Wall clock time and date at job start Tue Mar 31 2020 02:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46748 * 2 1 4 4 C 1.36933 * 120.00081 * 275.90604 * 3 2 1 5 5 H 1.08007 * 119.99893 * 34.09604 * 4 3 2 6 6 C 1.38810 * 120.00545 * 214.09927 * 4 3 2 7 7 N 1.31627 * 119.99741 * 17.00385 * 6 4 3 8 8 Si 1.86791 * 120.00310 * 197.00443 * 6 4 3 9 9 H 1.48505 * 109.47314 * 89.99836 * 8 6 4 10 10 H 1.48505 * 109.47222 * 209.99875 * 8 6 4 11 11 H 1.48502 * 109.47366 * 329.99720 * 8 6 4 12 12 C 1.46503 * 120.00161 * 95.91308 * 3 2 1 13 13 H 1.08995 * 109.46988 * 177.15588 * 12 3 2 14 14 C 1.53005 * 109.47368 * 57.15460 * 12 3 2 15 15 C 1.53006 * 109.46588 * 297.15730 * 12 3 2 16 16 N 1.46498 * 109.47147 * 304.99841 * 15 12 3 17 17 C 1.34774 * 119.99886 * 180.02562 * 16 15 12 18 18 O 1.21538 * 120.00066 * 359.97438 * 17 16 15 19 19 C 1.47981 * 120.00107 * 180.02562 * 17 16 15 20 20 C 1.39917 * 120.91057 * 359.71667 * 19 17 16 21 21 C 1.38018 * 119.00799 * 179.75116 * 20 19 17 22 22 N 1.31993 * 120.88825 * 0.54166 * 21 20 19 23 23 O 1.41601 * 118.98508 * 179.71522 * 22 21 20 24 24 C 1.31991 * 122.02786 * 359.72877 * 22 21 20 25 25 C 1.38018 * 120.88771 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47524 * 300.00128 * 1 2 3 28 28 H 1.09000 * 109.47314 * 60.00349 * 1 2 3 29 29 H 1.08994 * 109.47188 * 239.99779 * 2 1 3 30 30 H 1.09003 * 109.46699 * 119.99231 * 2 1 3 31 31 H 0.96997 * 120.00111 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46534 * 60.00073 * 14 12 3 33 33 H 1.08993 * 109.46988 * 180.02562 * 14 12 3 34 34 H 1.09000 * 109.46850 * 300.00664 * 14 12 3 35 35 H 1.09001 * 109.47178 * 65.00658 * 15 12 3 36 36 H 1.09000 * 109.46720 * 185.00193 * 15 12 3 37 37 H 0.96997 * 119.99726 * 0.02562 * 16 15 12 38 38 H 1.07995 * 120.49538 * 0.02562 * 20 19 17 39 39 H 1.07999 * 119.55283 * 180.24964 * 21 20 19 40 40 H 1.07996 * 119.55773 * 180.02562 * 24 22 21 41 41 H 1.07999 * 120.49240 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4231 1.8928 -1.9761 6 6 3.1563 2.9876 -1.3518 7 7 4.1989 2.9694 -0.5486 8 14 3.0560 4.2516 -2.7234 9 1 2.3782 5.4740 -2.2216 10 1 4.4265 4.5973 -3.1792 11 1 2.2837 3.6887 -3.8600 12 6 2.3856 2.0284 1.2620 13 1 2.7709 3.0276 1.0592 14 6 3.4622 1.1997 1.9656 15 6 1.1516 2.1302 2.1609 16 7 0.0787 2.8206 1.4411 17 6 -1.1109 3.0265 2.0403 18 8 -1.2936 2.6390 3.1776 19 6 -2.1949 3.7234 1.3130 20 6 -2.0038 4.1818 0.0049 21 6 -3.0434 4.8222 -0.6385 22 7 -4.2004 5.0132 -0.0325 23 8 -5.2375 5.6805 -0.7283 24 6 -4.4202 4.6017 1.2022 25 6 -3.4372 3.9471 1.9165 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 4.9149 3.6126 -0.6687 32 1 4.3412 1.1272 1.3251 33 1 3.7352 1.6809 2.9047 34 1 3.0769 0.2004 2.1683 35 1 0.8191 1.1293 2.4363 36 1 1.4036 2.6899 3.0617 37 1 0.2244 3.1295 0.5332 38 1 -1.0585 4.0326 -0.4954 39 1 -2.9069 5.1760 -1.6497 40 1 -5.3824 4.7788 1.6595 41 1 -3.6239 3.6134 2.9265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151735888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:17 Heat of formation + Delta-G solvation = 44.371033 kcal Electronic energy + Delta-G solvation = -24253.883504 eV Core-core repulsion = 20751.799794 eV Total energy + Delta-G solvation = -3502.083710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.51317 -39.42273 -37.11517 -34.67018 -33.99971 -32.16422 -32.00200 -31.22889 -30.03515 -28.33717 -26.35364 -24.63675 -24.16564 -24.04377 -21.86747 -20.65188 -19.52144 -18.51132 -17.47259 -17.20079 -16.79121 -15.94133 -15.65469 -15.53223 -15.03752 -14.90273 -14.42153 -14.24641 -13.99460 -13.43023 -12.83830 -12.73047 -12.57896 -12.37584 -12.27878 -11.98825 -11.70136 -11.22332 -11.17528 -11.09763 -10.95983 -10.86191 -10.41698 -10.22987 -9.96506 -9.95002 -9.80818 -9.59937 -9.48323 -8.84567 -8.68166 -8.62129 -6.81999 -6.03578 -3.54757 0.03277 0.38996 2.38330 2.50736 3.18126 3.18895 3.28584 3.30837 3.35190 4.16847 4.26962 4.27622 4.33622 4.47199 4.67982 5.10576 5.19567 5.22846 5.26525 5.51875 5.55798 5.71972 5.90566 5.99631 6.08728 6.21932 6.30973 6.38105 6.43193 6.52782 6.54557 6.68627 6.74288 6.78042 6.90189 7.01345 7.30465 7.39944 7.61644 7.75085 8.26544 8.30436 9.00330 9.61216 10.19183 11.02455 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.005532 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.013701 B = 5060.399750 C = 6226.126908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 N -0.583 5.583 4 C -0.270 4.270 5 H 0.065 0.935 6 C 0.014 3.986 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.173 3.827 13 H 0.103 0.897 14 C -0.144 4.144 15 C 0.099 3.901 16 N -0.685 5.685 17 C 0.547 3.453 18 O -0.542 6.542 19 C -0.084 4.084 20 C -0.088 4.088 21 C 0.071 3.929 22 N -0.108 5.108 23 O -0.547 6.547 24 C 0.065 3.935 25 C -0.069 4.069 26 H 0.034 0.966 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.256 0.744 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.412 0.588 38 H 0.173 0.827 39 H 0.188 0.812 40 H 0.187 0.813 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 -0.622 5.056 8.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 N -0.304 5.304 4 C -0.400 4.400 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.212 1.212 10 H -0.216 1.216 11 H -0.202 1.202 12 C 0.065 3.935 13 H 0.121 0.879 14 C -0.204 4.204 15 C -0.026 4.026 16 N -0.335 5.335 17 C 0.331 3.669 18 O -0.421 6.421 19 C -0.095 4.095 20 C -0.107 4.107 21 C -0.074 4.074 22 N 0.213 4.787 23 O -0.604 6.604 24 C -0.080 4.080 25 C -0.089 4.089 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.251 0.749 38 H 0.191 0.809 39 H 0.205 0.795 40 H 0.204 0.796 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.082 -0.620 5.620 9.063 hybrid contribution 0.037 0.862 -1.303 1.563 sum -7.045 0.243 4.317 8.266 Atomic orbital electron populations 1.22428 1.00076 0.99169 1.01225 1.20789 0.91586 0.87478 0.98945 1.43900 1.75965 1.08290 1.02255 1.19103 1.08126 1.18956 0.93796 0.91693 1.25208 0.94425 1.01344 0.97724 1.69994 1.07182 1.36133 1.39596 0.86439 0.77326 0.81743 0.82150 1.21199 1.21632 1.20220 1.20554 0.88921 0.99666 0.84347 0.87880 1.21997 1.01013 0.98154 0.99197 1.22340 0.88844 0.95849 0.95546 1.45932 1.11854 1.56697 1.19044 1.17889 0.82541 0.80294 0.86136 1.90774 1.81629 1.51940 1.17755 1.20811 0.95746 0.98423 0.94535 1.22225 1.00130 0.94485 0.93876 1.22644 0.84378 0.98979 1.01402 1.43319 1.09804 1.18201 1.07330 1.97660 1.31418 1.63905 1.67372 1.22634 1.02344 0.97646 0.85394 1.21948 0.90482 0.94659 1.01770 0.94683 0.93322 0.93434 0.93979 0.94358 0.93361 0.90503 0.94590 0.94878 0.92263 0.92395 0.74938 0.80945 0.79466 0.79639 0.80834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.95 37.16 0.37 -2.34 16 2 C 0.14 2.51 5.75 -4.04 -0.02 2.49 16 3 N -0.58 -11.66 1.88 -165.66 -0.31 -11.97 16 4 C -0.27 -6.02 9.07 -15.06 -0.14 -6.16 16 5 H 0.07 1.45 7.89 -52.48 -0.41 1.04 16 6 C 0.01 0.32 4.86 -17.43 -0.08 0.24 16 7 N -0.89 -21.86 10.90 55.49 0.60 -21.25 16 8 Si 0.89 18.61 29.59 -169.99 -5.03 13.58 16 9 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 12 C 0.17 3.27 1.95 -67.92 -0.13 3.14 16 13 H 0.10 2.25 5.94 -51.93 -0.31 1.94 16 14 C -0.14 -2.64 9.05 37.16 0.34 -2.31 16 15 C 0.10 1.64 4.36 -4.04 -0.02 1.62 16 16 N -0.68 -10.33 4.24 -61.20 -0.26 -10.59 16 17 C 0.55 7.89 7.74 -12.27 -0.10 7.79 16 18 O -0.54 -9.21 16.44 5.33 0.09 -9.12 16 19 C -0.08 -0.97 5.91 -104.65 -0.62 -1.59 16 20 C -0.09 -0.92 9.61 -39.03 -0.38 -1.30 16 21 C 0.07 0.81 10.67 -17.56 -0.19 0.63 16 22 N -0.11 -1.52 3.58 -13.29 -0.05 -1.57 16 23 O -0.55 -11.00 20.04 -11.47 -0.23 -11.23 16 24 C 0.07 0.69 10.67 -17.56 -0.19 0.50 16 25 C -0.07 -0.68 9.68 -39.04 -0.38 -1.06 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.78 5.32 -51.93 -0.28 0.51 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.04 0.67 6.29 -51.93 -0.33 0.34 16 31 H 0.26 6.27 8.31 -40.82 -0.34 5.93 16 32 H 0.08 1.63 7.69 -51.93 -0.40 1.23 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.56 6.56 -51.93 -0.34 0.22 16 35 H 0.06 1.01 6.98 -51.93 -0.36 0.64 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.41 6.21 5.87 -40.82 -0.24 5.97 16 38 H 0.17 1.63 6.53 -52.49 -0.34 1.29 16 39 H 0.19 1.81 8.06 -52.49 -0.42 1.38 16 40 H 0.19 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.17 1.41 7.74 -52.49 -0.41 1.00 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -30.92 339.16 -7.11 -38.03 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.51 Total: 7.34 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.53 Total: 1.67 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.01 Total: -45.39 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.14 Total: -20.35 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.92 -7.11 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151735888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.405 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds