.37340 3.40186 3.44278 3.70853 4.09987 4.24537 4.26398 4.45827 4.54689 4.56787 4.62714 4.68033 4.73870 4.86811 4.92584 5.18631 5.22733 5.26072 5.32896 5.40072 5.40704 5.55410 5.55973 5.61078 5.72951 5.90075 5.91324 6.30109 6.30427 6.51270 6.53347 6.64336 7.44814 7.58976 7.89720 8.16942 8.34699 9.12185 9.84572 10.02623 11.34425 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.002270 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.091586 B =12334.240501 C =12878.717555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.089 0.911 4 O -0.349 6.349 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.152 4.152 8 C 0.095 3.905 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.149 4.149 12 C 0.511 3.489 13 O -0.520 6.520 14 N -0.720 5.720 15 C 0.108 3.892 16 C 0.149 3.851 17 N -0.752 5.752 18 C -0.250 4.250 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.931 5.931 22 Si 0.885 3.115 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.276 1.276 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.364 0.636 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 4.162 30.352 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.106 0.894 4 O -0.267 6.267 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.295 3.705 13 O -0.394 6.394 14 N -0.374 5.374 15 C -0.015 4.015 16 C 0.021 3.979 17 N -0.399 5.399 18 C -0.379 4.379 19 H 0.109 0.891 20 C -0.189 4.189 21 N -0.578 5.578 22 Si 0.715 3.285 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.202 1.202 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.155 0.845 35 H 0.235 0.765 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.196 0.804 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.940 2.859 30.943 31.135 hybrid contribution 0.072 0.064 -0.904 0.909 sum -1.868 2.923 30.039 30.238 Atomic orbital electron populations 1.22246 0.93239 1.04123 1.03295 1.21931 0.95290 0.96330 0.85456 0.89360 1.88138 1.86603 1.33490 1.18436 1.21425 1.00164 0.91657 0.84617 1.19960 0.93711 0.96848 0.94727 1.22085 1.00995 0.98262 0.95795 1.22783 0.91986 0.95321 0.96094 1.67673 1.03407 1.19540 1.28596 1.22799 0.99778 0.93005 0.90437 1.22126 0.95887 0.99811 0.99057 1.20265 0.80272 0.85775 0.84189 1.90744 1.39266 1.23048 1.86370 1.45810 1.58066 1.27954 1.05560 1.21619 0.99802 0.96684 0.83418 1.20727 0.97556 0.94805 0.84793 1.42534 1.67600 1.27682 1.02080 1.18997 1.30455 1.07006 0.81472 0.89081 1.24685 1.00524 0.98674 0.95056 1.69701 1.50701 1.40483 0.96939 0.86540 0.80212 0.84644 0.77117 1.20892 1.21563 1.20168 0.90492 0.90889 0.91227 0.91646 0.91611 0.84574 0.82535 0.82466 0.84487 0.76500 0.91273 0.91233 0.94853 0.94935 0.80357 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.48 37.16 0.35 -0.85 16 2 C 0.07 0.66 3.13 -27.88 -0.09 0.57 16 3 H 0.09 0.56 7.79 -51.93 -0.40 0.15 16 4 O -0.35 -3.89 9.51 -55.09 -0.52 -4.42 16 5 C 0.10 0.73 5.92 36.00 0.21 0.95 16 6 C -0.04 -0.38 5.55 -104.32 -0.58 -0.96 16 7 C -0.15 -1.17 9.82 -39.44 -0.39 -1.56 16 8 C 0.09 0.78 11.18 -17.55 -0.20 0.59 16 9 N -0.48 -4.84 10.36 -13.25 -0.14 -4.98 16 10 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 11 C -0.15 -1.26 9.82 -39.44 -0.39 -1.65 16 12 C 0.51 6.88 7.18 -10.99 -0.08 6.80 16 13 O -0.52 -9.62 16.51 -14.30 -0.24 -9.85 16 14 N -0.72 -8.75 5.52 -60.30 -0.33 -9.08 16 15 C 0.11 1.70 5.79 -4.04 -0.02 1.67 16 16 C 0.15 2.68 6.37 -4.04 -0.03 2.65 16 17 N -0.75 -17.63 5.41 -59.91 -0.32 -17.96 16 18 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 21 N -0.93 -28.96 13.97 55.49 0.78 -28.18 16 22 Si 0.89 22.10 27.74 -169.99 -4.71 17.38 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 26 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 29 H 0.07 0.39 8.05 -51.93 -0.42 -0.02 16 30 H 0.07 0.34 7.83 -51.93 -0.41 -0.07 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.16 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.40 3.54 8.26 -40.82 -0.34 3.20 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.36 8.42 5.53 -40.82 -0.23 8.20 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -36.88 353.69 -7.82 -44.71 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.01 Total: 5.23 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.65 Total: 1.83 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.02 Total: -60.20 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.76 Total: -14.27 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.88 -7.82 -44.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134024903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.627 kcal (2) G-P(sol) polarization free energy of solvation -36.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds