Wall clock time and date at job start Tue Mar 31 2020 02:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47196 * 2 1 4 4 C 1.35434 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32237 * 119.80032 * 0.02562 * 4 3 2 6 6 C 1.31876 * 121.80169 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.40618 * 179.97438 * 6 5 4 8 8 C 1.38353 * 121.18527 * 0.27617 * 6 5 4 9 9 C 1.38342 * 119.45889 * 359.45017 * 8 6 5 10 10 C 1.39983 * 118.34688 * 0.53683 * 9 8 6 11 11 C 1.47518 * 120.59941 * 179.70658 * 10 9 8 12 12 O 1.21586 * 120.00330 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99814 * 0.02562 * 11 10 9 14 14 C 1.46494 * 119.99955 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47164 * 179.97438 * 14 13 11 16 16 N 1.46497 * 109.47165 * 180.02562 * 15 14 13 17 17 C 1.36940 * 119.99982 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99566 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99842 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99378 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00250 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47025 * 90.00111 * 21 19 17 23 23 H 1.48505 * 109.47062 * 210.00271 * 21 19 17 24 24 H 1.48500 * 109.47059 * 330.00160 * 21 19 17 25 25 H 1.09003 * 109.46701 * 300.00024 * 1 2 3 26 26 H 1.09003 * 109.47112 * 59.99403 * 1 2 3 27 27 H 1.08999 * 109.47275 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46976 * 240.00444 * 2 1 3 29 29 H 1.08996 * 109.46757 * 120.00487 * 2 1 3 30 30 H 1.09002 * 109.47152 * 90.00070 * 7 6 5 31 31 H 1.09001 * 109.46980 * 330.00170 * 7 6 5 32 32 H 1.09004 * 109.47113 * 210.00151 * 7 6 5 33 33 H 1.08000 * 120.26943 * 179.72568 * 8 6 5 34 34 H 1.08000 * 120.82733 * 180.23468 * 9 8 6 35 35 H 0.96999 * 119.99622 * 0.02562 * 13 11 10 36 36 H 1.08995 * 109.47638 * 299.99977 * 14 13 11 37 37 H 1.09004 * 109.47233 * 60.00376 * 14 13 11 38 38 H 1.08995 * 109.47022 * 300.00596 * 15 14 13 39 39 H 1.09004 * 109.46541 * 60.00194 * 15 14 13 40 40 H 0.96998 * 120.00255 * 359.97438 * 16 15 14 41 41 H 0.96998 * 119.99210 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1509 0.4731 0.0005 6 6 5.4635 0.6001 0.0005 7 6 6.3264 -0.6355 0.0011 8 6 6.0626 1.8471 0.0063 9 6 5.2715 2.9820 0.0005 10 6 3.8807 2.8228 0.0006 11 6 2.9903 3.9989 0.0011 12 8 1.7838 3.8480 0.0016 13 7 3.5141 5.2407 0.0010 14 6 2.6298 6.4087 0.0010 15 6 3.4720 7.6861 0.0016 16 7 2.5877 8.8540 0.0022 17 6 3.1199 10.1158 0.0022 18 1 4.1916 10.2498 0.0022 19 6 2.2820 11.2225 0.0033 20 7 2.7936 12.4352 0.0038 21 14 0.4285 10.9907 0.0040 22 1 -0.0620 10.9284 1.4042 23 1 -0.2135 12.1328 -0.6951 24 1 0.0875 9.7265 -0.6967 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 6.5345 -0.9338 -1.0264 31 1 5.8048 -1.4427 0.5152 32 1 7.2641 -0.4235 0.5149 33 1 7.1391 1.9339 0.0107 34 1 5.7158 3.9664 0.0010 35 1 4.4766 5.3610 0.0003 36 1 2.0008 6.3882 -0.8889 37 1 2.0008 6.3883 0.8911 38 1 4.1007 7.7063 0.8917 39 1 4.1013 7.7067 -0.8883 40 1 1.6252 8.7337 0.0018 41 1 2.2081 13.2085 0.0042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146214993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:48 Heat of formation + Delta-G solvation = -26.282225 kcal Electronic energy + Delta-G solvation = -22665.263125 eV Core-core repulsion = 19160.115660 eV Total energy + Delta-G solvation = -3505.147465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.18836 -39.15362 -38.40716 -35.81524 -34.08957 -33.38217 -32.53610 -31.37258 -31.17019 -28.83327 -27.59754 -24.32379 -23.77214 -22.87613 -22.54111 -21.48631 -20.53515 -18.67099 -18.02634 -17.32530 -16.99567 -16.58046 -15.50884 -15.36011 -14.92551 -14.68985 -14.62743 -14.29746 -14.13248 -13.81391 -13.74067 -13.26673 -13.24450 -12.89392 -12.72146 -12.60776 -12.54944 -12.20434 -11.70520 -11.57289 -11.49810 -10.94603 -10.93961 -10.84709 -10.28396 -10.19935 -10.15690 -9.71496 -9.61502 -9.03960 -8.90348 -8.66660 -7.30522 -5.80332 -3.17665 0.39625 0.94190 2.74501 2.80185 3.13092 3.38990 3.42964 3.46474 3.59235 3.78113 4.28589 4.51965 4.57737 4.62585 4.77214 4.79945 4.88986 5.01327 5.09637 5.13751 5.15459 5.35505 5.44054 5.45032 5.52069 5.54083 5.61944 5.64200 5.67114 5.69113 5.88893 5.98239 6.06326 6.39237 6.59068 6.63299 7.02827 7.43299 7.58862 7.93179 8.29304 8.37885 9.15584 9.87971 10.06358 11.37518 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.002980 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.504578 B = 9394.667134 C =10644.817641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.268 6.268 4 C 0.380 3.620 5 N -0.548 5.548 6 C 0.191 3.809 7 C -0.108 4.108 8 C -0.221 4.221 9 C -0.005 4.005 10 C -0.214 4.214 11 C 0.561 3.439 12 O -0.517 6.517 13 N -0.721 5.721 14 C 0.110 3.890 15 C 0.148 3.852 16 N -0.752 5.752 17 C -0.248 4.248 18 H 0.091 0.909 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.275 1.275 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.397 0.603 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.364 0.636 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -29.860 -0.026 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.172 6.172 4 C 0.199 3.801 5 N -0.273 5.273 6 C 0.053 3.947 7 C -0.166 4.166 8 C -0.241 4.241 9 C -0.030 4.030 10 C -0.220 4.220 11 C 0.347 3.653 12 O -0.393 6.393 13 N -0.374 5.374 14 C -0.014 4.014 15 C 0.021 3.979 16 N -0.399 5.399 17 C -0.378 4.378 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.579 5.579 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.201 1.201 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.232 0.768 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.196 0.804 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.113 -30.387 -0.024 30.814 hybrid contribution -0.362 0.722 -0.021 0.808 sum 4.751 -29.664 -0.045 30.042 Atomic orbital electron populations 1.21793 0.92759 1.02519 1.03879 1.22688 0.95270 0.81239 1.02192 1.86553 1.15435 1.29831 1.85409 1.19762 0.84603 0.88297 0.87422 1.67291 1.06005 1.32513 1.21526 1.21183 0.88793 0.95388 0.89342 1.20825 0.98020 0.94136 1.03573 1.21734 1.01645 0.92168 1.08544 1.21676 0.91172 1.00032 0.90149 1.20038 0.94243 0.92428 1.15295 1.17724 0.87782 0.82454 0.77342 1.90836 1.14180 1.85767 1.48552 1.45755 1.10485 1.05459 1.75692 1.21598 0.93256 0.83966 1.02585 1.20732 0.92992 0.84948 0.99262 1.42533 1.03988 1.02029 1.91336 1.19007 0.94016 0.81067 1.43719 0.89090 1.24676 0.97603 0.95010 1.01659 1.69706 1.34121 0.96984 1.57135 0.86539 0.86901 0.77140 0.77952 1.20904 1.21599 1.20124 0.91427 0.91435 0.90463 0.91688 0.91687 0.89769 0.90203 0.90034 0.83832 0.83504 0.76797 0.91232 0.91221 0.94888 0.94947 0.80352 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.06 0.65 6.03 37.16 0.22 0.87 16 3 O -0.27 -3.86 8.22 -39.76 -0.33 -4.19 16 4 C 0.38 5.11 7.51 -16.61 -0.12 4.98 16 5 N -0.55 -6.25 9.11 -9.21 -0.08 -6.33 16 6 C 0.19 1.66 6.78 -82.53 -0.56 1.10 16 7 C -0.11 -0.55 10.16 36.01 0.37 -0.18 16 8 C -0.22 -1.68 9.71 -39.50 -0.38 -2.06 16 9 C 0.00 -0.04 9.64 -38.89 -0.37 -0.42 16 10 C -0.21 -2.74 5.90 -104.69 -0.62 -3.36 16 11 C 0.56 8.65 7.77 -12.48 -0.10 8.55 16 12 O -0.52 -9.94 15.19 -16.48 -0.25 -10.19 16 13 N -0.72 -9.87 5.51 -61.36 -0.34 -10.21 16 14 C 0.11 1.81 5.79 -4.04 -0.02 1.79 16 15 C 0.15 2.77 6.37 -4.04 -0.03 2.75 16 16 N -0.75 -17.99 5.41 -59.91 -0.32 -18.31 16 17 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 20 N -0.93 -29.27 13.97 55.49 0.78 -28.50 16 21 Si 0.88 22.33 27.74 -169.99 -4.71 17.61 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.25 8.07 -51.93 -0.42 -0.16 16 33 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.15 0.91 6.51 -52.49 -0.34 0.57 16 35 H 0.40 4.14 6.57 -40.82 -0.27 3.88 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.36 8.57 5.53 -40.82 -0.23 8.35 16 41 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -35.99 348.39 -7.42 -43.41 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.92 Total: 5.51 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.49 Total: 5.95 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: 0.03 Total: -63.35 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.58 Total: -14.38 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.99 -7.42 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146214993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.125 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds