Wall clock time and date at job start Tue Mar 31 2020 02:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46748 * 2 1 4 4 C 1.36933 * 120.00081 * 275.90604 * 3 2 1 5 5 H 1.08007 * 119.99893 * 34.09604 * 4 3 2 6 6 C 1.38810 * 120.00545 * 214.09927 * 4 3 2 7 7 N 1.31627 * 119.99741 * 17.00385 * 6 4 3 8 8 Si 1.86791 * 120.00310 * 197.00443 * 6 4 3 9 9 H 1.48505 * 109.47314 * 89.99836 * 8 6 4 10 10 H 1.48505 * 109.47222 * 209.99875 * 8 6 4 11 11 H 1.48502 * 109.47366 * 329.99720 * 8 6 4 12 12 C 1.46503 * 120.00161 * 95.91308 * 3 2 1 13 13 H 1.08995 * 109.46988 * 177.15588 * 12 3 2 14 14 C 1.53005 * 109.47368 * 57.15460 * 12 3 2 15 15 C 1.53006 * 109.46588 * 297.15730 * 12 3 2 16 16 N 1.46498 * 109.47147 * 304.99841 * 15 12 3 17 17 C 1.34774 * 119.99886 * 180.02562 * 16 15 12 18 18 O 1.21538 * 120.00066 * 359.97438 * 17 16 15 19 19 C 1.47981 * 120.00107 * 180.02562 * 17 16 15 20 20 C 1.39917 * 120.91057 * 359.71667 * 19 17 16 21 21 C 1.38018 * 119.00799 * 179.75116 * 20 19 17 22 22 N 1.31993 * 120.88825 * 0.54166 * 21 20 19 23 23 O 1.41601 * 118.98508 * 179.71522 * 22 21 20 24 24 C 1.31991 * 122.02786 * 359.72877 * 22 21 20 25 25 C 1.38018 * 120.88771 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47524 * 300.00128 * 1 2 3 28 28 H 1.09000 * 109.47314 * 60.00349 * 1 2 3 29 29 H 1.08994 * 109.47188 * 239.99779 * 2 1 3 30 30 H 1.09003 * 109.46699 * 119.99231 * 2 1 3 31 31 H 0.96997 * 120.00111 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46534 * 60.00073 * 14 12 3 33 33 H 1.08993 * 109.46988 * 180.02562 * 14 12 3 34 34 H 1.09000 * 109.46850 * 300.00664 * 14 12 3 35 35 H 1.09001 * 109.47178 * 65.00658 * 15 12 3 36 36 H 1.09000 * 109.46720 * 185.00193 * 15 12 3 37 37 H 0.96997 * 119.99726 * 0.02562 * 16 15 12 38 38 H 1.07995 * 120.49538 * 0.02562 * 20 19 17 39 39 H 1.07999 * 119.55283 * 180.24964 * 21 20 19 40 40 H 1.07996 * 119.55773 * 180.02562 * 24 22 21 41 41 H 1.07999 * 120.49240 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4231 1.8928 -1.9761 6 6 3.1563 2.9876 -1.3518 7 7 4.1989 2.9694 -0.5486 8 14 3.0560 4.2516 -2.7234 9 1 2.3782 5.4740 -2.2216 10 1 4.4265 4.5973 -3.1792 11 1 2.2837 3.6887 -3.8600 12 6 2.3856 2.0284 1.2620 13 1 2.7709 3.0276 1.0592 14 6 3.4622 1.1997 1.9656 15 6 1.1516 2.1302 2.1609 16 7 0.0787 2.8206 1.4411 17 6 -1.1109 3.0265 2.0403 18 8 -1.2936 2.6390 3.1776 19 6 -2.1949 3.7234 1.3130 20 6 -2.0038 4.1818 0.0049 21 6 -3.0434 4.8222 -0.6385 22 7 -4.2004 5.0132 -0.0325 23 8 -5.2375 5.6805 -0.7283 24 6 -4.4202 4.6017 1.2022 25 6 -3.4372 3.9471 1.9165 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 4.9149 3.6126 -0.6687 32 1 4.3412 1.1272 1.3251 33 1 3.7352 1.6809 2.9047 34 1 3.0769 0.2004 2.1683 35 1 0.8191 1.1293 2.4363 36 1 1.4036 2.6899 3.0617 37 1 0.2244 3.1295 0.5332 38 1 -1.0585 4.0326 -0.4954 39 1 -2.9069 5.1760 -1.6497 40 1 -5.3824 4.7788 1.6595 41 1 -3.6239 3.6134 2.9265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151735888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:16 Heat of formation + Delta-G solvation = 25.702480 kcal Electronic energy + Delta-G solvation = -24254.693033 eV Core-core repulsion = 20751.799794 eV Total energy + Delta-G solvation = -3502.893239 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48195 -40.63126 -38.59278 -35.73175 -35.30990 -33.72267 -33.07253 -32.57781 -31.25541 -29.90200 -27.61810 -25.77688 -25.59616 -25.15951 -23.30048 -21.77398 -21.01946 -19.62782 -18.65421 -18.45895 -17.94780 -16.96693 -16.76233 -16.68791 -16.48059 -16.30247 -15.65641 -15.46831 -15.21711 -14.78526 -14.27384 -13.98726 -13.80029 -13.67596 -13.49065 -13.18163 -13.15120 -12.75806 -12.70251 -12.52243 -12.37360 -12.21444 -12.01122 -11.82263 -11.32741 -11.19256 -11.13219 -10.79941 -10.79836 -10.40365 -10.13455 -9.91915 -8.48744 -7.79094 -5.30739 -0.93712 -0.44675 1.42143 1.48781 1.52380 1.59904 1.63520 2.04563 2.33421 2.57365 3.22529 3.35544 3.42399 3.46285 3.49818 3.69651 3.81932 4.22123 4.33527 4.42173 4.50095 4.60363 4.65043 4.71041 4.74047 4.84291 4.92398 4.95473 5.00959 5.11162 5.27733 5.37328 5.42576 5.61474 5.67185 5.75046 5.77201 5.79754 5.88994 6.51230 6.56979 7.09296 7.28247 7.96011 8.48897 9.24200 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.005532 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.013701 B = 5060.399750 C = 6226.126908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.591 5.591 4 C -0.260 4.260 5 H 0.066 0.934 6 C -0.028 4.028 7 N -0.914 5.914 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.310 1.310 11 H -0.273 1.273 12 C 0.177 3.823 13 H 0.075 0.925 14 C -0.137 4.137 15 C 0.113 3.887 16 N -0.686 5.686 17 C 0.553 3.447 18 O -0.565 6.565 19 C -0.084 4.084 20 C -0.076 4.076 21 C 0.077 3.923 22 N -0.130 5.130 23 O -0.613 6.613 24 C 0.079 3.921 25 C -0.052 4.052 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.028 0.972 30 H 0.045 0.955 31 H 0.248 0.752 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.413 0.587 38 H 0.185 0.815 39 H 0.201 0.799 40 H 0.210 0.790 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 -1.118 5.787 9.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.313 5.313 4 C -0.390 4.390 5 H 0.084 0.916 6 C -0.226 4.226 7 N -0.558 5.558 8 Si 0.774 3.226 9 H -0.204 1.204 10 H -0.238 1.238 11 H -0.198 1.198 12 C 0.070 3.930 13 H 0.093 0.907 14 C -0.196 4.196 15 C -0.013 4.013 16 N -0.336 5.336 17 C 0.339 3.661 18 O -0.445 6.445 19 C -0.095 4.095 20 C -0.095 4.095 21 C -0.068 4.068 22 N 0.189 4.811 23 O -0.666 6.666 24 C -0.066 4.066 25 C -0.071 4.071 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.252 0.748 38 H 0.202 0.798 39 H 0.218 0.782 40 H 0.227 0.773 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.241 -1.112 6.334 10.453 hybrid contribution 0.482 0.884 -1.440 1.757 sum -7.759 -0.228 4.894 9.176 Atomic orbital electron populations 1.22245 0.97933 1.00318 1.00965 1.20856 0.93106 0.86334 0.98602 1.44033 1.76057 1.09092 1.02083 1.19273 1.07236 1.18206 0.94323 0.91636 1.25703 0.94466 1.03047 0.99385 1.70129 1.07783 1.36721 1.41170 0.85634 0.76034 0.80462 0.80424 1.20361 1.23760 1.19776 1.20413 0.90023 0.98131 0.84419 0.90690 1.21879 0.99556 0.99025 0.99141 1.22034 0.88107 0.96158 0.94996 1.45880 1.11962 1.56737 1.19018 1.18092 0.82529 0.79703 0.85788 1.90771 1.82011 1.52943 1.18819 1.20702 0.95537 0.98478 0.94817 1.22251 1.00139 0.93720 0.93388 1.22913 0.83696 0.98138 1.02095 1.43401 1.09704 1.19601 1.08376 1.97632 1.33429 1.66795 1.68780 1.23083 1.03465 0.95885 0.84216 1.22140 0.89236 0.93390 1.02331 0.92864 0.93346 0.93783 0.95370 0.93702 0.94308 0.93798 0.92962 0.93629 0.92217 0.91972 0.74848 0.79774 0.78204 0.77339 0.78571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.55 9.95 71.98 0.72 -3.83 16 2 C 0.14 4.74 5.75 86.38 0.50 5.23 16 3 N -0.59 -23.03 1.88 -678.02 -1.28 -24.30 16 4 C -0.26 -11.34 9.07 84.03 0.76 -10.58 16 5 H 0.07 2.83 7.89 -2.91 -0.02 2.81 16 6 C -0.03 -1.30 4.86 84.86 0.41 -0.89 16 7 N -0.91 -45.60 10.90 21.65 0.24 -45.37 16 8 Si 0.94 38.05 29.59 68.60 2.03 40.08 16 9 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.31 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 12 C 0.18 6.57 1.95 44.99 0.09 6.66 16 13 H 0.08 3.27 5.94 -2.39 -0.01 3.25 16 14 C -0.14 -4.91 9.05 71.98 0.65 -4.26 16 15 C 0.11 3.51 4.36 86.38 0.38 3.89 16 16 N -0.69 -19.21 4.24 -465.84 -1.97 -21.18 16 17 C 0.55 14.46 7.74 86.83 0.67 15.13 16 18 O -0.56 -17.63 16.44 -3.83 -0.06 -17.70 16 19 C -0.08 -1.70 5.91 -19.88 -0.12 -1.82 16 20 C -0.08 -1.39 9.61 22.62 0.22 -1.18 16 21 C 0.08 1.61 10.67 84.62 0.90 2.52 16 22 N -0.13 -3.48 3.58 -195.97 -0.70 -4.18 16 23 O -0.61 -24.74 20.04 -38.79 -0.78 -25.52 16 24 C 0.08 1.47 10.67 84.62 0.90 2.38 16 25 C -0.05 -0.85 9.68 22.62 0.22 -0.63 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.42 5.32 -2.38 -0.01 1.41 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 1.04 8.09 -2.39 -0.02 1.03 16 30 H 0.04 1.49 6.29 -2.39 -0.02 1.47 16 31 H 0.25 12.38 8.31 -92.71 -0.77 11.61 16 32 H 0.04 1.86 7.69 -2.39 -0.02 1.84 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.04 1.48 6.56 -2.39 -0.02 1.47 16 35 H 0.06 1.88 6.98 -2.39 -0.02 1.86 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.41 11.59 5.87 -92.71 -0.54 11.04 16 38 H 0.19 2.99 6.53 -2.91 -0.02 2.97 16 39 H 0.20 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.21 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.20 2.40 7.74 -2.91 -0.02 2.38 16 Total: -1.00 -66.89 339.16 4.28 -62.61 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.50 Total: 22.95 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 6.30 Total: 12.62 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -3.71 Total: -95.03 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.84 Total: -43.22 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -66.89 4.28 -62.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151735888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.310 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds