Wall clock time and date at job start Tue Mar 31 2020 02:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47196 * 2 1 4 4 C 1.35434 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32237 * 119.80032 * 0.02562 * 4 3 2 6 6 C 1.31876 * 121.80169 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.40618 * 179.97438 * 6 5 4 8 8 C 1.38353 * 121.18527 * 0.27617 * 6 5 4 9 9 C 1.38342 * 119.45889 * 359.45017 * 8 6 5 10 10 C 1.39983 * 118.34688 * 0.53683 * 9 8 6 11 11 C 1.47518 * 120.59941 * 179.70658 * 10 9 8 12 12 O 1.21586 * 120.00330 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99814 * 0.02562 * 11 10 9 14 14 C 1.46494 * 119.99955 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47164 * 179.97438 * 14 13 11 16 16 N 1.46497 * 109.47165 * 180.02562 * 15 14 13 17 17 C 1.36940 * 119.99982 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99566 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99842 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99378 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00250 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47025 * 90.00111 * 21 19 17 23 23 H 1.48505 * 109.47062 * 210.00271 * 21 19 17 24 24 H 1.48500 * 109.47059 * 330.00160 * 21 19 17 25 25 H 1.09003 * 109.46701 * 300.00024 * 1 2 3 26 26 H 1.09003 * 109.47112 * 59.99403 * 1 2 3 27 27 H 1.08999 * 109.47275 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46976 * 240.00444 * 2 1 3 29 29 H 1.08996 * 109.46757 * 120.00487 * 2 1 3 30 30 H 1.09002 * 109.47152 * 90.00070 * 7 6 5 31 31 H 1.09001 * 109.46980 * 330.00170 * 7 6 5 32 32 H 1.09004 * 109.47113 * 210.00151 * 7 6 5 33 33 H 1.08000 * 120.26943 * 179.72568 * 8 6 5 34 34 H 1.08000 * 120.82733 * 180.23468 * 9 8 6 35 35 H 0.96999 * 119.99622 * 0.02562 * 13 11 10 36 36 H 1.08995 * 109.47638 * 299.99977 * 14 13 11 37 37 H 1.09004 * 109.47233 * 60.00376 * 14 13 11 38 38 H 1.08995 * 109.47022 * 300.00596 * 15 14 13 39 39 H 1.09004 * 109.46541 * 60.00194 * 15 14 13 40 40 H 0.96998 * 120.00255 * 359.97438 * 16 15 14 41 41 H 0.96998 * 119.99210 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1509 0.4731 0.0005 6 6 5.4635 0.6001 0.0005 7 6 6.3264 -0.6355 0.0011 8 6 6.0626 1.8471 0.0063 9 6 5.2715 2.9820 0.0005 10 6 3.8807 2.8228 0.0006 11 6 2.9903 3.9989 0.0011 12 8 1.7838 3.8480 0.0016 13 7 3.5141 5.2407 0.0010 14 6 2.6298 6.4087 0.0010 15 6 3.4720 7.6861 0.0016 16 7 2.5877 8.8540 0.0022 17 6 3.1199 10.1158 0.0022 18 1 4.1916 10.2498 0.0022 19 6 2.2820 11.2225 0.0033 20 7 2.7936 12.4352 0.0038 21 14 0.4285 10.9907 0.0040 22 1 -0.0620 10.9284 1.4042 23 1 -0.2135 12.1328 -0.6951 24 1 0.0875 9.7265 -0.6967 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 6.5345 -0.9338 -1.0264 31 1 5.8048 -1.4427 0.5152 32 1 7.2641 -0.4235 0.5149 33 1 7.1391 1.9339 0.0107 34 1 5.7158 3.9664 0.0010 35 1 4.4766 5.3610 0.0003 36 1 2.0008 6.3882 -0.8889 37 1 2.0008 6.3883 0.8911 38 1 4.1007 7.7063 0.8917 39 1 4.1013 7.7067 -0.8883 40 1 1.6252 8.7337 0.0018 41 1 2.2081 13.2085 0.0042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146214993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:45 Heat of formation + Delta-G solvation = -53.506646 kcal Electronic energy + Delta-G solvation = -22666.443665 eV Core-core repulsion = 19160.115660 eV Total energy + Delta-G solvation = -3506.328005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.03258 -40.30477 -39.23019 -37.44033 -35.60031 -34.32980 -33.44222 -33.15943 -31.89955 -30.12396 -28.63281 -25.63439 -24.75653 -24.02647 -23.33126 -23.10977 -21.63443 -19.95577 -19.43870 -18.58599 -17.90637 -17.45340 -16.85389 -16.63084 -16.28342 -15.73431 -15.51825 -15.49127 -15.35821 -15.06787 -14.99326 -14.70245 -14.09370 -13.97169 -13.54180 -13.43483 -13.32474 -13.22645 -13.01918 -12.85263 -12.70822 -12.61543 -12.47724 -12.08695 -11.83039 -11.70548 -11.26892 -11.03662 -10.98661 -10.67630 -10.20648 -9.48386 -9.36312 -8.05327 -5.40404 -0.40323 0.21441 1.39481 1.40654 1.47871 1.79555 1.93311 2.01000 2.46709 2.72508 3.07856 3.26643 3.61291 3.67837 3.78891 3.86801 3.97987 4.02079 4.10825 4.19362 4.20880 4.32103 4.39160 4.54813 4.68627 4.78337 4.81465 4.88033 4.92094 4.96820 5.01625 5.09403 5.15643 5.17237 5.32263 5.48530 5.72642 6.17786 6.20760 6.46692 6.73340 7.03084 7.17260 7.77861 7.95228 9.15423 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.002980 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.504578 B = 9394.667134 C =10644.817641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.300 6.300 4 C 0.356 3.644 5 N -0.561 5.561 6 C 0.184 3.816 7 C -0.106 4.106 8 C -0.209 4.209 9 C 0.002 3.998 10 C -0.242 4.242 11 C 0.560 3.440 12 O -0.565 6.565 13 N -0.707 5.707 14 C 0.125 3.875 15 C 0.151 3.849 16 N -0.760 5.760 17 C -0.236 4.236 18 H 0.066 0.934 19 C -0.060 4.060 20 N -0.980 5.980 21 Si 0.951 3.049 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.255 1.255 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.185 0.815 34 H 0.176 0.824 35 H 0.415 0.585 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.366 0.634 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 -32.083 -0.047 33.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.205 6.205 4 C 0.176 3.824 5 N -0.287 5.287 6 C 0.047 3.953 7 C -0.163 4.163 8 C -0.228 4.228 9 C -0.024 4.024 10 C -0.248 4.248 11 C 0.348 3.652 12 O -0.445 6.445 13 N -0.361 5.361 14 C 0.000 4.000 15 C 0.025 3.975 16 N -0.406 5.406 17 C -0.367 4.367 18 H 0.084 0.916 19 C -0.252 4.252 20 N -0.630 5.630 21 Si 0.778 3.222 22 H -0.204 1.204 23 H -0.220 1.220 24 H -0.180 1.180 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.127 0.873 33 H 0.202 0.798 34 H 0.193 0.807 35 H 0.253 0.747 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.199 0.801 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.665 -32.667 -0.046 33.339 hybrid contribution -0.619 1.284 -0.013 1.426 sum 6.045 -31.383 -0.058 31.960 Atomic orbital electron populations 1.21816 0.91837 1.04083 1.02747 1.22846 0.96015 0.80216 1.02522 1.86517 1.16584 1.31633 1.85814 1.20021 0.84603 0.89167 0.88569 1.67358 1.07254 1.31889 1.22169 1.21981 0.88236 0.97542 0.87580 1.20960 0.98283 0.92334 1.04701 1.22201 1.03473 0.90966 1.06202 1.22047 0.89530 1.02093 0.88683 1.19959 0.95489 0.91012 1.18370 1.18164 0.87594 0.83277 0.76138 1.90803 1.16337 1.86456 1.50874 1.45519 1.11107 1.04285 1.75200 1.21235 0.93048 0.83984 1.01742 1.20834 0.92664 0.84001 1.00050 1.42569 1.04787 1.01979 1.91260 1.19017 0.93015 0.82945 1.41702 0.91617 1.25466 1.02523 0.94727 1.02437 1.69867 1.35818 0.97932 1.59352 0.85472 0.80932 0.77624 0.78173 1.20402 1.22014 1.17984 0.92504 0.92513 0.87506 0.91270 0.91269 0.88453 0.90561 0.87294 0.79790 0.80670 0.74716 0.92240 0.92118 0.93734 0.93841 0.80095 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.28 71.98 0.74 -1.93 16 2 C 0.06 1.27 6.03 71.98 0.43 1.70 16 3 O -0.30 -9.02 8.22 -66.48 -0.55 -9.56 16 4 C 0.36 9.62 7.51 85.13 0.64 10.26 16 5 N -0.56 -12.25 9.11 -296.05 -2.70 -14.95 16 6 C 0.18 2.70 6.78 42.58 0.29 2.99 16 7 C -0.11 -0.70 10.16 71.24 0.72 0.02 16 8 C -0.21 -2.37 9.71 22.32 0.22 -2.15 16 9 C 0.00 0.03 9.64 22.72 0.22 0.25 16 10 C -0.24 -6.03 5.90 -19.91 -0.12 -6.14 16 11 C 0.56 17.23 7.77 86.69 0.67 17.90 16 12 O -0.57 -22.41 15.19 16.83 0.26 -22.16 16 13 N -0.71 -18.44 5.51 -466.29 -2.57 -21.01 16 14 C 0.12 3.99 5.79 86.38 0.50 4.49 16 15 C 0.15 5.39 6.37 86.38 0.55 5.94 16 16 N -0.76 -35.44 5.41 -343.44 -1.86 -37.29 16 17 C -0.24 -13.35 10.47 84.03 0.88 -12.47 16 18 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 19 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 20 N -0.98 -62.51 13.97 21.65 0.30 -62.21 16 21 Si 0.95 46.04 27.74 68.60 1.90 47.94 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.26 -11.37 6.52 99.48 0.65 -10.72 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 29 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.16 8.07 -2.38 -0.02 0.14 16 33 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 34 H 0.18 1.49 6.51 -2.91 -0.02 1.47 16 35 H 0.41 7.64 6.57 -92.71 -0.61 7.03 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.37 16.68 5.53 -92.71 -0.51 16.16 16 41 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -80.58 348.39 0.88 -79.71 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.13 Total: 21.73 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 6.22 Total: 17.80 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -6.82 Total: -135.46 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.29 Total: -31.72 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Total: -80.58 0.88 -79.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146214993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.198 kcal (2) G-P(sol) polarization free energy of solvation -80.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds