Wall clock time and date at job start Tue Mar 31 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45204 * 109.47098 * 2 1 4 4 C 1.34813 * 116.99913 * 179.97438 * 3 2 1 5 5 O 1.21544 * 120.00120 * 0.02562 * 4 3 2 6 6 C 1.47008 * 119.99897 * 179.97438 * 4 3 2 7 7 C 1.38483 * 126.89459 * 180.02562 * 6 4 3 8 8 C 1.50699 * 127.32249 * 0.02562 * 7 6 4 9 9 N 1.46900 * 109.46787 * 79.98460 * 8 7 6 10 10 C 1.47477 * 111.00036 * 265.97045 * 9 8 7 11 11 C 1.53514 * 87.93610 * 221.30108 * 10 9 8 12 12 C 1.50693 * 114.34845 * 139.68740 * 11 10 9 13 13 H 1.07998 * 119.99623 * 266.07668 * 12 11 10 14 14 C 1.37874 * 120.00536 * 86.07455 * 12 11 10 15 15 N 1.31514 * 119.99549 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00212 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47125 * 89.99973 * 16 14 12 18 18 H 1.48505 * 109.47112 * 209.99770 * 16 14 12 19 19 H 1.48500 * 109.46988 * 329.99797 * 16 14 12 20 20 C 1.47486 * 110.99947 * 169.99985 * 9 8 7 21 21 C 1.39647 * 105.35662 * 179.97438 * 7 6 4 22 22 N 1.30871 * 107.87862 * 0.22858 * 21 7 6 23 23 N 1.28444 * 110.94462 * 359.60830 * 22 21 7 24 24 C 1.46498 * 125.19730 * 180.18375 * 23 22 21 25 25 H 1.09004 * 109.47080 * 60.00196 * 1 2 3 26 26 H 1.09002 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47253 * 300.00057 * 1 2 3 28 28 H 1.08998 * 109.47253 * 239.99943 * 2 1 3 29 29 H 1.09004 * 109.47080 * 119.99803 * 2 1 3 30 30 H 1.09000 * 109.47328 * 199.98196 * 8 7 6 31 31 H 1.09000 * 109.47434 * 319.98311 * 8 7 6 32 32 H 1.09009 * 113.47857 * 336.06342 * 10 9 8 33 33 H 1.09006 * 113.47836 * 106.53141 * 10 9 8 34 34 H 1.09003 * 114.16580 * 272.37625 * 11 10 9 35 35 H 0.97004 * 119.99906 * 179.97438 * 15 14 12 36 36 H 1.09001 * 113.47723 * 253.47003 * 20 9 8 37 37 H 1.09002 * 113.47530 * 23.87699 * 20 9 8 38 38 H 1.08002 * 126.05767 * 179.97438 * 21 7 6 39 39 H 1.09005 * 109.47630 * 270.24433 * 24 23 22 40 40 H 1.09005 * 109.47242 * 30.24265 * 24 23 22 41 41 H 1.09005 * 109.47440 * 150.24768 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5456 0.0005 5 8 4.0909 0.5817 0.0005 6 6 3.9124 2.9041 0.0000 7 6 5.2535 3.2490 -0.0001 8 6 6.4369 2.3160 -0.0001 9 7 6.6722 1.8237 -1.3640 10 6 5.9946 0.5325 -1.5841 11 6 7.2485 0.0659 -2.3370 12 6 7.6467 -1.3601 -2.0568 13 1 8.3724 -1.5767 -1.2868 14 6 7.0848 -2.3884 -2.7833 15 7 6.2007 -2.1246 -3.7206 16 14 7.5780 -4.1562 -2.4354 17 1 6.6780 -4.7268 -1.4013 18 1 7.4685 -4.9552 -3.6824 19 1 8.9796 -4.1918 -1.9461 20 6 7.9553 1.1017 -1.4514 21 6 5.2763 4.6453 -0.0012 22 7 4.0375 5.0673 0.0031 23 7 3.2160 4.0799 -0.0011 24 6 1.7557 4.1964 -0.0020 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 7.3203 2.8494 0.3510 31 1 6.2351 1.4730 0.6607 32 1 5.8086 -0.0227 -0.6646 33 1 5.1107 0.6083 -2.2176 34 1 7.2488 0.3122 -3.3989 35 1 5.8056 -2.8480 -4.2320 36 1 8.7331 1.6599 -1.9723 37 1 8.2930 0.6994 -0.4963 38 1 6.1596 5.2667 -0.0012 39 1 1.3929 4.2259 1.0255 40 1 1.4645 5.1122 -0.5165 41 1 1.3230 3.3377 -0.5155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136902819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:14 Heat of formation + Delta-G solvation = 14.898878 kcal Electronic energy + Delta-G solvation = -24311.791073 eV Core-core repulsion = 20808.429354 eV Total energy + Delta-G solvation = -3503.361719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.65166 -41.27487 -40.50701 -37.77899 -35.15295 -34.45902 -33.23944 -32.41025 -30.58995 -28.45702 -27.08308 -26.49750 -25.60297 -24.12056 -23.38083 -21.97801 -21.22671 -20.40592 -19.21099 -18.56094 -17.95888 -17.83429 -16.93065 -16.75632 -16.58030 -16.28210 -15.72549 -15.23934 -15.09820 -15.00647 -14.61613 -14.25631 -13.95401 -13.68053 -13.59637 -13.52329 -13.22681 -13.03748 -12.92188 -12.84343 -12.55124 -12.39426 -12.13492 -11.88505 -11.76066 -11.61833 -11.37548 -11.20302 -10.83079 -10.45980 -10.27672 -9.90480 -9.57156 -8.13330 -6.23920 -0.09260 1.27729 1.40846 1.41799 1.48913 1.52774 1.60295 1.80786 2.43066 3.16012 3.34971 3.47348 3.59205 3.87262 3.96536 4.03428 4.13005 4.28091 4.32625 4.33878 4.41357 4.46263 4.56481 4.63394 4.71434 4.74894 4.82820 4.88871 4.90378 4.96736 5.01045 5.12627 5.26287 5.35193 5.41061 5.57698 5.64502 5.69665 5.87776 6.32185 6.44795 6.59082 6.84718 6.92999 7.43413 8.97068 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.005354 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.154834 B = 5228.829748 C = 6748.049407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 O -0.352 6.352 4 C 0.527 3.473 5 O -0.497 6.497 6 C -0.045 4.045 7 C -0.111 4.111 8 C 0.091 3.909 9 N -0.481 5.481 10 C 0.048 3.952 11 C 0.012 3.988 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.959 3.041 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.262 1.262 20 C 0.014 3.986 21 C 0.007 3.993 22 N -0.272 5.272 23 N -0.263 5.263 24 C 0.077 3.923 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.013 0.987 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.219 0.781 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.858 11.161 10.657 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 O -0.270 6.270 4 C 0.370 3.630 5 O -0.383 6.383 6 C -0.171 4.171 7 C -0.122 4.122 8 C -0.038 4.038 9 N -0.203 5.203 10 C -0.081 4.081 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.784 3.216 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.115 4.115 21 C -0.168 4.168 22 N -0.106 5.106 23 N -0.054 5.054 24 C -0.061 4.061 25 H 0.090 0.910 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.235 0.765 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.763 12.303 10.130 20.417 hybrid contribution 0.667 -2.596 0.320 2.700 sum -12.095 9.707 10.450 18.701 Atomic orbital electron populations 1.21810 0.89121 1.04541 1.04190 1.23320 0.97656 0.78663 1.02183 1.86500 1.22099 1.33959 1.84419 1.19941 0.81425 0.87908 0.73721 1.91026 1.60273 1.41816 1.45189 1.20458 0.92697 0.85642 1.18264 1.20787 0.91917 0.95739 1.03780 1.20987 0.95031 0.96225 0.91590 1.68802 1.05958 1.22143 1.23388 1.23738 0.96751 0.88738 0.98855 1.20158 0.93278 0.93374 0.93946 1.21365 1.24266 0.91819 1.18929 0.92177 1.25862 0.94819 1.03507 0.94496 1.70128 1.29506 1.33374 1.23430 0.85552 0.79099 0.79439 0.77558 1.20286 1.20749 1.18577 1.23796 0.93061 0.94918 0.99701 1.23889 0.95317 0.92265 1.05302 1.73134 1.01537 1.16577 1.19328 1.46002 1.08971 1.01100 1.49352 1.22662 0.70498 1.06674 1.06291 0.90991 0.88470 0.90072 0.92938 0.91208 0.87637 0.93834 0.91648 0.96789 0.95775 0.93054 0.90151 0.91833 0.76489 0.87584 0.86543 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 10.29 71.98 0.74 -1.35 16 2 C 0.06 1.36 6.20 71.98 0.45 1.80 16 3 O -0.35 -9.72 7.68 -57.25 -0.44 -10.16 16 4 C 0.53 18.53 7.93 70.12 0.56 19.08 16 5 O -0.50 -21.25 10.66 19.69 0.21 -21.04 16 6 C -0.04 -1.49 6.96 40.75 0.28 -1.20 16 7 C -0.11 -3.69 5.88 -19.47 -0.11 -3.80 16 8 C 0.09 3.26 4.90 85.56 0.42 3.68 16 9 N -0.48 -20.94 6.32 -932.42 -5.89 -26.83 16 10 C 0.05 2.50 5.27 83.58 0.44 2.94 16 11 C 0.01 0.63 3.76 -11.20 -0.04 0.59 16 12 C -0.53 -30.37 8.83 25.60 0.23 -30.14 16 13 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 14 C 0.01 0.69 5.46 84.65 0.46 1.15 16 15 N -0.93 -57.06 13.26 21.45 0.28 -56.78 16 16 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 20 C 0.01 0.60 7.25 83.57 0.61 1.21 16 21 C 0.01 0.20 12.00 85.18 1.02 1.22 16 22 N -0.27 -7.45 11.90 -57.15 -0.68 -8.13 16 23 N -0.26 -7.07 3.75 -356.06 -1.34 -8.40 16 24 C 0.08 1.28 10.81 127.77 1.38 2.66 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.11 3.10 8.08 -2.39 -0.02 3.08 16 31 H 0.04 1.72 6.50 -2.39 -0.02 1.70 16 32 H 0.07 3.56 5.36 -2.38 -0.01 3.55 16 33 H 0.01 0.78 7.95 -2.38 -0.02 0.76 16 34 H 0.02 1.47 8.11 -2.39 -0.02 1.45 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 36 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.06 2.66 7.87 -2.39 -0.02 2.64 16 38 H 0.22 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.10 1.77 6.15 -2.38 -0.01 1.75 16 Total: -1.00 -74.10 339.28 1.63 -72.47 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.03 Total: 14.02 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 6.43 Total: -2.15 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -7.62 Total: -100.14 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.23 Total: -31.20 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.10 1.63 -72.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136902819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.367 kcal (2) G-P(sol) polarization free energy of solvation -74.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds