Wall clock time and date at job start Tue Mar 31 2020 03:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28913 * 109.73897 * 179.89489 * 3 2 1 5 5 C 1.29827 * 109.47763 * 0.43469 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46253 * 128.85115 * 359.85137 * 6 2 1 8 8 C 1.53320 * 108.73155 * 197.09490 * 7 6 2 9 9 H 1.08996 * 109.45075 * 69.71652 * 8 7 6 10 10 C 1.50700 * 109.44939 * 189.67533 * 8 7 6 11 11 O 1.21280 * 120.00444 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99791 * 180.02562 * 10 8 7 13 13 C 1.46498 * 120.00067 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47032 * 179.97438 * 13 12 10 15 15 N 1.46498 * 109.47032 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99995 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99791 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00103 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99819 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00160 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47391 * 89.99871 * 20 18 16 22 22 H 1.48503 * 109.47485 * 210.00432 * 20 18 16 23 23 H 1.48507 * 109.47058 * 329.99951 * 20 18 16 24 24 C 1.53137 * 109.57988 * 309.70674 * 8 7 6 25 25 C 1.50809 * 128.52278 * 179.62058 * 5 4 3 26 26 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 29 29 H 1.09011 * 109.59116 * 316.86612 * 7 6 2 30 30 H 1.09004 * 109.59791 * 77.16291 * 7 6 2 31 31 H 0.97006 * 119.99815 * 359.97438 * 12 10 8 32 32 H 1.08990 * 109.47229 * 299.99374 * 13 12 10 33 33 H 1.09002 * 109.47004 * 59.99796 * 13 12 10 34 34 H 1.09001 * 109.47268 * 299.99658 * 14 13 12 35 35 H 1.08993 * 109.47230 * 59.99997 * 14 13 12 36 36 H 0.97000 * 120.00578 * 0.02562 * 15 14 13 37 37 H 0.97004 * 119.99803 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.50012 * 189.38579 * 24 8 7 39 39 H 1.09004 * 109.49857 * 309.45555 * 24 8 7 40 40 H 1.09001 * 109.72849 * 76.27344 * 25 5 4 41 41 H 1.08993 * 109.76752 * 315.61183 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 0.0022 5 6 3.5815 -0.6156 -0.0056 6 7 2.3075 -1.0833 -0.0059 7 6 1.9367 -2.4980 -0.0106 8 6 3.1552 -3.3278 0.4104 9 1 3.3629 -3.1574 1.4668 10 6 2.8690 -4.7900 0.1845 11 8 1.7979 -5.1355 -0.2674 12 7 3.8029 -5.7139 0.4857 13 6 3.5244 -7.1354 0.2667 14 6 4.7403 -7.9638 0.6866 15 7 4.4616 -9.3854 0.4681 16 6 5.4105 -10.3241 0.7743 17 1 6.3644 -10.0163 1.1764 18 6 5.1462 -11.6711 0.5677 19 7 3.9838 -12.0460 0.0772 20 14 6.4403 -12.9516 0.9860 21 1 6.2671 -13.3886 2.3946 22 1 6.2899 -14.1208 0.0829 23 1 7.7929 -12.3633 0.8130 24 6 4.3717 -2.9118 -0.4216 25 6 4.8051 -1.4971 -0.0143 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 1.1205 -2.6643 0.6926 30 1 1.6212 -2.7899 -1.0123 31 1 4.6595 -5.4375 0.8476 32 1 2.6598 -7.4319 0.8603 33 1 3.3160 -7.3062 -0.7895 34 1 5.6048 -7.6672 0.0926 35 1 4.9491 -7.7931 1.7426 36 1 3.6050 -9.6618 0.1066 37 1 3.7991 -12.9873 -0.0668 38 1 5.1904 -3.6088 -0.2427 39 1 4.1096 -2.9221 -1.4796 40 1 5.2489 -1.5205 0.9810 41 1 5.5306 -1.1136 -0.7317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152090588.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:17 Heat of formation + Delta-G solvation = 18.288424 kcal Electronic energy + Delta-G solvation = -22788.274006 eV Core-core repulsion = 19317.352021 eV Total energy + Delta-G solvation = -3470.921986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -44.37928 -41.16930 -38.01830 -37.23826 -35.61552 -35.08378 -33.27910 -32.53336 -31.45089 -29.44971 -28.34261 -26.35180 -25.17708 -24.23684 -23.08207 -22.43290 -21.68191 -20.51052 -19.32171 -18.62019 -17.65700 -17.25268 -17.03449 -16.74537 -16.49851 -16.04182 -15.57200 -15.34465 -15.10951 -15.07147 -14.82563 -14.67715 -14.48143 -13.94164 -13.50872 -13.27482 -13.19102 -13.06385 -13.02696 -12.67163 -12.64185 -12.49177 -12.25177 -12.08840 -12.04353 -11.85747 -11.38485 -11.16625 -10.99076 -10.97868 -10.17223 -10.03466 -9.05127 -7.96619 -5.27332 0.78503 1.33532 1.48212 1.49835 1.51253 1.59646 1.76347 2.05531 2.57973 3.04718 3.24236 3.36894 3.38305 3.53575 3.56785 3.88591 3.98388 4.02565 4.11017 4.21306 4.24573 4.26735 4.32738 4.55892 4.61452 4.62171 4.66519 4.83042 4.84340 4.96039 4.99065 5.03560 5.06276 5.16381 5.22756 5.35005 5.50308 5.86776 6.24792 6.45771 7.13614 7.31242 7.66479 8.04193 8.25369 9.26985 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.042885 B = 0.002396 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.753913 B =11684.946109 C =12228.873005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.347 5.347 4 N -0.336 5.336 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.123 3.877 8 C -0.109 4.109 9 H 0.136 0.864 10 C 0.526 3.474 11 O -0.579 6.579 12 N -0.703 5.703 13 C 0.128 3.872 14 C 0.147 3.853 15 N -0.748 5.748 16 C -0.245 4.245 17 H 0.084 0.916 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.976 3.024 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.265 1.265 24 C -0.114 4.114 25 C -0.027 4.027 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.420 0.580 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.038 0.962 36 H 0.374 0.626 37 H 0.252 0.748 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 22.662 1.490 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.187 5.187 4 N -0.175 5.175 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.131 4.131 9 H 0.154 0.846 10 C 0.312 3.688 11 O -0.458 6.458 12 N -0.356 5.356 13 C 0.003 3.997 14 C 0.020 3.980 15 N -0.392 5.392 16 C -0.377 4.377 17 H 0.102 0.898 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.805 3.195 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.190 1.190 24 C -0.152 4.152 25 C -0.066 4.066 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.258 0.742 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.205 0.795 37 H 0.060 0.940 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.733 23.812 1.234 23.907 hybrid contribution -0.096 -2.193 0.059 2.196 sum -1.830 21.619 1.293 21.735 Atomic orbital electron populations 1.20426 0.81070 1.05708 1.05431 1.25371 0.98585 0.82352 1.02609 1.74388 0.96737 1.25501 1.22052 1.73936 1.12763 1.09981 1.20787 1.25441 0.88485 0.92275 1.03292 1.46113 1.06753 1.08834 1.54326 1.21839 0.98365 0.74346 1.05386 1.21550 0.96581 0.89773 1.05172 0.84587 1.20477 0.83443 0.88014 0.76846 1.90751 1.25972 1.82793 1.46326 1.45651 1.19162 1.05557 1.65203 1.21163 0.97954 0.80006 1.00605 1.20879 0.95110 0.83342 0.98639 1.42437 1.17401 1.01359 1.77964 1.19640 0.96189 0.87529 1.34321 0.89833 1.25642 0.99299 0.99430 1.02607 1.69826 1.24216 1.15637 1.52441 0.85099 0.78894 0.78461 0.77035 1.21396 1.22496 1.18991 1.21777 0.96828 0.96733 0.99853 1.20437 0.89748 0.90040 1.06380 0.87965 0.88671 0.88126 0.86886 0.88481 0.74247 0.92687 0.92599 0.94222 0.94411 0.79469 0.93962 0.86200 0.90870 0.86006 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.29 71.24 0.73 -0.01 16 2 C 0.18 3.60 8.07 138.14 1.11 4.71 16 3 N -0.35 -9.50 12.23 -50.46 -0.62 -10.12 16 4 N -0.34 -9.07 12.21 -50.27 -0.61 -9.69 16 5 C 0.17 3.33 7.75 138.14 1.07 4.40 16 6 N -0.47 -8.20 3.11 -504.64 -1.57 -9.77 16 7 C 0.12 1.68 5.46 86.53 0.47 2.15 16 8 C -0.11 -1.22 2.54 -11.39 -0.03 -1.25 16 9 H 0.14 0.98 8.12 -2.39 -0.02 0.96 16 10 C 0.53 10.09 7.15 87.66 0.63 10.71 16 11 O -0.58 -16.44 15.83 -3.03 -0.05 -16.49 16 12 N -0.70 -13.11 5.38 -463.07 -2.49 -15.61 16 13 C 0.13 3.66 5.79 86.38 0.50 4.16 16 14 C 0.15 4.93 6.37 86.38 0.55 5.49 16 15 N -0.75 -35.67 5.60 -343.45 -1.92 -37.60 16 16 C -0.25 -12.94 9.99 84.03 0.84 -12.10 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 19 N -0.97 -58.22 13.06 21.65 0.28 -57.94 16 20 Si 0.98 44.31 29.55 68.60 2.03 46.34 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 24 C -0.11 -0.93 5.22 30.80 0.16 -0.77 16 25 C -0.03 -0.26 6.34 30.04 0.19 -0.07 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 0.75 8.04 -2.39 -0.02 0.73 16 28 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.10 1.50 7.80 -2.39 -0.02 1.48 16 31 H 0.42 4.81 7.80 -92.70 -0.72 4.09 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.37 19.42 7.67 -92.71 -0.71 18.71 16 37 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.12 0.45 7.32 -2.39 -0.02 0.43 16 39 H 0.07 0.77 8.12 -2.38 -0.02 0.76 16 40 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -78.53 343.04 1.36 -77.17 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.38 Total: 20.11 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 6.70 Total: 13.59 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -6.93 Total: -140.72 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.05 Total: -16.49 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -78.53 1.36 -77.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152090588.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.459 kcal (2) G-P(sol) polarization free energy of solvation -78.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds