Wall clock time and date at job start Tue Mar 31 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.42906 * 109.46752 * 239.99582 * 2 1 3 5 5 C 1.42899 * 113.99771 * 90.00267 * 4 2 1 6 6 C 1.50695 * 109.47139 * 179.97438 * 5 4 2 7 7 C 1.38650 * 120.78886 * 269.71697 * 6 5 4 8 8 C 1.38203 * 119.16531 * 179.79756 * 7 6 5 9 9 N 1.31875 * 120.75926 * 0.48699 * 8 7 6 10 10 C 1.31868 * 121.72792 * 359.74486 * 9 8 7 11 11 C 1.38203 * 120.76263 * 0.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 13 13 O 1.21279 * 120.00449 * 114.99935 * 12 2 1 14 14 N 1.34776 * 119.99626 * 294.99517 * 12 2 1 15 15 C 1.46508 * 120.00166 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47264 * 179.97438 * 15 14 12 17 17 N 1.46504 * 109.46931 * 179.97438 * 16 15 14 18 18 C 1.36934 * 119.99937 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99791 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99955 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99992 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99995 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46890 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46933 * 120.00351 * 22 20 18 25 25 H 1.48492 * 109.47444 * 240.00447 * 22 20 18 26 26 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 27 27 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 29 29 H 1.09001 * 109.46938 * 299.99659 * 5 4 2 30 30 H 1.08999 * 109.47317 * 59.99592 * 5 4 2 31 31 H 1.08003 * 120.42074 * 0.02562 * 7 6 5 32 32 H 1.07995 * 119.62351 * 180.21025 * 8 7 6 33 33 H 1.08001 * 119.61734 * 180.02562 * 10 9 8 34 34 H 1.07997 * 120.41763 * 179.97438 * 11 10 9 35 35 H 0.97003 * 120.00627 * 0.02562 * 14 12 2 36 36 H 1.09002 * 109.46804 * 300.00607 * 15 14 12 37 37 H 1.09000 * 109.46279 * 59.99959 * 15 14 12 38 38 H 1.08994 * 109.47588 * 300.00712 * 16 15 14 39 39 H 1.09000 * 109.46873 * 60.00765 * 16 15 14 40 40 H 0.96998 * 120.00032 * 0.02562 * 17 16 15 41 41 H 0.97001 * 120.00086 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.2001 0.1828 -2.2941 6 6 2.7013 -0.6284 -3.4610 7 6 4.0604 -0.8067 -3.6698 8 6 4.4829 -1.5605 -4.7484 9 7 3.6106 -2.0985 -5.5783 10 6 2.3112 -1.9460 -5.4134 11 6 1.8147 -1.2092 -4.3548 12 6 2.0324 -0.7104 1.2304 13 8 2.6530 -1.7467 1.1215 14 7 1.7920 -0.1941 2.4519 15 6 2.2799 -0.8850 3.6483 16 6 1.8758 -0.0943 4.8942 17 7 2.3631 -0.7856 6.0905 18 6 2.1197 -0.2605 7.3315 19 1 1.5681 0.6629 7.4284 20 6 2.5819 -0.9152 8.4649 21 7 3.2545 -2.0403 8.3468 22 14 2.2492 -0.1993 10.1580 23 1 1.4783 1.0623 10.0192 24 1 1.4657 -1.1719 10.9614 25 1 3.5387 0.0805 10.8393 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.2538 0.6545 -2.5589 30 1 2.9319 0.9512 -2.0451 31 1 4.7797 -0.3652 -2.9960 32 1 5.5396 -1.7070 -4.9160 33 1 1.6271 -2.4021 -6.1137 34 1 0.7494 -1.0875 -4.2253 35 1 1.2954 0.6345 2.5392 36 1 1.8448 -1.8834 3.6940 37 1 3.3661 -0.9636 3.6046 38 1 2.3111 0.9039 4.8482 39 1 0.7896 -0.0153 4.9380 40 1 2.8589 -1.6147 6.0034 41 1 3.5779 -2.4975 9.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134024912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:25 Heat of formation + Delta-G solvation = -61.014331 kcal Electronic energy + Delta-G solvation = -22017.195491 eV Core-core repulsion = 18510.541929 eV Total energy + Delta-G solvation = -3506.653562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25944 -40.90741 -38.80921 -37.27302 -35.55386 -34.46862 -33.29931 -32.15738 -32.08396 -29.32543 -27.87505 -26.00850 -24.71935 -24.41896 -23.09258 -22.95221 -21.45603 -19.37300 -18.62257 -18.11272 -17.52314 -17.43391 -16.89312 -16.67531 -16.52578 -16.31489 -15.90117 -15.55026 -15.10578 -15.02131 -14.78184 -14.72823 -14.53884 -14.19033 -13.65606 -13.36979 -13.11256 -13.04516 -12.95602 -12.69556 -12.53539 -12.48091 -12.28089 -12.04453 -11.85351 -11.12439 -11.00933 -10.76006 -10.54511 -10.47538 -10.19059 -10.09847 -9.07007 -7.97254 -5.28765 0.12983 0.18927 1.48556 1.50076 1.53398 1.60133 1.79855 2.54983 2.69706 3.08646 3.37312 3.55722 3.59320 3.75394 3.77344 3.94820 4.00784 4.06784 4.11492 4.16962 4.19776 4.21899 4.39660 4.43691 4.57571 4.69186 4.72445 4.82147 4.87678 4.98108 5.01404 5.13136 5.23014 5.33770 5.33920 5.49163 5.74709 5.99915 6.23579 6.53258 6.99203 7.20014 7.29627 8.01789 8.24092 9.26679 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.040561 B = 0.002095 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.144259 B =13360.748498 C =13758.603738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.078 3.922 3 H 0.127 0.873 4 O -0.384 6.384 5 C 0.096 3.904 6 C -0.061 4.061 7 C -0.161 4.161 8 C 0.082 3.918 9 N -0.512 5.512 10 C 0.083 3.917 11 C -0.153 4.153 12 C 0.504 3.496 13 O -0.580 6.580 14 N -0.704 5.704 15 C 0.128 3.872 16 C 0.150 3.850 17 N -0.749 5.749 18 C -0.245 4.245 19 H 0.086 0.914 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.980 3.020 23 H -0.260 1.260 24 H -0.295 1.295 25 H -0.294 1.294 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.174 0.826 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.420 0.580 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.373 0.627 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 10.555 -27.749 30.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 H 0.144 0.856 4 O -0.303 6.303 5 C 0.020 3.980 6 C -0.069 4.069 7 C -0.181 4.181 8 C -0.074 4.074 9 N -0.222 5.222 10 C -0.074 4.074 11 C -0.173 4.173 12 C 0.291 3.709 13 O -0.458 6.458 14 N -0.359 5.359 15 C 0.003 3.997 16 C 0.023 3.977 17 N -0.392 5.392 18 C -0.377 4.377 19 H 0.104 0.896 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.808 3.192 23 H -0.184 1.184 24 H -0.222 1.222 25 H -0.222 1.222 26 H 0.116 0.884 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.165 0.835 32 H 0.191 0.809 33 H 0.196 0.804 34 H 0.178 0.822 35 H 0.258 0.742 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.204 0.796 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.809 9.286 -28.431 30.468 hybrid contribution -0.061 0.432 1.894 1.943 sum -5.870 9.718 -26.537 28.864 Atomic orbital electron populations 1.22266 0.91191 1.03409 1.05528 1.22021 0.96543 0.96873 0.82798 0.85580 1.88099 1.87043 1.35500 1.19632 1.21633 1.02060 0.91215 0.83095 1.20291 0.93920 0.97235 0.95435 1.22348 0.96530 0.99965 0.99208 1.23129 1.00600 0.93089 0.90602 1.67686 1.04437 1.20524 1.29535 1.23238 0.91865 0.95451 0.96821 1.22374 1.02170 0.97507 0.95210 1.21246 0.79001 0.85144 0.85498 1.90724 1.42013 1.25863 1.87222 1.45620 1.57617 1.28257 1.04379 1.21148 0.98633 0.95890 0.84041 1.20858 0.97598 0.94845 0.84402 1.42460 1.67035 1.28021 1.01686 1.19704 1.28335 1.05301 0.84351 0.89644 1.25702 1.01356 0.98074 1.02090 1.69847 1.43790 1.19451 1.29143 0.84980 0.76976 0.77835 0.79362 1.18398 1.22181 1.22156 0.88398 0.93097 0.88793 0.88720 0.90206 0.83525 0.80928 0.80369 0.82243 0.74234 0.93141 0.93046 0.94116 0.94141 0.79565 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.48 71.98 0.68 -1.23 16 2 C 0.08 1.32 3.13 29.85 0.09 1.41 16 3 H 0.13 1.15 7.79 -2.39 -0.02 1.13 16 4 O -0.38 -8.25 9.51 -129.99 -1.24 -9.49 16 5 C 0.10 1.24 5.92 71.23 0.42 1.67 16 6 C -0.06 -1.00 5.55 -19.67 -0.11 -1.11 16 7 C -0.16 -2.76 9.82 22.36 0.22 -2.54 16 8 C 0.08 1.48 11.18 84.68 0.95 2.42 16 9 N -0.51 -10.50 10.36 -195.84 -2.03 -12.53 16 10 C 0.08 1.34 11.18 84.68 0.95 2.29 16 11 C -0.15 -2.22 9.82 22.36 0.22 -2.01 16 12 C 0.50 13.84 7.18 87.66 0.63 14.46 16 13 O -0.58 -22.98 16.51 15.96 0.26 -22.71 16 14 N -0.70 -17.14 5.52 -463.05 -2.55 -19.69 16 15 C 0.13 4.30 5.79 86.38 0.50 4.80 16 16 C 0.15 5.50 6.37 86.38 0.55 6.05 16 17 N -0.75 -37.65 5.60 -343.46 -1.92 -39.58 16 18 C -0.25 -13.40 9.99 84.03 0.84 -12.56 16 19 H 0.09 4.35 7.83 -2.91 -0.02 4.32 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 21 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 22 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H 0.10 0.60 7.87 -2.39 -0.02 0.58 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.74 7.92 -2.39 -0.02 0.72 16 29 H 0.09 0.65 7.83 -2.39 -0.02 0.63 16 30 H 0.08 0.78 8.04 -2.39 -0.02 0.76 16 31 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.42 6.66 8.26 -92.71 -0.77 5.89 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.37 20.48 7.67 -92.71 -0.71 19.77 16 41 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -80.98 356.80 0.80 -80.18 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -0.43 Total: 26.55 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 6.41 Total: 9.56 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -6.23 Total: -131.53 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.97 Total: -32.20 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -80.98 0.80 -80.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134024912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.167 kcal (2) G-P(sol) polarization free energy of solvation -80.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds