Wall clock time and date at job start Tue Mar 31 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30838 * 126.46740 * 2 1 4 4 N 1.28906 * 109.73706 * 179.97438 * 3 2 1 5 5 C 1.29831 * 109.48380 * 359.97438 * 4 3 2 6 6 N 1.34695 * 126.46140 * 179.97438 * 2 1 3 7 7 C 1.46260 * 128.84996 * 0.39149 * 6 2 1 8 8 C 1.53197 * 108.79142 * 162.97860 * 7 6 2 9 9 H 1.08993 * 109.29722 * 290.04689 * 8 7 6 10 10 C 1.50703 * 109.49198 * 170.16208 * 8 7 6 11 11 O 1.21279 * 120.00137 * 359.74293 * 10 8 7 12 12 N 1.34779 * 120.00271 * 179.73757 * 10 8 7 13 13 C 1.46499 * 120.00282 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47221 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.47221 * 179.97438 * 14 13 12 16 16 C 1.36943 * 119.99811 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00323 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99488 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00285 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99670 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47235 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47226 * 119.99800 * 20 18 16 23 23 H 1.48505 * 109.47276 * 239.99795 * 20 18 16 24 24 C 1.53137 * 109.68359 * 50.04604 * 8 7 6 25 25 C 1.50810 * 128.52439 * 180.14773 * 5 4 3 26 26 H 1.09006 * 109.46907 * 270.04215 * 1 2 3 27 27 H 1.08996 * 109.46963 * 30.03625 * 1 2 3 28 28 H 1.09000 * 109.47515 * 150.04041 * 1 2 3 29 29 H 1.09008 * 109.58993 * 282.66441 * 7 6 2 30 30 H 1.09004 * 109.59468 * 43.11429 * 7 6 2 31 31 H 0.97004 * 119.99720 * 0.02562 * 12 10 8 32 32 H 1.08997 * 109.46983 * 300.00631 * 13 12 10 33 33 H 1.09000 * 109.47106 * 60.00113 * 13 12 10 34 34 H 1.09006 * 109.47126 * 300.00211 * 14 13 12 35 35 H 1.09000 * 109.46986 * 60.00042 * 14 13 12 36 36 H 0.96995 * 119.99793 * 0.02562 * 15 14 13 37 37 H 0.96996 * 120.00001 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.50461 * 170.72441 * 24 8 7 39 39 H 1.09000 * 109.53118 * 50.64120 * 24 8 7 40 40 H 1.08993 * 109.73169 * 283.74313 * 25 5 4 41 41 H 1.08996 * 109.72750 * 44.37712 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5191 0.6811 0.0005 5 6 3.5815 -0.6157 0.0015 6 7 2.3075 -1.0833 0.0005 7 6 1.9366 -2.4981 -0.0067 8 6 3.1553 -3.3255 -0.4275 9 1 3.3631 -3.1495 -1.4829 10 6 2.8690 -4.7890 -0.2096 11 8 1.7986 -5.1368 0.2422 12 7 3.8024 -5.7114 -0.5170 13 6 3.5239 -7.1341 -0.3057 14 6 4.7385 -7.9605 -0.7328 15 7 4.4602 -9.3831 -0.5209 16 6 5.4083 -10.3203 -0.8342 17 1 6.3613 -10.0106 -1.2370 18 6 5.1444 -11.6683 -0.6339 19 7 3.9832 -12.0456 -0.1425 20 14 6.4379 -12.9466 -1.0605 21 1 7.6475 -12.2686 -1.5919 22 1 6.7959 -13.7147 0.1591 23 1 5.8984 -13.8729 -2.0882 24 6 4.3714 -2.9141 0.4073 25 6 4.8051 -1.4972 0.0054 26 1 -0.3633 0.0008 1.0277 27 1 -0.3633 0.8896 -0.5144 28 1 -0.3634 -0.8903 -0.5132 29 1 1.6206 -2.7981 0.9925 30 1 1.1227 -2.6591 -0.7136 31 1 4.6586 -5.4332 -0.8782 32 1 3.3164 -7.3108 0.7496 33 1 2.6584 -7.4270 -0.9001 34 1 4.9455 -7.7835 -1.7883 35 1 5.6042 -7.6676 -0.1387 36 1 3.6042 -9.6612 -0.1595 37 1 3.7986 -12.9876 -0.0030 38 1 5.1902 -3.6101 0.2251 39 1 4.1093 -2.9297 1.4652 40 1 5.2490 -1.5152 -0.9899 41 1 5.5303 -1.1169 0.7248 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152090589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:23 Heat of formation + Delta-G solvation = 43.428399 kcal Electronic energy + Delta-G solvation = -22787.401606 eV Core-core repulsion = 19317.569771 eV Total energy + Delta-G solvation = -3469.831835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.61751 -40.27977 -37.23099 -35.87602 -34.55208 -33.96940 -32.08711 -31.24828 -30.79144 -27.97645 -27.68316 -25.32741 -23.82962 -23.33878 -21.76970 -21.59135 -20.79985 -19.79872 -17.86549 -17.40032 -16.95391 -16.41188 -15.97268 -15.78540 -15.27353 -14.75186 -14.66704 -14.50415 -14.26974 -13.93458 -13.68483 -13.46763 -13.29257 -13.01588 -12.96849 -12.63301 -12.56894 -11.89148 -11.73438 -11.56194 -11.51307 -11.22483 -10.92338 -10.89774 -10.59799 -10.42720 -10.18910 -10.07542 -9.82955 -9.25476 -9.17927 -8.98294 -7.08961 -5.88029 -3.19328 1.50711 2.04591 2.33425 2.58317 2.94618 3.36444 3.41883 3.44391 3.65730 3.86758 4.02810 4.07462 4.16553 4.49781 4.52446 4.59096 4.67846 4.75752 4.85961 5.04360 5.09998 5.17432 5.27264 5.34136 5.35841 5.40258 5.47767 5.51720 5.63111 5.67227 5.81653 5.89658 5.99028 6.27878 6.53768 6.55897 6.56211 7.30490 7.58442 7.97529 8.29307 8.47089 9.40932 9.94454 10.28763 11.34486 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.042883 B = 0.002396 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.785090 B =11685.348210 C =12228.773996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.301 5.301 4 N -0.291 5.291 5 C 0.172 3.828 6 N -0.469 5.469 7 C 0.123 3.877 8 C -0.123 4.123 9 H 0.112 0.888 10 C 0.522 3.478 11 O -0.537 6.537 12 N -0.716 5.716 13 C 0.110 3.890 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C -0.119 4.119 25 C -0.031 4.031 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 22.228 -0.502 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.142 5.142 4 N -0.130 5.130 5 C -0.096 4.096 6 N -0.160 5.160 7 C 0.000 4.000 8 C -0.145 4.145 9 H 0.130 0.870 10 C 0.306 3.694 11 O -0.414 6.414 12 N -0.366 5.366 13 C -0.014 4.014 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.377 4.377 17 H 0.091 0.909 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.158 4.158 25 C -0.071 4.071 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.211 23.308 -0.228 23.530 hybrid contribution 0.365 -2.141 -0.324 2.196 sum -2.846 21.167 -0.552 21.365 Atomic orbital electron populations 1.20236 0.83623 1.04609 1.04218 1.24689 0.97151 0.82695 1.04234 1.74490 0.96111 1.23674 1.19913 1.74038 1.12335 1.08047 1.18597 1.24720 0.87079 0.92603 1.05181 1.46007 1.07008 1.08492 1.54518 1.21750 0.97610 0.75205 1.05391 1.21601 0.96369 0.93064 1.03489 0.87014 1.19944 0.84412 0.86814 0.78229 1.90755 1.24201 1.81885 1.44580 1.45892 1.18158 1.07400 1.65200 1.21651 0.99805 0.77843 1.02070 1.20753 0.93651 0.86183 0.97772 1.42190 1.18422 0.98887 1.77986 1.19223 0.95627 0.86809 1.36000 0.90942 1.24792 0.97260 0.97157 1.01577 1.69670 1.22139 1.15625 1.50344 0.86078 0.80531 0.81669 0.77617 1.20474 1.21711 1.21724 1.21774 0.96831 0.96513 1.00669 1.20243 0.91209 0.90868 1.04735 0.89458 0.88635 0.90268 0.87790 0.87821 0.76416 0.91005 0.91048 0.95772 0.95740 0.77996 0.93337 0.88635 0.90005 0.88238 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.29 36.01 0.37 -0.05 16 2 C 0.18 1.86 8.07 -155.45 -1.25 0.61 16 3 N -0.30 -4.09 12.23 32.70 0.40 -3.69 16 4 N -0.29 -3.94 12.21 32.76 0.40 -3.54 16 5 C 0.17 1.77 7.75 -155.30 -1.20 0.56 16 6 N -0.47 -4.43 3.11 -110.92 -0.35 -4.78 16 7 C 0.12 0.96 5.48 -4.07 -0.02 0.94 16 8 C -0.12 -0.87 2.52 -91.60 -0.23 -1.11 16 9 H 0.11 0.64 8.12 -51.93 -0.42 0.22 16 10 C 0.52 5.59 7.15 -10.98 -0.08 5.51 16 11 O -0.54 -7.90 15.82 5.56 0.09 -7.81 16 12 N -0.72 -7.63 5.38 -60.30 -0.32 -7.95 16 13 C 0.11 1.64 5.79 -4.05 -0.02 1.62 16 14 C 0.14 2.57 6.37 -4.05 -0.03 2.55 16 15 N -0.73 -17.60 5.60 -59.91 -0.34 -17.94 16 16 C -0.25 -6.61 9.99 -15.06 -0.15 -6.76 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 20 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.12 -0.69 5.23 -26.39 -0.14 -0.82 16 25 C -0.03 -0.19 6.34 -27.56 -0.17 -0.37 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.37 7.76 -51.93 -0.40 -0.04 16 29 H 0.10 0.87 7.78 -51.92 -0.40 0.46 16 30 H 0.10 0.72 7.85 -51.93 -0.41 0.31 16 31 H 0.40 3.10 7.81 -40.82 -0.32 2.78 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.39 9.90 7.67 -40.82 -0.31 9.59 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.10 0.40 7.32 -51.93 -0.38 0.02 16 39 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -35.53 342.48 -8.28 -43.81 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.00 Total: 4.58 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -3.03 Total: 2.26 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: 0.52 Total: -64.67 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.53 -8.28 -43.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152090589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.234 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds