Wall clock time and date at job start Tue Mar 31 2020 03:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45204 * 109.47098 * 2 1 4 4 C 1.34813 * 116.99913 * 179.97438 * 3 2 1 5 5 O 1.21544 * 120.00120 * 0.02562 * 4 3 2 6 6 C 1.47008 * 119.99897 * 179.97438 * 4 3 2 7 7 C 1.38483 * 126.89459 * 180.02562 * 6 4 3 8 8 C 1.50699 * 127.32249 * 0.02562 * 7 6 4 9 9 N 1.46900 * 109.46787 * 79.98460 * 8 7 6 10 10 C 1.47477 * 111.00036 * 265.97045 * 9 8 7 11 11 C 1.53514 * 87.93610 * 221.30108 * 10 9 8 12 12 C 1.50693 * 114.34845 * 139.68740 * 11 10 9 13 13 H 1.07998 * 119.99623 * 266.07668 * 12 11 10 14 14 C 1.37874 * 120.00536 * 86.07455 * 12 11 10 15 15 N 1.31514 * 119.99549 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00212 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47125 * 89.99973 * 16 14 12 18 18 H 1.48505 * 109.47112 * 209.99770 * 16 14 12 19 19 H 1.48500 * 109.46988 * 329.99797 * 16 14 12 20 20 C 1.47486 * 110.99947 * 169.99985 * 9 8 7 21 21 C 1.39647 * 105.35662 * 179.97438 * 7 6 4 22 22 N 1.30871 * 107.87862 * 0.22858 * 21 7 6 23 23 N 1.28444 * 110.94462 * 359.60830 * 22 21 7 24 24 C 1.46498 * 125.19730 * 180.18375 * 23 22 21 25 25 H 1.09004 * 109.47080 * 60.00196 * 1 2 3 26 26 H 1.09002 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47253 * 300.00057 * 1 2 3 28 28 H 1.08998 * 109.47253 * 239.99943 * 2 1 3 29 29 H 1.09004 * 109.47080 * 119.99803 * 2 1 3 30 30 H 1.09000 * 109.47328 * 199.98196 * 8 7 6 31 31 H 1.09000 * 109.47434 * 319.98311 * 8 7 6 32 32 H 1.09009 * 113.47857 * 336.06342 * 10 9 8 33 33 H 1.09006 * 113.47836 * 106.53141 * 10 9 8 34 34 H 1.09003 * 114.16580 * 272.37625 * 11 10 9 35 35 H 0.97004 * 119.99906 * 179.97438 * 15 14 12 36 36 H 1.09001 * 113.47723 * 253.47003 * 20 9 8 37 37 H 1.09002 * 113.47530 * 23.87699 * 20 9 8 38 38 H 1.08002 * 126.05767 * 179.97438 * 21 7 6 39 39 H 1.09005 * 109.47630 * 270.24433 * 24 23 22 40 40 H 1.09005 * 109.47242 * 30.24265 * 24 23 22 41 41 H 1.09005 * 109.47440 * 150.24768 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5456 0.0005 5 8 4.0909 0.5817 0.0005 6 6 3.9124 2.9041 0.0000 7 6 5.2535 3.2490 -0.0001 8 6 6.4369 2.3160 -0.0001 9 7 6.6722 1.8237 -1.3640 10 6 5.9946 0.5325 -1.5841 11 6 7.2485 0.0659 -2.3370 12 6 7.6467 -1.3601 -2.0568 13 1 8.3724 -1.5767 -1.2868 14 6 7.0848 -2.3884 -2.7833 15 7 6.2007 -2.1246 -3.7206 16 14 7.5780 -4.1562 -2.4354 17 1 6.6780 -4.7268 -1.4013 18 1 7.4685 -4.9552 -3.6824 19 1 8.9796 -4.1918 -1.9461 20 6 7.9553 1.1017 -1.4514 21 6 5.2763 4.6453 -0.0012 22 7 4.0375 5.0673 0.0031 23 7 3.2160 4.0799 -0.0011 24 6 1.7557 4.1964 -0.0020 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 7.3203 2.8494 0.3510 31 1 6.2351 1.4730 0.6607 32 1 5.8086 -0.0227 -0.6646 33 1 5.1107 0.6083 -2.2176 34 1 7.2488 0.3122 -3.3989 35 1 5.8056 -2.8480 -4.2320 36 1 8.7331 1.6599 -1.9723 37 1 8.2930 0.6994 -0.4963 38 1 6.1596 5.2667 -0.0012 39 1 1.3929 4.2259 1.0255 40 1 1.4645 5.1122 -0.5165 41 1 1.3230 3.3377 -0.5155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136902819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:15 Heat of formation + Delta-G solvation = 38.092384 kcal Electronic energy + Delta-G solvation = -24310.785327 eV Core-core repulsion = 20808.429354 eV Total energy + Delta-G solvation = -3502.355973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.48070 -39.98860 -38.69158 -36.48005 -33.80643 -32.64514 -31.99344 -31.30786 -29.05318 -27.10583 -25.49968 -24.61819 -24.29569 -22.61017 -22.17486 -20.79612 -19.89618 -18.46696 -18.02233 -16.80328 -16.57661 -16.41995 -15.84364 -15.49340 -14.75634 -14.44867 -14.15145 -13.92580 -13.84129 -13.65048 -13.31231 -12.92479 -12.85050 -12.72151 -12.51382 -11.98929 -11.86241 -11.65970 -11.49253 -11.02895 -10.92158 -10.68986 -10.53421 -10.51456 -10.38052 -10.08297 -9.51924 -9.28438 -9.12851 -8.77973 -8.57052 -8.26481 -7.79085 -5.95283 -3.98124 1.18680 2.40759 2.65120 2.67768 3.11515 3.34159 3.40307 3.43870 4.43269 4.48257 4.64641 4.87458 4.90346 5.01883 5.08965 5.13381 5.22852 5.32193 5.36540 5.38855 5.46100 5.61350 5.68982 5.77563 5.81605 5.99663 6.19090 6.27957 6.40689 6.50318 6.58952 6.74217 6.75182 6.86920 6.99541 7.35934 7.41024 7.80161 7.92952 8.04256 8.11666 8.26613 8.51355 9.03918 9.65262 11.14627 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.005354 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.154834 B = 5228.829748 C = 6748.049407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.367 6.367 4 C 0.527 3.473 5 O -0.455 6.455 6 C -0.026 4.026 7 C -0.085 4.085 8 C 0.086 3.914 9 N -0.482 5.482 10 C 0.023 3.977 11 C 0.034 3.966 12 C -0.510 4.510 13 H 0.056 0.944 14 C 0.066 3.934 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.003 4.003 21 C 0.003 3.997 22 N -0.272 5.272 23 N -0.272 5.272 24 C 0.088 3.912 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.188 0.812 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.397 10.165 9.283 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.286 6.286 4 C 0.368 3.632 5 O -0.338 6.338 6 C -0.151 4.151 7 C -0.096 4.096 8 C -0.043 4.043 9 N -0.205 5.205 10 C -0.105 4.105 11 C 0.015 3.985 12 C -0.548 4.548 13 H 0.075 0.925 14 C -0.136 4.136 15 N -0.526 5.526 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.132 4.132 21 C -0.173 4.173 22 N -0.105 5.105 23 N -0.063 5.063 24 C -0.052 4.052 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.205 0.795 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.277 11.274 8.744 18.823 hybrid contribution 0.631 -2.365 0.739 2.557 sum -11.646 8.909 9.483 17.462 Atomic orbital electron populations 1.21803 0.92720 1.03092 1.03109 1.23068 0.94960 0.79648 1.03443 1.86480 1.23927 1.32972 1.85201 1.19706 0.80708 0.87972 0.74803 1.91058 1.59163 1.40551 1.43014 1.20372 0.92078 0.85105 1.17552 1.20764 0.92166 0.94761 1.01894 1.21035 0.92921 0.96206 0.94176 1.68902 1.06998 1.24101 1.20506 1.24190 0.98844 0.87035 1.00463 1.20173 0.90748 0.92530 0.95078 1.21024 1.24263 0.90651 1.18854 0.92539 1.24992 0.94929 0.98904 0.94749 1.69986 1.28270 1.31993 1.22307 0.86653 0.78988 0.85081 0.77612 1.20750 1.21265 1.19841 1.23977 0.92678 0.96277 1.00268 1.23442 0.94322 0.93108 1.06433 1.73109 1.01359 1.16670 1.19378 1.45589 1.07522 1.02143 1.51053 1.22265 0.73051 1.05521 1.04349 0.91535 0.90123 0.91760 0.90422 0.91038 0.90724 0.92246 0.90395 0.93382 0.92250 0.93115 0.92110 0.92845 0.79466 0.89971 0.88765 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.06 0.75 6.20 37.16 0.23 0.98 16 3 O -0.37 -5.05 7.68 -40.80 -0.31 -5.37 16 4 C 0.53 9.03 7.93 34.28 0.27 9.30 16 5 O -0.46 -9.25 10.66 -19.30 -0.21 -9.45 16 6 C -0.03 -0.44 6.96 -82.07 -0.57 -1.01 16 7 C -0.08 -1.45 5.88 -104.01 -0.61 -2.06 16 8 C 0.09 1.57 4.90 -4.98 -0.02 1.55 16 9 N -0.48 -10.45 6.32 -246.07 -1.55 -12.00 16 10 C 0.02 0.57 5.27 -7.55 -0.04 0.53 16 11 C 0.03 0.89 3.76 -91.24 -0.34 0.55 16 12 C -0.51 -14.42 8.83 -34.44 -0.30 -14.72 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 15 N -0.89 -26.48 13.26 55.43 0.74 -25.75 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.00 -0.07 7.25 -7.54 -0.05 -0.13 16 21 C 0.00 0.05 12.00 -17.43 -0.21 -0.16 16 22 N -0.27 -4.04 11.90 30.58 0.36 -3.67 16 23 N -0.27 -3.88 3.75 -63.89 -0.24 -4.12 16 24 C 0.09 0.84 10.81 59.85 0.65 1.49 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 31 H 0.06 1.16 6.50 -51.93 -0.34 0.82 16 32 H 0.08 2.02 5.36 -51.92 -0.28 1.74 16 33 H 0.05 1.29 7.95 -51.93 -0.41 0.88 16 34 H 0.06 1.72 8.11 -51.93 -0.42 1.30 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 1.14 7.87 -51.93 -0.41 0.74 16 38 H 0.19 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.98 6.15 -51.93 -0.32 0.66 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -33.11 339.28 -7.79 -40.90 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.95 Total: 0.45 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.72 Total: -2.74 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.69 Total: -45.54 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.52 Total: -14.82 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.11 -7.79 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136902819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.989 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds